Protein–RNA interactions for Protein: Q9P219

CCDC88C, Protein Daple, humanhuman

Predictions only

Length 2,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88CQ9P219 DDX49-201ENST00000247003 1830 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
CCDC88CQ9P219 TPM3-208ENST00000341485 2063 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
CCDC88CQ9P219 C1R-202ENST00000536053 2347 ntTSL 2 BASIC14.23□□□□□ -0.13
CCDC88CQ9P219 RAB37-206ENST00000392615 2655 ntTSL 3 BASIC14.22□□□□□ -0.13
CCDC88CQ9P219 CATSPER4-202ENST00000456354 1912 ntAPPRIS P2 TSL 1 (best) BASIC14.22□□□□□ -0.13
CCDC88CQ9P219 SLC8A3-203ENST00000357887 5259 ntTSL 5 BASIC14.22□□□□□ -0.13
CCDC88CQ9P219 CCNE1-203ENST00000444983 1680 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
CCDC88CQ9P219 PYGM-202ENST00000377432 2611 ntTSL 2 BASIC14.22□□□□□ -0.13
CCDC88CQ9P219 FLT3LG-201ENST00000204637 1046 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
CCDC88CQ9P219 MOGAT3-202ENST00000379423 933 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
CCDC88CQ9P219 NREP-204ENST00000419114 704 ntAPPRIS P1 TSL 2 BASIC14.22□□□□□ -0.13
CCDC88CQ9P219 AL160290.2-201ENST00000448347 831 ntTSL 3 BASIC14.22□□□□□ -0.13
CCDC88CQ9P219 DCTD-213ENST00000510370 794 ntAPPRIS P1 TSL 5 BASIC14.22□□□□□ -0.13
CCDC88CQ9P219 SDHD-202ENST00000525291 790 ntTSL 3 BASIC14.22□□□□□ -0.13
CCDC88CQ9P219 CDK2AP2-205ENST00000531506 634 ntTSL 2 BASIC14.22□□□□□ -0.13
CCDC88CQ9P219 AC084859.1-201ENST00000533002 670 ntTSL 4 BASIC14.22□□□□□ -0.13
CCDC88CQ9P219 AC093525.1-201ENST00000569317 596 ntAPPRIS P1 TSL 3 BASIC14.22□□□□□ -0.13
CCDC88CQ9P219 MIR4683-201ENST00000579659 81 ntBASIC14.22□□□□□ -0.13
CCDC88CQ9P219 ZNF347-208ENST00000601804 496 ntTSL 4 BASIC14.22□□□□□ -0.13
CCDC88CQ9P219 SLC38A5-212ENST00000619100 2100 ntTSL 2 BASIC14.22□□□□□ -0.13
CCDC88CQ9P219 SLC38A5-214ENST00000622196 2100 ntTSL 5 BASIC14.22□□□□□ -0.13
CCDC88CQ9P219 ANXA8L1-208ENST00000622769 1861 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
CCDC88CQ9P219 CLCN1-201ENST00000343257 3172 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
CCDC88CQ9P219 RADIL-201ENST00000399583 3689 ntAPPRIS P1 TSL 5 BASIC14.22□□□□□ -0.13
CCDC88CQ9P219 PLCD3-212ENST00000619929 6107 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
CCDC88CQ9P219 SEC16A-202ENST00000290037 8982 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
CCDC88CQ9P219 ZNF84-215ENST00000543758 3501 ntAPPRIS ALT2 TSL 5 BASIC14.22□□□□□ -0.13
CCDC88CQ9P219 FXYD3-202ENST00000346446 1320 ntTSL 2 BASIC14.22□□□□□ -0.13
CCDC88CQ9P219 NRG2-209ENST00000541337 3723 ntTSL 5 BASIC14.22□□□□□ -0.13
CCDC88CQ9P219 ELP6-201ENST00000296149 1401 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
CCDC88CQ9P219 SMARCA4-201ENST00000344626 5392 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
CCDC88CQ9P219 AC112229.3-201ENST00000603767 3202 ntAPPRIS P1 TSL 2 BASIC14.22□□□□□ -0.13
CCDC88CQ9P219 AC013271.1-201ENST00000640669 3202 ntAPPRIS P1 TSL 2 BASIC14.22□□□□□ -0.13
CCDC88CQ9P219 MSTO1-201ENST00000245564 2431 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
CCDC88CQ9P219 ORAI2-205ENST00000478730 5531 ntAPPRIS P1 TSL 2 BASIC14.22□□□□□ -0.13
CCDC88CQ9P219 MAGEA2-204ENST00000611674 1728 ntAPPRIS P1 TSL 2 BASIC14.22□□□□□ -0.13
CCDC88CQ9P219 FAM27C-201ENST00000377542 616 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
CCDC88CQ9P219 PRKG1-AS1-201ENST00000420193 971 ntTSL 3 BASIC14.22□□□□□ -0.13
CCDC88CQ9P219 CALR4P-201ENST00000431943 946 ntBASIC14.22□□□□□ -0.13
CCDC88CQ9P219 FHIT-208ENST00000492590 1081 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
CCDC88CQ9P219 CD74-212ENST00000524315 584 ntTSL 5 BASIC14.22□□□□□ -0.13
CCDC88CQ9P219 RPL27A-202ENST00000524496 558 ntTSL 3 BASIC14.22□□□□□ -0.13
CCDC88CQ9P219 ACTG1P17-201ENST00000558391 1119 ntBASIC14.22□□□□□ -0.13
CCDC88CQ9P219 ZACNP1-201ENST00000612259 710 ntBASIC14.22□□□□□ -0.13
CCDC88CQ9P219 AL096828.3-201ENST00000615354 462 ntBASIC14.22□□□□□ -0.13
CCDC88CQ9P219 RBM8A-206ENST00000632555 751 ntAPPRIS P1 TSL 3 BASIC14.22□□□□□ -0.13
CCDC88CQ9P219 LINC01002-220ENST00000632790 449 ntTSL 5 BASIC14.22□□□□□ -0.13
CCDC88CQ9P219 XPO1-201ENST00000401558 4915 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
CCDC88CQ9P219 TRMT2B-201ENST00000372935 2921 ntAPPRIS P3 TSL 1 (best) BASIC14.22□□□□□ -0.13
CCDC88CQ9P219 AP004608.1-203ENST00000528482 3679 ntTSL 5 BASIC14.22□□□□□ -0.13
CCDC88CQ9P219 DFNA5-201ENST00000342947 2590 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
CCDC88CQ9P219 FGF1-201ENST00000337706 1469 ntAPPRIS P1 TSL 2 BASIC14.22□□□□□ -0.13
CCDC88CQ9P219 FARS2-202ENST00000324331 1692 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
CCDC88CQ9P219 ERN2-202ENST00000457008 3169 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.13
CCDC88CQ9P219 NAA60-229ENST00000575076 2531 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
CCDC88CQ9P219 ARHGAP4-203ENST00000370028 3372 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.13
CCDC88CQ9P219 DRC3-216ENST00000584166 1953 ntTSL 5 BASIC14.21□□□□□ -0.13
CCDC88CQ9P219 CYB561-201ENST00000360793 3001 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
CCDC88CQ9P219 CNOT6-207ENST00000618123 6250 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
CCDC88CQ9P219 TMEM30A-201ENST00000230461 4594 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
CCDC88CQ9P219 LINC00658-202ENST00000420529 1542 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
CCDC88CQ9P219 TAMM41-205ENST00000444133 1619 ntTSL 2 BASIC14.21□□□□□ -0.13
CCDC88CQ9P219 VCAN-211ENST00000513984 1825 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
CCDC88CQ9P219 YPEL1-201ENST00000339468 4329 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
CCDC88CQ9P219 ZNF500-201ENST00000219478 5880 ntAPPRIS P1 TSL 2 BASIC14.21□□□□□ -0.13
CCDC88CQ9P219 RPA3-201ENST00000223129 2020 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
CCDC88CQ9P219 MED17-201ENST00000251871 5142 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
CCDC88CQ9P219 TMEM209-202ENST00000462753 2322 ntAPPRIS ALT1 TSL 5 BASIC14.21□□□□□ -0.13
CCDC88CQ9P219 CEP78-203ENST00000376598 2404 ntAPPRIS ALT2 TSL 5 BASIC14.21□□□□□ -0.13
CCDC88CQ9P219 E2F6-201ENST00000307236 3317 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
CCDC88CQ9P219 GPAA1P2-201ENST00000417923 928 ntBASIC14.21□□□□□ -0.13
CCDC88CQ9P219 AP006547.1-201ENST00000563435 692 ntBASIC14.21□□□□□ -0.13
CCDC88CQ9P219 IGHV3OR16-16-201ENST00000563644 343 ntBASIC14.21□□□□□ -0.13
CCDC88CQ9P219 AC025810.1-201ENST00000569986 981 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
CCDC88CQ9P219 SLC35G4-201ENST00000588001 1017 ntAPPRIS P1 BASIC14.21□□□□□ -0.13
CCDC88CQ9P219 MRPL34-203ENST00000595444 863 ntAPPRIS ALT2 TSL 3 BASIC14.21□□□□□ -0.13
CCDC88CQ9P219 LINC00854-216ENST00000636331 718 ntAPPRIS P5 TSL 5 BASIC14.21□□□□□ -0.13
CCDC88CQ9P219 OR4C6-202ENST00000641251 1058 ntAPPRIS P1 BASIC14.21□□□□□ -0.13
CCDC88CQ9P219 CYP1A1-203ENST00000395049 1594 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
CCDC88CQ9P219 SUMO3-203ENST00000397898 1779 ntTSL 3 BASIC14.21□□□□□ -0.13
CCDC88CQ9P219 AC055811.4-201ENST00000624039 1754 ntBASIC14.21□□□□□ -0.13
CCDC88CQ9P219 SYP-201ENST00000263233 2498 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
CCDC88CQ9P219 IMPA1-201ENST00000256108 2690 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
CCDC88CQ9P219 SPECC1-202ENST00000395522 2982 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
CCDC88CQ9P219 FRMD5-201ENST00000402883 4091 ntTSL 5 BASIC14.21□□□□□ -0.13
CCDC88CQ9P219 RUNX1-202ENST00000344691 7274 ntAPPRIS ALT1 TSL 1 (best) BASIC14.21□□□□□ -0.13
CCDC88CQ9P219 SUFU-202ENST00000369902 5001 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
CCDC88CQ9P219 XRCC1-201ENST00000262887 2802 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
CCDC88CQ9P219 DMTN-205ENST00000432128 2508 ntTSL 5 BASIC14.21□□□□□ -0.13
CCDC88CQ9P219 AHCYP2-201ENST00000430630 1300 ntBASIC14.21□□□□□ -0.14
CCDC88CQ9P219 NYAP1-201ENST00000300179 3581 ntAPPRIS P1 TSL 2 BASIC14.21□□□□□ -0.14
CCDC88CQ9P219 PSD-209ENST00000611678 3382 ntTSL 1 (best) BASIC14.21□□□□□ -0.14
CCDC88CQ9P219 RBM12-201ENST00000359646 5332 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
CCDC88CQ9P219 PSMD9-207ENST00000541212 2784 ntAPPRIS P2 TSL 1 (best) BASIC14.21□□□□□ -0.14
CCDC88CQ9P219 AIFM1-209ENST00000535724 2468 ntTSL 1 (best) BASIC14.21□□□□□ -0.14
CCDC88CQ9P219 SPRY4-202ENST00000434127 2379 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
CCDC88CQ9P219 DLGAP1-213ENST00000534970 2365 ntTSL 2 BASIC14.21□□□□□ -0.14
CCDC88CQ9P219 MTRF1L-202ENST00000367231 3539 ntTSL 1 (best) BASIC14.21□□□□□ -0.14
CCDC88CQ9P219 TNFRSF11A-206ENST00000617039 3756 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.14
CCDC88CQ9P219 ALDOA-203ENST00000395248 2447 ntTSL 5 BASIC14.21□□□□□ -0.14
Retrieved 100 of 98,524 protein–RNA pairs in 34.9 ms