Protein–RNA interactions for Protein: P22415

USF1, Upstream stimulatory factor 1, humanhuman

Predicted RBP Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF1P22415 GTF2IRD1-205ENST00000476977 5868 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
USF1P22415 PPP2R5D-208ENST00000485511 3044 ntAPPRIS P3 TSL 1 (best) BASIC12.69□□□□□ -0.38
USF1P22415 PGR-210ENST00000619228 3038 ntTSL 5 BASIC12.69□□□□□ -0.38
USF1P22415 AL139082.1-201ENST00000613982 3433 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
USF1P22415 CAPN7-201ENST00000253693 4353 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
USF1P22415 ANKRD11-203ENST00000378330 9132 ntAPPRIS P2 TSL 1 (best) BASIC12.69□□□□□ -0.38
USF1P22415 ISLR-201ENST00000249842 2371 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
USF1P22415 EYA4-205ENST00000430974 2364 ntTSL 2 BASIC12.69□□□□□ -0.38
USF1P22415 YIPF6-204ENST00000462683 6741 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
USF1P22415 GOLGA8DP-202ENST00000341390 2184 ntBASIC12.69□□□□□ -0.38
USF1P22415 AC084364.1-201ENST00000551967 1556 ntBASIC12.69□□□□□ -0.38
USF1P22415 SNAP91-213ENST00000521485 4521 ntAPPRIS ALT2 TSL 5 BASIC12.69□□□□□ -0.38
USF1P22415 ALDOA-225ENST00000569545 1359 ntAPPRIS P2 TSL 5 BASIC12.69□□□□□ -0.38
USF1P22415 MLKL-202ENST00000308807 2523 ntAPPRIS P1 TSL 2 BASIC12.68□□□□□ -0.38
USF1P22415 FOXH1-201ENST00000377317 2503 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
USF1P22415 CAST-224ENST00000508830 2539 ntAPPRIS ALT2 TSL 5 BASIC12.68□□□□□ -0.38
USF1P22415 MAP2K3-202ENST00000342679 2303 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
USF1P22415 TBK1-201ENST00000331710 3256 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
USF1P22415 ICAM3-201ENST00000160262 1934 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
USF1P22415 LRRN1-201ENST00000319331 3823 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
USF1P22415 NOX5-204ENST00000455873 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC12.68□□□□□ -0.38
USF1P22415 FAM219A-206ENST00000379087 3573 ntAPPRIS ALT1 TSL 4 BASIC12.68□□□□□ -0.38
USF1P22415 BCAR1-204ENST00000418647 3387 ntAPPRIS ALT2 TSL 2 BASIC12.68□□□□□ -0.38
USF1P22415 CREB3L3-201ENST00000078445 2618 ntAPPRIS P3 TSL 1 (best) BASIC12.68□□□□□ -0.38
USF1P22415 ANP32A-203ENST00000465139 2440 ntAPPRIS P2 TSL 1 (best) BASIC12.68□□□□□ -0.38
USF1P22415 PRRG1-203ENST00000463135 1663 ntTSL 2 BASIC12.68□□□□□ -0.38
USF1P22415 ETV5-206ENST00000434744 2213 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
USF1P22415 PRKAG3-206ENST00000529249 2222 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
USF1P22415 SLC4A3-202ENST00000317151 4069 ntAPPRIS P1 TSL 5 BASIC12.68□□□□□ -0.38
USF1P22415 EXOG-201ENST00000287675 2792 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
USF1P22415 SHMT2-202ENST00000414700 2006 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
USF1P22415 PDZD4-201ENST00000164640 3689 ntAPPRIS P3 TSL 1 (best) BASIC12.68□□□□□ -0.38
USF1P22415 PRSS54-201ENST00000219301 1810 ntAPPRIS P1 TSL 5 BASIC12.68□□□□□ -0.38
USF1P22415 C11orf80-201ENST00000360962 1807 ntAPPRIS ALT2 TSL 5 BASIC12.68□□□□□ -0.38
USF1P22415 CEP70-213ENST00000489254 1811 ntAPPRIS ALT2 TSL 2 BASIC12.68□□□□□ -0.38
USF1P22415 ZBTB7C-213ENST00000588982 4949 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
USF1P22415 TISP43-201ENST00000409793 538 ntTSL 4 BASIC12.68□□□□□ -0.38
USF1P22415 LSM5-207ENST00000410044 687 ntTSL 3 BASIC12.68□□□□□ -0.38
USF1P22415 HNRNPA1P63-201ENST00000427917 963 ntBASIC12.68□□□□□ -0.38
USF1P22415 AL157392.3-216ENST00000437446 462 ntTSL 3 BASIC12.68□□□□□ -0.38
USF1P22415 IQCF3-203ENST00000444293 450 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
USF1P22415 MRPS25-203ENST00000444840 1281 ntTSL 2 BASIC12.68□□□□□ -0.38
USF1P22415 GDNF-AS1-201ENST00000503382 604 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
USF1P22415 MAX-211ENST00000555667 574 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
USF1P22415 RPL28-208ENST00000559463 852 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
USF1P22415 COG4-212ENST00000564653 590 ntTSL 5 BASIC12.68□□□□□ -0.38
USF1P22415 RN7SL713P-201ENST00000582127 302 ntBASIC12.68□□□□□ -0.38
USF1P22415 NDUFV2P1-201ENST00000596415 907 ntBASIC12.68□□□□□ -0.38
USF1P22415 OR10B1P-201ENST00000601666 907 ntBASIC12.68□□□□□ -0.38
USF1P22415 ZACNP1-201ENST00000612259 710 ntBASIC12.68□□□□□ -0.38
USF1P22415 TUBB3-215ENST00000625617 570 ntTSL 4 BASIC12.68□□□□□ -0.38
USF1P22415 EDDM13-208ENST00000637802 854 ntAPPRIS P1 TSL 5 BASIC12.68□□□□□ -0.38
USF1P22415 FUT3-209ENST00000589918 2182 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
USF1P22415 KIF17-201ENST00000247986 3969 ntAPPRIS P3 TSL 1 (best) BASIC12.68□□□□□ -0.38
USF1P22415 HLA-DQB1-205ENST00000434651 1642 ntAPPRIS P1 BASIC12.68□□□□□ -0.38
USF1P22415 C18orf15-201ENST00000623680 2534 ntBASIC12.68□□□□□ -0.38
USF1P22415 LFNG-202ENST00000338732 1968 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
USF1P22415 MGRN1-202ENST00000399577 6425 ntAPPRIS ALT2 TSL 1 (best) BASIC12.68□□□□□ -0.38
USF1P22415 DDX55-201ENST00000238146 2654 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
USF1P22415 RUFY2-204ENST00000399200 2685 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
USF1P22415 MRPS7-201ENST00000245539 1406 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
USF1P22415 TRIM56-201ENST00000306085 10952 ntAPPRIS P2 TSL 1 (best) BASIC12.68□□□□□ -0.38
USF1P22415 TBC1D24-205ENST00000567020 6673 ntAPPRIS P3 TSL 1 (best) BASIC12.68□□□□□ -0.38
USF1P22415 GPM6A-210ENST00000506894 2614 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
USF1P22415 MPPED2-202ENST00000448418 5591 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
USF1P22415 WASHC2A-202ENST00000314664 4519 ntAPPRIS ALT2 TSL 1 (best) BASIC12.68□□□□□ -0.38
USF1P22415 TRPM2-AS-202ENST00000456880 2056 ntTSL 2 BASIC12.68□□□□□ -0.38
USF1P22415 HDAC8-209ENST00000373589 1740 ntTSL 2 BASIC12.68□□□□□ -0.38
USF1P22415 TRMT2B-201ENST00000372935 2921 ntAPPRIS P3 TSL 1 (best) BASIC12.68□□□□□ -0.38
USF1P22415 PAK1-210ENST00000528203 1878 ntTSL 2 BASIC12.68□□□□□ -0.38
USF1P22415 SUPT20H-201ENST00000350612 2739 ntAPPRIS ALT2 TSL 1 (best) BASIC12.68□□□□□ -0.38
USF1P22415 AC126365.1-201ENST00000578585 1514 ntBASIC12.67□□□□□ -0.38
USF1P22415 DESI2-202ENST00000302550 4208 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
USF1P22415 DIAPH2-204ENST00000373054 3376 ntAPPRIS ALT2 TSL 5 BASIC12.67□□□□□ -0.38
USF1P22415 GGT6-201ENST00000301395 2534 ntTSL 2 BASIC12.67□□□□□ -0.38
USF1P22415 RRP1-207ENST00000497547 3022 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
USF1P22415 TMEM181-201ENST00000367090 5390 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
USF1P22415 FLAD1-201ENST00000292180 2160 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
USF1P22415 CNKSR1-214ENST00000531191 2673 ntTSL 5 BASIC12.67□□□□□ -0.38
USF1P22415 SLC35F2-204ENST00000525815 3170 ntAPPRIS P2 TSL 1 (best) BASIC12.67□□□□□ -0.38
USF1P22415 MYOM3-202ENST00000374434 5804 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
USF1P22415 HOXC12-201ENST00000243103 3335 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
USF1P22415 NKIRAS1-201ENST00000388759 2335 ntAPPRIS P2 TSL 3 BASIC12.67□□□□□ -0.38
USF1P22415 ACSM2B-207ENST00000565232 2322 ntAPPRIS P1 TSL 2 BASIC12.67□□□□□ -0.38
USF1P22415 SNRNP27-202ENST00000409116 1339 ntTSL 5 BASIC12.67□□□□□ -0.38
USF1P22415 TVP23C-210ENST00000584811 2989 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
USF1P22415 SUGP2-214ENST00000600377 4752 ntAPPRIS ALT2 TSL 2 BASIC12.67□□□□□ -0.38
USF1P22415 AC112693.3-201ENST00000624819 1983 ntBASIC12.67□□□□□ -0.38
USF1P22415 PLAGL1-208ENST00000437412 2640 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
USF1P22415 PLPP3-201ENST00000371250 3292 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
USF1P22415 REPIN1-201ENST00000397281 3292 ntAPPRIS P3 TSL 2 BASIC12.67□□□□□ -0.38
USF1P22415 KIRREL1-204ENST00000368173 7519 ntTSL 2 BASIC12.67□□□□□ -0.38
USF1P22415 UCP2-201ENST00000310473 2113 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
USF1P22415 HCRTR1-202ENST00000373706 1642 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
USF1P22415 MTMR6-201ENST00000381801 5659 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
USF1P22415 CCNA1-204ENST00000630422 1751 ntAPPRIS P1 TSL 2 BASIC12.67□□□□□ -0.38
USF1P22415 TRAF6-201ENST00000348124 2558 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
USF1P22415 AC023024.1-201ENST00000558838 2590 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
USF1P22415 TPBG-202ENST00000535040 3392 ntAPPRIS P1 TSL 2 BASIC12.67□□□□□ -0.38
USF1P22415 SLC35C1-201ENST00000314134 4171 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Retrieved 100 of 98,524 protein–RNA pairs in 42.6 ms