Protein–RNA interactions for Protein: Q9UN37

VPS4A, Vacuolar protein sorting-associated protein 4A, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4AQ9UN37 AC018653.3-202ENST00000538062 735 ntTSL 3 BASIC14.55□□□□□ -0.08
VPS4AQ9UN37 ACYP1-206ENST00000555694 565 ntAPPRIS P1 TSL 3 BASIC14.55□□□□□ -0.08
VPS4AQ9UN37 AC010491.1-202ENST00000567048 528 ntTSL 2 BASIC14.55□□□□□ -0.08
VPS4AQ9UN37 AC092337.1-201ENST00000568699 1129 ntBASIC14.55□□□□□ -0.08
VPS4AQ9UN37 PAM16-204ENST00000571941 674 ntTSL 3 BASIC14.55□□□□□ -0.08
VPS4AQ9UN37 ZSCAN30-208ENST00000592278 731 ntTSL 4 BASIC14.55□□□□□ -0.08
VPS4AQ9UN37 AC006453.2-202ENST00000635968 827 ntTSL 5 BASIC14.55□□□□□ -0.08
VPS4AQ9UN37 OSTF1-201ENST00000346234 1319 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
VPS4AQ9UN37 RASGEF1A-204ENST00000395810 3235 ntAPPRIS P3 TSL 1 (best) BASIC14.55□□□□□ -0.08
VPS4AQ9UN37 PPP1R12A-AS1-201ENST00000552885 3234 ntTSL 3 BASIC14.55□□□□□ -0.08
VPS4AQ9UN37 C5orf38-207ENST00000515640 1441 ntAPPRIS ALT2 TSL 3 BASIC14.55□□□□□ -0.08
VPS4AQ9UN37 CD2BP2-203ENST00000569466 1417 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
VPS4AQ9UN37 HSPB7-202ENST00000375718 2415 ntTSL 2 BASIC14.55□□□□□ -0.08
VPS4AQ9UN37 CRYM-201ENST00000219599 1471 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
VPS4AQ9UN37 GAD2-201ENST00000259271 2462 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
VPS4AQ9UN37 DDX50-206ENST00000610822 2510 ntTSL 5 BASIC14.55□□□□□ -0.08
VPS4AQ9UN37 MOG-215ENST00000376888 1529 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
VPS4AQ9UN37 ACP5-202ENST00000412435 1527 ntAPPRIS P1 TSL 2 BASIC14.55□□□□□ -0.08
VPS4AQ9UN37 UBA1-201ENST00000335972 3559 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
VPS4AQ9UN37 SIMC1-205ENST00000443967 3572 ntAPPRIS ALT2 TSL 1 (best) BASIC14.55□□□□□ -0.08
VPS4AQ9UN37 SCYL1-201ENST00000270176 2642 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
VPS4AQ9UN37 ADGRG2-207ENST00000379869 4768 ntAPPRIS ALT2 TSL 1 (best) BASIC14.55□□□□□ -0.08
VPS4AQ9UN37 THEMIS2-203ENST00000373925 1650 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
VPS4AQ9UN37 KIAA1211L-201ENST00000397899 3907 ntAPPRIS P2 TSL 1 (best) BASIC14.55□□□□□ -0.08
VPS4AQ9UN37 AICDA-201ENST00000229335 2819 ntAPPRIS P2 TSL 1 (best) BASIC14.55□□□□□ -0.08
VPS4AQ9UN37 BTN1A1-201ENST00000244513 2895 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
VPS4AQ9UN37 MLST8-201ENST00000301724 1735 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
VPS4AQ9UN37 NUP50-201ENST00000347635 5233 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
VPS4AQ9UN37 SNX30-201ENST00000374232 7622 ntAPPRIS P1 TSL 5 BASIC14.55□□□□□ -0.08
VPS4AQ9UN37 MGMT-201ENST00000306010 1759 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
VPS4AQ9UN37 SFXN3-202ENST00000393459 3098 ntAPPRIS P1 TSL 5 BASIC14.55□□□□□ -0.08
VPS4AQ9UN37 HSDL1-201ENST00000219439 3519 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
VPS4AQ9UN37 LMBRD1-202ENST00000370577 2209 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
VPS4AQ9UN37 ALDOA-228ENST00000627059 2402 ntAPPRIS ALT1 TSL 5 BASIC14.54□□□□□ -0.08
VPS4AQ9UN37 RBM26-203ENST00000438737 4132 ntTSL 5 BASIC14.54□□□□□ -0.08
VPS4AQ9UN37 ATXN10-202ENST00000381061 3135 ntTSL 2 BASIC14.54□□□□□ -0.08
VPS4AQ9UN37 AC112229.3-201ENST00000603767 3202 ntAPPRIS P1 TSL 2 BASIC14.54□□□□□ -0.08
VPS4AQ9UN37 AC013271.1-201ENST00000640669 3202 ntAPPRIS P1 TSL 2 BASIC14.54□□□□□ -0.08
VPS4AQ9UN37 RBM8A-201ENST00000369307 796 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
VPS4AQ9UN37 AC007952.1-202ENST00000399083 1173 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
VPS4AQ9UN37 AC104457.1-201ENST00000401024 814 ntBASIC14.54□□□□□ -0.08
VPS4AQ9UN37 GEMIN4-202ENST00000437269 1182 ntTSL 2 BASIC14.54□□□□□ -0.08
VPS4AQ9UN37 PARP8-206ENST00000503665 572 ntTSL 4 BASIC14.54□□□□□ -0.08
VPS4AQ9UN37 USP32P1-208ENST00000506594 1164 ntBASIC14.54□□□□□ -0.08
VPS4AQ9UN37 AL161781.2-201ENST00000509911 739 ntTSL 2 BASIC14.54□□□□□ -0.08
VPS4AQ9UN37 AC136475.5-202ENST00000524824 587 ntTSL 4 BASIC14.54□□□□□ -0.08
VPS4AQ9UN37 AP006621.2-201ENST00000533938 284 ntTSL 3 BASIC14.54□□□□□ -0.08
VPS4AQ9UN37 AP000943.3-201ENST00000536540 954 ntTSL 3 BASIC14.54□□□□□ -0.08
VPS4AQ9UN37 RNASEK-C17orf49-201ENST00000547302 900 ntAPPRIS P1 TSL 5 BASIC14.54□□□□□ -0.08
VPS4AQ9UN37 CARHSP1-203ENST00000561530 729 ntAPPRIS P1 TSL 3 BASIC14.54□□□□□ -0.08
VPS4AQ9UN37 IGHV3OR16-16-201ENST00000563644 343 ntBASIC14.54□□□□□ -0.08
VPS4AQ9UN37 CMTM3-212ENST00000566121 572 ntTSL 3 BASIC14.54□□□□□ -0.08
VPS4AQ9UN37 AC124287.1-201ENST00000582249 838 ntTSL 3 BASIC14.54□□□□□ -0.08
VPS4AQ9UN37 YIF1B-214ENST00000591784 940 ntTSL 5 BASIC14.54□□□□□ -0.08
VPS4AQ9UN37 AL354740.1-203ENST00000593917 424 ntTSL 3 BASIC14.54□□□□□ -0.08
VPS4AQ9UN37 AC133539.2-201ENST00000604757 467 ntBASIC14.54□□□□□ -0.08
VPS4AQ9UN37 WNT11-204ENST00000621122 789 ntTSL 5 BASIC14.54□□□□□ -0.08
VPS4AQ9UN37 RAB34-222ENST00000625712 994 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
VPS4AQ9UN37 AC106017.2-201ENST00000631194 1173 ntTSL 2 BASIC14.54□□□□□ -0.08
VPS4AQ9UN37 AC093525.8-201ENST00000624099 1342 ntBASIC14.54□□□□□ -0.08
VPS4AQ9UN37 KRT8P22-201ENST00000562317 1415 ntBASIC14.54□□□□□ -0.08
VPS4AQ9UN37 TEX28-203ENST00000617225 1525 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
VPS4AQ9UN37 TP73-209ENST00000603362 1668 ntTSL 5 BASIC14.54□□□□□ -0.08
VPS4AQ9UN37 CNDP2-201ENST00000324262 5130 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
VPS4AQ9UN37 TM4SF19-AS1-203ENST00000452051 1829 ntTSL 2 BASIC14.54□□□□□ -0.08
VPS4AQ9UN37 DUOXA1-216ENST00000613425 1867 ntTSL 5 BASIC14.54□□□□□ -0.08
VPS4AQ9UN37 MAEL-202ENST00000367872 1908 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
VPS4AQ9UN37 SLC38A5-212ENST00000619100 2100 ntTSL 2 BASIC14.54□□□□□ -0.08
VPS4AQ9UN37 SLC38A5-214ENST00000622196 2100 ntTSL 5 BASIC14.54□□□□□ -0.08
VPS4AQ9UN37 FHDC1-202ENST00000511601 6583 ntAPPRIS P1 TSL 5 BASIC14.54□□□□□ -0.08
VPS4AQ9UN37 TSEN2-201ENST00000284995 2381 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
VPS4AQ9UN37 PNPLA3-201ENST00000216180 2805 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
VPS4AQ9UN37 ITPK1-207ENST00000555495 3035 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
VPS4AQ9UN37 THSD4-202ENST00000355327 9200 ntAPPRIS P1 TSL 5 BASIC14.54□□□□□ -0.08
VPS4AQ9UN37 ANKLE1-201ENST00000394458 3218 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
VPS4AQ9UN37 PKIA-202ENST00000396418 4163 ntAPPRIS P1 TSL 2 BASIC14.54□□□□□ -0.08
VPS4AQ9UN37 PALD1-201ENST00000263563 4555 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
VPS4AQ9UN37 ASPG-206ENST00000551177 4851 ntAPPRIS P2 TSL 1 (best) BASIC14.54□□□□□ -0.08
VPS4AQ9UN37 MPPED2-202ENST00000448418 5591 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
VPS4AQ9UN37 KIAA0319-203ENST00000535378 6896 ntAPPRIS ALT2 TSL 2 BASIC14.54□□□□□ -0.08
VPS4AQ9UN37 MAP3K11-208ENST00000530153 2830 ntTSL 2 BASIC14.53□□□□□ -0.08
VPS4AQ9UN37 COMP-201ENST00000222271 2461 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
VPS4AQ9UN37 ASAP1-202ENST00000518721 5507 ntAPPRIS P3 TSL 5 BASIC14.53□□□□□ -0.08
VPS4AQ9UN37 AP4M1-205ENST00000422582 1814 ntTSL 2 BASIC14.53□□□□□ -0.08
VPS4AQ9UN37 TRAK1-203ENST00000396175 5033 ntAPPRIS ALT2 TSL 5 BASIC14.53□□□□□ -0.08
VPS4AQ9UN37 TUBB4B-201ENST00000340384 1637 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
VPS4AQ9UN37 EHF-210ENST00000531794 1481 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
VPS4AQ9UN37 ZNF607-201ENST00000355202 4364 ntAPPRIS P3 TSL 2 BASIC14.53□□□□□ -0.08
VPS4AQ9UN37 WSB2-202ENST00000441406 1353 ntTSL 2 BASIC14.53□□□□□ -0.08
VPS4AQ9UN37 PRPS2-203ENST00000398491 1348 ntAPPRIS ALT1 TSL 1 (best) BASIC14.53□□□□□ -0.08
VPS4AQ9UN37 IGHA1-202ENST00000641837 1310 ntAPPRIS P5 BASIC14.53□□□□□ -0.08
VPS4AQ9UN37 BUD31-201ENST00000222969 1035 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
VPS4AQ9UN37 EMC4-201ENST00000249209 852 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
VPS4AQ9UN37 RAD18-204ENST00000418463 563 ntTSL 4 BASIC14.53□□□□□ -0.08
VPS4AQ9UN37 RAD18-205ENST00000421052 582 ntTSL 3 BASIC14.53□□□□□ -0.08
VPS4AQ9UN37 TMEM176B-202ENST00000429904 1206 ntAPPRIS P1 TSL 2 BASIC14.53□□□□□ -0.08
VPS4AQ9UN37 AL669970.3-201ENST00000435284 428 ntTSL 3 BASIC14.53□□□□□ -0.08
VPS4AQ9UN37 RHOA-206ENST00000454011 889 ntTSL 2 BASIC14.53□□□□□ -0.08
VPS4AQ9UN37 AC093904.1-201ENST00000474561 455 ntTSL 3 BASIC14.53□□□□□ -0.08
VPS4AQ9UN37 LLPH-AS1-201ENST00000510317 623 ntTSL 4 BASIC14.53□□□□□ -0.08
Retrieved 100 of 98,524 protein–RNA pairs in 55.7 ms