Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 LINC01864-201ENST00000587218 1661 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
COL5A3P25940 APOC1-209ENST00000592885 562 ntTSL 3 BASIC18.09■□□□□ 0.49
COL5A3P25940 CADPS-219ENST00000612439 5455 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
COL5A3P25940 SH3D19-211ENST00000604030 5228 ntTSL 5 BASIC18.09■□□□□ 0.49
COL5A3P25940 DENND5A-201ENST00000328194 5031 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
COL5A3P25940 NCKIPSD-201ENST00000294129 2989 ntAPPRIS P3 TSL 1 (best) BASIC18.09■□□□□ 0.49
COL5A3P25940 BBS1-202ENST00000393994 1790 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
COL5A3P25940 GLIS1-201ENST00000312233 2812 ntAPPRIS P2 TSL 2 BASIC18.09■□□□□ 0.49
COL5A3P25940 GLIS1-202ENST00000628545 2807 ntAPPRIS ALT2 TSL 5 BASIC18.09■□□□□ 0.49
COL5A3P25940 TNNI2-201ENST00000252898 678 ntAPPRIS P3 TSL 3 BASIC18.09■□□□□ 0.49
COL5A3P25940 TNNT1-202ENST00000356783 934 ntAPPRIS ALT2 TSL 1 (best) BASIC18.09■□□□□ 0.49
COL5A3P25940 TNNI2-202ENST00000381905 706 ntAPPRIS ALT1 TSL 3 BASIC18.09■□□□□ 0.49
COL5A3P25940 TNNI2-203ENST00000381906 745 ntAPPRIS P3 TSL 3 BASIC18.09■□□□□ 0.49
COL5A3P25940 TNNI2-204ENST00000381911 743 ntAPPRIS P3 TSL 2 BASIC18.09■□□□□ 0.49
COL5A3P25940 AC009779.3-204ENST00000549424 367 ntTSL 3 BASIC18.09■□□□□ 0.49
COL5A3P25940 SOCS2-AS1-204ENST00000551626 618 ntTSL 4 BASIC18.09■□□□□ 0.49
COL5A3P25940 AC006548.2-201ENST00000605217 529 ntBASIC18.09■□□□□ 0.49
COL5A3P25940 AL078590.3-205ENST00000606039 465 ntTSL 5 BASIC18.09■□□□□ 0.49
COL5A3P25940 EFNB3-201ENST00000226091 3222 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
COL5A3P25940 Z99756.1-201ENST00000458463 1951 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
COL5A3P25940 ATF7-205ENST00000548446 1892 ntAPPRIS ALT1 TSL 2 BASIC18.08■□□□□ 0.49
COL5A3P25940 CRAT-201ENST00000318080 2763 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
COL5A3P25940 NCF4-202ENST00000397147 1641 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
COL5A3P25940 ALDOA-204ENST00000412304 1603 ntAPPRIS P2 TSL 1 (best) BASIC18.08■□□□□ 0.49
COL5A3P25940 AC055854.1-203ENST00000521141 1630 ntTSL 5 BASIC18.08■□□□□ 0.49
COL5A3P25940 AC006262.1-203ENST00000598170 1634 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
COL5A3P25940 COQ8B-202ENST00000324464 2443 ntAPPRIS P3 TSL 1 (best) BASIC18.08■□□□□ 0.49
COL5A3P25940 RRAGA-201ENST00000380527 1589 ntAPPRIS P1 BASIC18.08■□□□□ 0.49
COL5A3P25940 INTS11-248ENST00000545578 2263 ntTSL 2 BASIC18.08■□□□□ 0.49
COL5A3P25940 HNRNPLL-212ENST00000608859 3035 ntTSL 5 BASIC18.08■□□□□ 0.49
COL5A3P25940 FAM83G-201ENST00000345041 2929 ntAPPRIS P1 TSL 5 BASIC18.08■□□□□ 0.49
COL5A3P25940 ZNF79-202ENST00000543471 2194 ntTSL 2 BASIC18.08■□□□□ 0.49
COL5A3P25940 ZNF79-203ENST00000612342 2192 ntTSL 2 BASIC18.08■□□□□ 0.49
COL5A3P25940 AC093525.2-201ENST00000564543 1944 ntAPPRIS P1 TSL 2 BASIC18.08■□□□□ 0.48
COL5A3P25940 PGLYRP3-201ENST00000290722 1173 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
COL5A3P25940 AC012506.1-201ENST00000423706 525 ntTSL 4 BASIC18.08■□□□□ 0.48
COL5A3P25940 KCNK16-204ENST00000437525 981 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
COL5A3P25940 APCDD1L-AS1-206ENST00000445984 566 ntTSL 3 BASIC18.08■□□□□ 0.48
COL5A3P25940 APCDD1L-AS1-208ENST00000448374 546 ntTSL 4 BASIC18.08■□□□□ 0.48
COL5A3P25940 AC106869.1-201ENST00000448713 577 ntTSL 4 BASIC18.08■□□□□ 0.48
COL5A3P25940 LINC00887-204ENST00000456816 796 ntTSL 3 BASIC18.08■□□□□ 0.48
COL5A3P25940 AL353150.1-201ENST00000456944 583 ntTSL 2 BASIC18.08■□□□□ 0.48
COL5A3P25940 EIF2B1-205ENST00000539951 848 ntTSL 5 BASIC18.08■□□□□ 0.48
COL5A3P25940 STAT5A-208ENST00000587646 1022 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
COL5A3P25940 DHPS-207ENST00000594424 1172 ntTSL 3 BASIC18.08■□□□□ 0.48
COL5A3P25940 KXD1-211ENST00000599319 707 ntAPPRIS P1 TSL 3 BASIC18.08■□□□□ 0.48
COL5A3P25940 AP001527.2-201ENST00000614441 631 ntBASIC18.08■□□□□ 0.48
COL5A3P25940 HOGA1-202ENST00000370646 2488 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
COL5A3P25940 PCK2-208ENST00000559250 1804 ntTSL 5 BASIC18.08■□□□□ 0.48
COL5A3P25940 LGALS8-203ENST00000341872 2437 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.48
COL5A3P25940 AL928654.2-201ENST00000551271 2279 ntTSL 3 BASIC18.08■□□□□ 0.48
COL5A3P25940 SYT3-202ENST00000593901 2836 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
COL5A3P25940 SYNC-202ENST00000409190 3398 ntAPPRIS P3 TSL 2 BASIC18.08■□□□□ 0.48
COL5A3P25940 ZSCAN2-214ENST00000546148 2242 ntAPPRIS P2 TSL 2 BASIC18.08■□□□□ 0.48
COL5A3P25940 NOTO-201ENST00000398468 2749 ntAPPRIS P1 TSL 2 BASIC18.08■□□□□ 0.48
COL5A3P25940 PGRMC2-207ENST00000520121 3785 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
COL5A3P25940 SFT2D3-201ENST00000310981 3735 ntAPPRIS P1 BASIC18.08■□□□□ 0.48
COL5A3P25940 HYOU1-218ENST00000614668 1569 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
COL5A3P25940 DNAI1-209ENST00000614641 2598 ntAPPRIS ALT2 TSL 5 BASIC18.08■□□□□ 0.48
COL5A3P25940 OXSM-201ENST00000280701 1519 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
COL5A3P25940 ADPRH-205ENST00000478927 1501 ntAPPRIS P1 TSL 2 BASIC18.08■□□□□ 0.48
COL5A3P25940 PLAT-205ENST00000519510 2030 ntTSL 5 BASIC18.08■□□□□ 0.48
COL5A3P25940 C4orf19-201ENST00000284437 1949 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
COL5A3P25940 REC8-209ENST00000611366 2331 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
COL5A3P25940 IVNS1ABP-202ENST00000367498 4199 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
COL5A3P25940 TRIM23-202ENST00000274327 1829 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
COL5A3P25940 PRSS23-201ENST00000280258 4015 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
COL5A3P25940 ASAH1-201ENST00000262097 2618 ntAPPRIS P2 TSL 1 (best) BASIC18.07■□□□□ 0.48
COL5A3P25940 FLAD1-201ENST00000292180 2160 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
COL5A3P25940 HIST1H1D-201ENST00000244534 666 ntAPPRIS P1 BASIC18.07■□□□□ 0.48
COL5A3P25940 IFNLR1-204ENST00000374419 953 ntTSL 5 BASIC18.07■□□□□ 0.48
COL5A3P25940 CACNG7-202ENST00000391766 631 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
COL5A3P25940 AC092573.1-201ENST00000433054 884 ntBASIC18.07■□□□□ 0.48
COL5A3P25940 NME6-208ENST00000435684 599 ntTSL 2 BASIC18.07■□□□□ 0.48
COL5A3P25940 AC005845.1-201ENST00000539206 653 ntTSL 3 BASIC18.07■□□□□ 0.48
COL5A3P25940 C12orf57-204ENST00000540506 551 ntTSL 2 BASIC18.07■□□□□ 0.48
COL5A3P25940 ALG10B-203ENST00000551464 571 ntTSL 3 BASIC18.07■□□□□ 0.48
COL5A3P25940 AC130456.3-201ENST00000561762 633 ntTSL 3 BASIC18.07■□□□□ 0.48
COL5A3P25940 TMEM202-AS1-201ENST00000562573 723 ntTSL 3 BASIC18.07■□□□□ 0.48
COL5A3P25940 AC018761.2-201ENST00000585496 296 ntTSL 3 BASIC18.07■□□□□ 0.48
COL5A3P25940 KCNJ12-202ENST00000583088 5425 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
COL5A3P25940 TBC1D3G-201ENST00000569055 2065 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
COL5A3P25940 TBC1D3H-201ENST00000610350 2065 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
COL5A3P25940 TBC1D3L-202ENST00000617678 2065 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
COL5A3P25940 FAM86C1-201ENST00000346333 2010 ntAPPRIS P3 TSL 1 (best) BASIC18.07■□□□□ 0.48
COL5A3P25940 SLC36A1-207ENST00000520701 2005 ntAPPRIS P1 TSL 5 BASIC18.07■□□□□ 0.48
COL5A3P25940 ATP5A1-201ENST00000282050 1945 ntAPPRIS P1 TSL 5 BASIC18.07■□□□□ 0.48
COL5A3P25940 UBE2A-202ENST00000371558 1874 ntAPPRIS P2 TSL 1 (best) BASIC18.07■□□□□ 0.48
COL5A3P25940 PRSS12-201ENST00000296498 4809 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
COL5A3P25940 PNMA1-201ENST00000316836 2590 ntAPPRIS P1 BASIC18.07■□□□□ 0.48
COL5A3P25940 MRPL55-205ENST00000366731 1423 ntTSL 2 BASIC18.07■□□□□ 0.48
COL5A3P25940 CYP4X1-201ENST00000371901 2357 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
COL5A3P25940 SLC41A3-204ENST00000383598 2330 ntAPPRIS P3 TSL 2 BASIC18.07■□□□□ 0.48
COL5A3P25940 AC060234.2-201ENST00000428825 1610 ntTSL 5 BASIC18.06■□□□□ 0.48
COL5A3P25940 SLC26A11-202ENST00000411502 2872 ntAPPRIS P1 TSL 2 BASIC18.06■□□□□ 0.48
COL5A3P25940 AC253536.3-201ENST00000444093 558 ntTSL 3 BASIC18.06■□□□□ 0.48
COL5A3P25940 NMNAT3-213ENST00000512391 794 ntTSL 3 BASIC18.06■□□□□ 0.48
COL5A3P25940 AC022447.6-201ENST00000515522 438 ntBASIC18.06■□□□□ 0.48
COL5A3P25940 SERGEF-208ENST00000528200 1264 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
COL5A3P25940 ACSM5-206ENST00000575584 1130 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 36.7 ms