Protein–RNA interactions for Protein: O60481

ZIC3, Zinc finger protein ZIC 3, humanhuman

Predictions only

Length 467 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZIC3O60481 MAP7-207ENST00000616617 4326 ntAPPRIS ALT2 TSL 5 BASIC13.34□□□□□ -0.27
ZIC3O60481 EDEM2-202ENST00000374492 1919 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
ZIC3O60481 PLAGL1-206ENST00000416623 3237 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
ZIC3O60481 AC006504.5-208ENST00000588784 2401 ntBASIC13.34□□□□□ -0.27
ZIC3O60481 ZIM2-AS1-201ENST00000595954 2129 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
ZIC3O60481 UCN2-201ENST00000273610 1481 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
ZIC3O60481 GNE-202ENST00000396594 5298 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
ZIC3O60481 MAPKAPK3-203ENST00000446044 2988 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
ZIC3O60481 PMM2-201ENST00000268261 2313 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
ZIC3O60481 DDX55-201ENST00000238146 2654 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
ZIC3O60481 C6orf120-201ENST00000332290 2667 ntAPPRIS P1 BASIC13.34□□□□□ -0.27
ZIC3O60481 PLEKHN1-201ENST00000379407 2194 ntAPPRIS ALT2 TSL 1 (best) BASIC13.34□□□□□ -0.27
ZIC3O60481 SIKE1-203ENST00000369528 5506 ntAPPRIS ALT1 TSL 1 (best) BASIC13.34□□□□□ -0.27
ZIC3O60481 CRYBG2-210ENST00000527815 2523 ntAPPRIS ALT2 TSL 2 BASIC13.34□□□□□ -0.27
ZIC3O60481 SIK1-201ENST00000270162 4712 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
ZIC3O60481 CU639417.2-201ENST00000613488 4705 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
ZIC3O60481 INPP5K-201ENST00000320345 2880 ntTSL 5 BASIC13.34□□□□□ -0.27
ZIC3O60481 SYNRG-223ENST00000616179 4050 ntAPPRIS ALT2 TSL 5 BASIC13.34□□□□□ -0.27
ZIC3O60481 INPP5D-201ENST00000359570 5274 ntAPPRIS ALT2 TSL 1 (best) BASIC13.33□□□□□ -0.27
ZIC3O60481 MEGF10-202ENST00000418761 2238 ntTSL 1 (best) BASIC13.33□□□□□ -0.27
ZIC3O60481 BRD2-202ENST00000374831 4807 ntAPPRIS P3 TSL 1 (best) BASIC13.33□□□□□ -0.27
ZIC3O60481 PCOLCE-201ENST00000223061 1702 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.27
ZIC3O60481 RCHY1-202ENST00000380840 1735 ntTSL 1 (best) BASIC13.33□□□□□ -0.27
ZIC3O60481 CSAD-202ENST00000379843 2086 ntTSL 5 BASIC13.33□□□□□ -0.27
ZIC3O60481 WDR25-204ENST00000554175 2055 ntTSL 1 (best) BASIC13.33□□□□□ -0.27
ZIC3O60481 CASR-202ENST00000498619 5009 ntTSL 1 (best) BASIC13.33□□□□□ -0.27
ZIC3O60481 ZNF687-201ENST00000324048 5378 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.27
ZIC3O60481 EIF4G1-206ENST00000392537 5229 ntTSL 2 BASIC13.33□□□□□ -0.28
ZIC3O60481 ABHD16A-202ENST00000440843 1906 ntTSL 2 BASIC13.33□□□□□ -0.28
ZIC3O60481 GNS-201ENST00000258145 5122 ntAPPRIS P2 TSL 1 (best) BASIC13.33□□□□□ -0.28
ZIC3O60481 SLC25A38-201ENST00000273158 2123 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
ZIC3O60481 STAG3L2-201ENST00000426587 2130 ntTSL 2 BASIC13.33□□□□□ -0.28
ZIC3O60481 SERPING1-204ENST00000378324 1751 ntAPPRIS ALT2 TSL 2 BASIC13.33□□□□□ -0.28
ZIC3O60481 CD68-202ENST00000380498 1771 ntAPPRIS ALT2 TSL 1 (best) BASIC13.33□□□□□ -0.28
ZIC3O60481 AP001627.1-201ENST00000437426 1754 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
ZIC3O60481 RCSD1-206ENST00000537350 3044 ntAPPRIS ALT2 TSL 1 (best) BASIC13.33□□□□□ -0.28
ZIC3O60481 WDTC1-202ENST00000361771 4275 ntAPPRIS P3 TSL 1 (best) BASIC13.33□□□□□ -0.28
ZIC3O60481 TNR-201ENST00000263525 5190 ntAPPRIS P1 TSL 5 BASIC13.33□□□□□ -0.28
ZIC3O60481 DDX56-201ENST00000258772 2336 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
ZIC3O60481 LDLR-202ENST00000455727 2333 ntTSL 2 BASIC13.33□□□□□ -0.28
ZIC3O60481 IL1RAP-209ENST00000422940 1957 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
ZIC3O60481 ZNF587-203ENST00000423137 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC13.33□□□□□ -0.28
ZIC3O60481 POM121-203ENST00000434423 3750 ntAPPRIS ALT2 TSL 5 BASIC13.33□□□□□ -0.28
ZIC3O60481 GRID2IP-202ENST00000452113 3428 ntTSL 5 BASIC13.33□□□□□ -0.28
ZIC3O60481 ASIC4-202ENST00000358078 2741 ntAPPRIS ALT2 TSL 5 BASIC13.33□□□□□ -0.28
ZIC3O60481 NBPF9-207ENST00000615421 5835 ntAPPRIS P2 TSL 5 BASIC13.33□□□□□ -0.28
ZIC3O60481 ZNF138-201ENST00000307355 1141 ntAPPRIS ALT2 TSL 4 BASIC13.33□□□□□ -0.28
ZIC3O60481 MBD3L5-201ENST00000329753 778 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
ZIC3O60481 LMO4-201ENST00000370542 1260 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
ZIC3O60481 FAM58BP-201ENST00000439056 645 ntBASIC13.33□□□□□ -0.28
ZIC3O60481 MRPS25-203ENST00000444840 1281 ntTSL 2 BASIC13.33□□□□□ -0.28
ZIC3O60481 AC004898.1-201ENST00000451057 766 ntBASIC13.33□□□□□ -0.28
ZIC3O60481 RNMTL1P1-201ENST00000454103 560 ntBASIC13.33□□□□□ -0.28
ZIC3O60481 TUBB8P8-201ENST00000458717 1058 ntBASIC13.33□□□□□ -0.28
ZIC3O60481 AC010973.2-201ENST00000485974 1230 ntTSL 2 BASIC13.33□□□□□ -0.28
ZIC3O60481 ROPN1B-210ENST00000514116 1088 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
ZIC3O60481 GTF2H2-204ENST00000517900 659 ntTSL 5 BASIC13.33□□□□□ -0.28
ZIC3O60481 FBXL8-208ENST00000521920 574 ntTSL 4 BASIC13.33□□□□□ -0.28
ZIC3O60481 C14orf132-204ENST00000556728 774 ntAPPRIS P1 TSL 2 BASIC13.33□□□□□ -0.28
ZIC3O60481 TUBB8-202ENST00000562809 820 ntTSL 5 BASIC13.33□□□□□ -0.28
ZIC3O60481 C15orf40-211ENST00000565712 559 ntTSL 3 BASIC13.33□□□□□ -0.28
ZIC3O60481 DBNDD1-206ENST00000568838 993 ntTSL 2 BASIC13.33□□□□□ -0.28
ZIC3O60481 MIR4525-201ENST00000580000 75 ntBASIC13.33□□□□□ -0.28
ZIC3O60481 RANGRF-205ENST00000580434 749 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
ZIC3O60481 PRCD-210ENST00000592014 462 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
ZIC3O60481 NCR1-206ENST00000598576 996 ntAPPRIS ALT2 TSL 5 BASIC13.33□□□□□ -0.28
ZIC3O60481 BNIP3P13-201ENST00000599968 566 ntBASIC13.33□□□□□ -0.28
ZIC3O60481 UBXN1-218ENST00000616865 1002 ntTSL 5 BASIC13.33□□□□□ -0.28
ZIC3O60481 IGHV1OR21-1-201ENST00000622028 353 ntAPPRIS P1 BASIC13.33□□□□□ -0.28
ZIC3O60481 AC009053.1-204ENST00000429810 2355 ntTSL 2 BASIC13.33□□□□□ -0.28
ZIC3O60481 MED16-203ENST00000325464 2922 ntAPPRIS P2 TSL 5 BASIC13.33□□□□□ -0.28
ZIC3O60481 PLAT-205ENST00000519510 2030 ntTSL 5 BASIC13.33□□□□□ -0.28
ZIC3O60481 TRIM29-210ENST00000528870 2217 ntTSL 2 BASIC13.33□□□□□ -0.28
ZIC3O60481 SLC12A5-209ENST00000616201 2955 ntTSL 5 BASIC13.33□□□□□ -0.28
ZIC3O60481 CXorf40B-202ENST00000370404 1316 ntAPPRIS P2 TSL 2 BASIC13.33□□□□□ -0.28
ZIC3O60481 SLC4A2-214ENST00000485713 4925 ntAPPRIS P3 TSL 1 (best) BASIC13.33□□□□□ -0.28
ZIC3O60481 GSDMA-203ENST00000635792 1546 ntAPPRIS P1 TSL 5 BASIC13.33□□□□□ -0.28
ZIC3O60481 CNN3-207ENST00000545882 1902 ntTSL 2 BASIC13.33□□□□□ -0.28
ZIC3O60481 AMT-239ENST00000636865 1914 ntTSL 5 BASIC13.33□□□□□ -0.28
ZIC3O60481 CTTN-202ENST00000346329 3272 ntAPPRIS P3 TSL 1 (best) BASIC13.33□□□□□ -0.28
ZIC3O60481 ABI3-201ENST00000225941 2109 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
ZIC3O60481 PAQR6-204ENST00000356983 2143 ntAPPRIS ALT1 TSL 2 BASIC13.33□□□□□ -0.28
ZIC3O60481 TIMP2-201ENST00000262768 3652 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
ZIC3O60481 NR4A1-204ENST00000394825 2528 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
ZIC3O60481 RPARP-AS1-202ENST00000492465 1556 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
ZIC3O60481 DNAJC7-202ENST00000426588 1774 ntTSL 2 BASIC13.32□□□□□ -0.28
ZIC3O60481 RGS6-217ENST00000555571 1764 ntAPPRIS P3 TSL 1 (best) BASIC13.32□□□□□ -0.28
ZIC3O60481 CIT-219ENST00000612548 1799 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
ZIC3O60481 CHEK2-204ENST00000382580 1971 ntAPPRIS ALT2 TSL 1 (best) BASIC13.32□□□□□ -0.28
ZIC3O60481 ZNF79-202ENST00000543471 2194 ntTSL 2 BASIC13.32□□□□□ -0.28
ZIC3O60481 ZNF79-203ENST00000612342 2192 ntTSL 2 BASIC13.32□□□□□ -0.28
ZIC3O60481 ANKMY1-210ENST00000406958 2396 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
ZIC3O60481 CAP1-205ENST00000372802 2964 ntAPPRIS ALT1 TSL 5 BASIC13.32□□□□□ -0.28
ZIC3O60481 TIMP3-201ENST00000266085 4603 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
ZIC3O60481 FBXO28-201ENST00000366862 5451 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
ZIC3O60481 AC015688.4-201ENST00000580780 1647 ntBASIC13.32□□□□□ -0.28
ZIC3O60481 AC092718.8-201ENST00000640345 2892 ntAPPRIS P1 TSL 5 BASIC13.32□□□□□ -0.28
ZIC3O60481 SLC52A3-205ENST00000632431 2694 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
ZIC3O60481 MLF1-217ENST00000619577 2290 ntTSL 5 BASIC13.32□□□□□ -0.28
ZIC3O60481 TOMM34-201ENST00000372813 2062 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Retrieved 100 of 98,524 protein–RNA pairs in 45.3 ms