Protein–RNA interactions for Protein: O75150

RNF40, E3 ubiquitin-protein ligase BRE1B, humanhuman

Predictions only

Length 1,001 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF40O75150 ZNF655-212ENST00000424881 4666 ntAPPRIS ALT2 TSL 2 BASIC16.21■□□□□ 0.19
RNF40O75150 TLL1-201ENST00000061240 6708 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
RNF40O75150 GALNT3-201ENST00000392701 3868 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
RNF40O75150 PDHX-201ENST00000227868 2389 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
RNF40O75150 FOXP3-203ENST00000376207 2382 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
RNF40O75150 HIST3H2BB-201ENST00000620438 2364 ntAPPRIS P1 BASIC16.21■□□□□ 0.19
RNF40O75150 TSC2-203ENST00000382538 5264 ntAPPRIS ALT2 TSL 2 BASIC16.21■□□□□ 0.18
RNF40O75150 ATE1-202ENST00000369040 4803 ntTSL 2 BASIC16.21■□□□□ 0.18
RNF40O75150 CASP2-207ENST00000619992 4006 ntTSL 1 (best) BASIC16.21■□□□□ 0.18
RNF40O75150 ITGAV-201ENST00000261023 7030 ntAPPRIS P3 TSL 1 (best) BASIC16.21■□□□□ 0.18
RNF40O75150 MRVI1-204ENST00000527509 2686 ntTSL 1 (best) BASIC16.21■□□□□ 0.18
RNF40O75150 AL031280.1-201ENST00000436991 2224 ntTSL 2 BASIC16.21■□□□□ 0.18
RNF40O75150 TMPRSS2-202ENST00000398585 3240 ntTSL 2 BASIC16.21■□□□□ 0.18
RNF40O75150 SMTN-223ENST00000619644 3227 ntTSL 2 BASIC16.21■□□□□ 0.18
RNF40O75150 AGTPBP1-208ENST00000628899 4222 ntTSL 2 BASIC16.21■□□□□ 0.18
RNF40O75150 MAPK4-201ENST00000400384 4770 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
RNF40O75150 TBP-207ENST00000616883 1750 ntAPPRIS ALT2 TSL 5 BASIC16.21■□□□□ 0.18
RNF40O75150 PMM2-201ENST00000268261 2313 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
RNF40O75150 PHLDA1-201ENST00000266671 8069 ntAPPRIS P2 TSL 1 (best) BASIC16.2■□□□□ 0.18
RNF40O75150 HERPUD1-201ENST00000300302 1862 ntAPPRIS ALT1 TSL 1 (best) BASIC16.2■□□□□ 0.18
RNF40O75150 ESR2-209ENST00000555278 1883 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
RNF40O75150 LINC01107-201ENST00000446979 1975 ntTSL 2 BASIC16.2■□□□□ 0.18
RNF40O75150 KRT8P22-201ENST00000562317 1415 ntBASIC16.2■□□□□ 0.18
RNF40O75150 AHCYL2-202ENST00000446544 5026 ntAPPRIS ALT1 TSL 1 (best) BASIC16.2■□□□□ 0.18
RNF40O75150 FGR-203ENST00000374005 2729 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
RNF40O75150 SLC29A1-204ENST00000371731 2258 ntAPPRIS P1 TSL 5 BASIC16.2■□□□□ 0.18
RNF40O75150 RAD17-207ENST00000361732 3002 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
RNF40O75150 AC018892.3-201ENST00000623986 2499 ntBASIC16.2■□□□□ 0.18
RNF40O75150 AL121757.1-201ENST00000430097 1836 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
RNF40O75150 AC058822.1-201ENST00000507166 2550 ntAPPRIS P1 TSL 2 BASIC16.2■□□□□ 0.18
RNF40O75150 PRKD2-202ENST00000433867 3321 ntAPPRIS P3 TSL 5 BASIC16.2■□□□□ 0.18
RNF40O75150 BIRC2-214ENST00000621637 3331 ntTSL 5 BASIC16.2■□□□□ 0.18
RNF40O75150 PRSS55-201ENST00000328655 1124 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
RNF40O75150 DBNDD2-208ENST00000372723 1118 ntAPPRIS P1 TSL 2 BASIC16.2■□□□□ 0.18
RNF40O75150 AL136988.1-201ENST00000414640 1029 ntTSL 3 BASIC16.2■□□□□ 0.18
RNF40O75150 AL162726.2-201ENST00000438986 1017 ntBASIC16.2■□□□□ 0.18
RNF40O75150 AP000345.1-201ENST00000454863 569 ntTSL 4 BASIC16.2■□□□□ 0.18
RNF40O75150 AC036214.1-201ENST00000502766 2126 ntTSL 2 BASIC16.2■□□□□ 0.18
RNF40O75150 MFF-223ENST00000524634 647 ntTSL 2 BASIC16.2■□□□□ 0.18
RNF40O75150 AC009065.5-201ENST00000565937 596 ntTSL 3 BASIC16.2■□□□□ 0.18
RNF40O75150 CYP1A1-207ENST00000567032 2107 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
RNF40O75150 MIR4525-201ENST00000580000 75 ntBASIC16.2■□□□□ 0.18
RNF40O75150 KLK3-204ENST00000593997 1035 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
RNF40O75150 AC011466.1-201ENST00000595201 566 ntTSL 4 BASIC16.2■□□□□ 0.18
RNF40O75150 AC133539.2-201ENST00000604757 467 ntBASIC16.2■□□□□ 0.18
RNF40O75150 AP000240.1-201ENST00000609910 452 ntBASIC16.2■□□□□ 0.18
RNF40O75150 CU634019.7-201ENST00000624153 1185 ntBASIC16.2■□□□□ 0.18
RNF40O75150 FP236241.2-201ENST00000624906 1185 ntBASIC16.2■□□□□ 0.18
RNF40O75150 PFAS-212ENST00000625942 396 ntTSL 5 BASIC16.2■□□□□ 0.18
RNF40O75150 ABBA01031660.1-201ENST00000635219 756 ntBASIC16.2■□□□□ 0.18
RNF40O75150 SGK2-204ENST00000373100 2225 ntAPPRIS P1 TSL 5 BASIC16.2■□□□□ 0.18
RNF40O75150 SMOC2-201ENST00000354536 3150 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
RNF40O75150 B9D1-209ENST00000477478 1353 ntTSL 3 BASIC16.2■□□□□ 0.18
RNF40O75150 THUMPD3-AS1-202ENST00000468186 3253 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
RNF40O75150 KTN1-AS1-201ENST00000335142 1465 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
RNF40O75150 GALC-206ENST00000544807 2528 ntTSL 2 BASIC16.2■□□□□ 0.18
RNF40O75150 PFKFB4-201ENST00000232375 3586 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
RNF40O75150 RTEL1-203ENST00000360203 4623 ntAPPRIS P1 TSL 5 BASIC16.2■□□□□ 0.18
RNF40O75150 LSS-202ENST00000397728 4936 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
RNF40O75150 ADCY7-203ENST00000537579 2090 ntTSL 5 BASIC16.2■□□□□ 0.18
RNF40O75150 LHFPL4-201ENST00000287585 4880 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
RNF40O75150 HEPACAM-201ENST00000298251 3602 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
RNF40O75150 AADAT-208ENST00000515480 2193 ntAPPRIS P3 TSL 1 (best) BASIC16.2■□□□□ 0.18
RNF40O75150 HNRNPH1-203ENST00000393432 2279 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
RNF40O75150 CAB39-201ENST00000258418 3826 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
RNF40O75150 FUCA2-201ENST00000002165 2356 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
RNF40O75150 UBTF-205ENST00000526094 2459 ntTSL 5 BASIC16.2■□□□□ 0.18
RNF40O75150 DEPTOR-201ENST00000286234 2569 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
RNF40O75150 NR3C1-209ENST00000503201 2594 ntAPPRIS P3 TSL 1 (best) BASIC16.2■□□□□ 0.18
RNF40O75150 NFATC4-207ENST00000553469 2566 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
RNF40O75150 AXL-201ENST00000301178 4737 ntAPPRIS P4 TSL 1 (best) BASIC16.2■□□□□ 0.18
RNF40O75150 CDH20-201ENST00000262717 3882 ntAPPRIS P1 TSL 2 BASIC16.2■□□□□ 0.18
RNF40O75150 POMP-201ENST00000380842 1330 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
RNF40O75150 TJP2-208ENST00000535702 3984 ntAPPRIS ALT2 TSL 2 BASIC16.19■□□□□ 0.18
RNF40O75150 SMIM5-201ENST00000375215 1546 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
RNF40O75150 PCCB-218ENST00000490504 1613 ntTSL 3 BASIC16.19■□□□□ 0.18
RNF40O75150 SELENOV-201ENST00000335426 1704 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
RNF40O75150 PEX11B-201ENST00000369306 1740 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
RNF40O75150 AL359881.3-201ENST00000602640 1721 ntBASIC16.19■□□□□ 0.18
RNF40O75150 SELENOV-205ENST00000622070 1704 ntTSL 5 BASIC16.19■□□□□ 0.18
RNF40O75150 PRNP-203ENST00000430350 2539 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
RNF40O75150 METTL13-202ENST00000362019 3022 ntTSL 2 BASIC16.19■□□□□ 0.18
RNF40O75150 IRF2BP2-201ENST00000366609 4663 ntAPPRIS P3 TSL 1 (best) BASIC16.19■□□□□ 0.18
RNF40O75150 DNER-201ENST00000341772 3260 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
RNF40O75150 SOX21-AS1-201ENST00000438290 3287 ntTSL 2 BASIC16.19■□□□□ 0.18
RNF40O75150 MVB12B-206ENST00000489637 2666 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
RNF40O75150 MAPT-213ENST00000571987 2277 ntAPPRIS P4 TSL 5 BASIC16.19■□□□□ 0.18
RNF40O75150 ZPBP2-202ENST00000377940 2177 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
RNF40O75150 ACE3P-201ENST00000423435 1973 ntBASIC16.19■□□□□ 0.18
RNF40O75150 CEP164-201ENST00000278935 5630 ntAPPRIS P2 TSL 1 (best) BASIC16.19■□□□□ 0.18
RNF40O75150 ACSM1-204ENST00000520010 1894 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
RNF40O75150 RNPS1-223ENST00000568631 1792 ntAPPRIS P1 TSL 5 BASIC16.19■□□□□ 0.18
RNF40O75150 G6PD-203ENST00000393564 1661 ntAPPRIS ALT2 TSL 5 BASIC16.19■□□□□ 0.18
RNF40O75150 ZNF782-205ENST00000481138 4213 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
RNF40O75150 ENOSF1-209ENST00000580982 1397 ntTSL 5 BASIC16.19■□□□□ 0.18
RNF40O75150 ETFB-201ENST00000309244 900 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
RNF40O75150 GBGT1-202ENST00000372038 847 ntTSL 3 BASIC16.19■□□□□ 0.18
RNF40O75150 LINC01121-201ENST00000378479 1095 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
RNF40O75150 RABL2A-203ENST00000393166 1052 ntAPPRIS P3 TSL 1 (best) BASIC16.19■□□□□ 0.18
RNF40O75150 AL442647.2-201ENST00000429864 857 ntBASIC16.19■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 75.3 ms