Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 TEX28P2-201ENST00000617764 1221 ntBASIC14.55□□□□□ -0.08
CCDC28BQ9BUN5 TTC7A-203ENST00000409245 3033 ntTSL 2 BASIC14.55□□□□□ -0.08
CCDC28BQ9BUN5 UBAP1L-201ENST00000502113 1381 ntAPPRIS P1 TSL 5 BASIC14.55□□□□□ -0.08
CCDC28BQ9BUN5 SLCO2B1-203ENST00000428359 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC14.55□□□□□ -0.08
CCDC28BQ9BUN5 IL20RA-207ENST00000541547 3382 ntTSL 2 BASIC14.55□□□□□ -0.08
CCDC28BQ9BUN5 CD34-203ENST00000367036 2538 ntAPPRIS ALT2 TSL 1 (best) BASIC14.55□□□□□ -0.08
CCDC28BQ9BUN5 AC011840.2-201ENST00000563063 1520 ntBASIC14.55□□□□□ -0.08
CCDC28BQ9BUN5 PORCN-204ENST00000361988 1672 ntAPPRIS ALT1 TSL 5 BASIC14.55□□□□□ -0.08
CCDC28BQ9BUN5 MEGF11-203ENST00000409699 6163 ntAPPRIS P1 TSL 5 BASIC14.55□□□□□ -0.08
CCDC28BQ9BUN5 RREB1-202ENST00000349384 7440 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
CCDC28BQ9BUN5 INVS-201ENST00000262456 2968 ntTSL 5 BASIC14.55□□□□□ -0.08
CCDC28BQ9BUN5 ILK-201ENST00000299421 1802 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
CCDC28BQ9BUN5 RNF157-AS1-204ENST00000590137 1812 ntTSL 2 BASIC14.55□□□□□ -0.08
CCDC28BQ9BUN5 CDC25B-205ENST00000439880 3096 ntAPPRIS ALT2 TSL 1 (best) BASIC14.55□□□□□ -0.08
CCDC28BQ9BUN5 SEZ6-203ENST00000360295 4306 ntAPPRIS ALT2 TSL 5 BASIC14.55□□□□□ -0.08
CCDC28BQ9BUN5 TBC1D1-201ENST00000261439 5700 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
CCDC28BQ9BUN5 NDRG4-255ENST00000570248 3207 ntAPPRIS P2 TSL 1 (best) BASIC14.54□□□□□ -0.08
CCDC28BQ9BUN5 SYDE1-201ENST00000342784 3264 ntAPPRIS P1 TSL 2 BASIC14.54□□□□□ -0.08
CCDC28BQ9BUN5 FAM160A2-202ENST00000449352 3354 ntAPPRIS ALT1 TSL 1 (best) BASIC14.54□□□□□ -0.08
CCDC28BQ9BUN5 NAALADL1-202ENST00000355721 2100 ntTSL 5 BASIC14.54□□□□□ -0.08
CCDC28BQ9BUN5 OSBPL3-201ENST00000313367 6760 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
CCDC28BQ9BUN5 IQCE-216ENST00000611775 2289 ntAPPRIS ALT2 TSL 2 BASIC14.54□□□□□ -0.08
CCDC28BQ9BUN5 NRIP3-201ENST00000309166 3809 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
CCDC28BQ9BUN5 AL355390.1-201ENST00000325811 2328 ntTSL 2 BASIC14.54□□□□□ -0.08
CCDC28BQ9BUN5 ANKMY1-210ENST00000406958 2396 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
CCDC28BQ9BUN5 SEMA4F-210ENST00000611975 6007 ntTSL 5 BASIC14.54□□□□□ -0.08
CCDC28BQ9BUN5 ADAM12-201ENST00000368676 3313 ntAPPRIS ALT2 TSL 1 (best) BASIC14.54□□□□□ -0.08
CCDC28BQ9BUN5 GLB1L2-205ENST00000535456 3365 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
CCDC28BQ9BUN5 LSM1-201ENST00000311351 1147 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
CCDC28BQ9BUN5 PRDX5-202ENST00000347941 463 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
CCDC28BQ9BUN5 S100A16-204ENST00000368706 1118 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
CCDC28BQ9BUN5 CYB561D1-202ENST00000369868 1085 ntTSL 2 BASIC14.54□□□□□ -0.08
CCDC28BQ9BUN5 CLTA-203ENST00000396603 1090 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
CCDC28BQ9BUN5 CENPM-205ENST00000404067 905 ntTSL 3 BASIC14.54□□□□□ -0.08
CCDC28BQ9BUN5 CENPM-206ENST00000407253 818 ntTSL 2 BASIC14.54□□□□□ -0.08
CCDC28BQ9BUN5 AC023141.5-201ENST00000458585 616 ntBASIC14.54□□□□□ -0.08
CCDC28BQ9BUN5 NDUFB2-202ENST00000460088 420 ntTSL 3 BASIC14.54□□□□□ -0.08
CCDC28BQ9BUN5 RCHY1-208ENST00000512706 1011 ntTSL 3 BASIC14.54□□□□□ -0.08
CCDC28BQ9BUN5 AC124067.4-202ENST00000522471 397 ntTSL 3 BASIC14.54□□□□□ -0.08
CCDC28BQ9BUN5 AC092364.2-202ENST00000597012 1073 ntBASIC14.54□□□□□ -0.08
CCDC28BQ9BUN5 HFE2-206ENST00000634927 506 ntTSL 4 BASIC14.54□□□□□ -0.08
CCDC28BQ9BUN5 HIST1H3D-202ENST00000635200 948 ntAPPRIS P1 TSL 3 BASIC14.54□□□□□ -0.08
CCDC28BQ9BUN5 AL583722.1-201ENST00000540171 1307 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
CCDC28BQ9BUN5 KLF11-205ENST00000535335 4033 ntAPPRIS ALT2 TSL 2 BASIC14.54□□□□□ -0.08
CCDC28BQ9BUN5 GOLGA6L2-201ENST00000312015 1379 ntAPPRIS ALT2 TSL 2 BASIC14.54□□□□□ -0.08
CCDC28BQ9BUN5 DUSP26-203ENST00000523956 1373 ntAPPRIS P1 TSL 5 BASIC14.54□□□□□ -0.08
CCDC28BQ9BUN5 UCN2-201ENST00000273610 1481 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
CCDC28BQ9BUN5 INSC-208ENST00000530161 1702 ntAPPRIS ALT2 TSL 1 (best) BASIC14.54□□□□□ -0.08
CCDC28BQ9BUN5 AC093520.1-201ENST00000567545 1767 ntTSL 5 BASIC14.54□□□□□ -0.08
CCDC28BQ9BUN5 PIGT-203ENST00000372689 1971 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
CCDC28BQ9BUN5 RABL2A-206ENST00000409842 1979 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
CCDC28BQ9BUN5 TMEM198B-201ENST00000471276 1958 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
CCDC28BQ9BUN5 TUBA8-202ENST00000330423 2018 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
CCDC28BQ9BUN5 ZFP30-201ENST00000351218 6090 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
CCDC28BQ9BUN5 AL139260.2-201ENST00000622355 2171 ntTSL 2 BASIC14.54□□□□□ -0.08
CCDC28BQ9BUN5 HIF3A-202ENST00000244303 2250 ntTSL 2 BASIC14.54□□□□□ -0.08
CCDC28BQ9BUN5 AC012617.1-204ENST00000586340 2305 ntBASIC14.54□□□□□ -0.08
CCDC28BQ9BUN5 DCST2-202ENST00000368424 2392 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
CCDC28BQ9BUN5 RABL2B-202ENST00000395590 2380 ntTSL 2 BASIC14.54□□□□□ -0.08
CCDC28BQ9BUN5 ATP5J2-PTCD1-201ENST00000413834 2491 ntAPPRIS P1 TSL 2 BASIC14.54□□□□□ -0.08
CCDC28BQ9BUN5 MARK1-201ENST00000366917 2946 ntAPPRIS P3 TSL 1 (best) BASIC14.54□□□□□ -0.08
CCDC28BQ9BUN5 APOB-202ENST00000399256 3128 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
CCDC28BQ9BUN5 KLHL13-207ENST00000540167 3396 ntTSL 2 BASIC14.54□□□□□ -0.08
CCDC28BQ9BUN5 MEFV-201ENST00000219596 3499 ntAPPRIS P2 TSL 1 (best) BASIC14.54□□□□□ -0.08
CCDC28BQ9BUN5 SLC4A7-213ENST00000454389 4159 ntAPPRIS ALT2 TSL 1 (best) BASIC14.54□□□□□ -0.08
CCDC28BQ9BUN5 NPFFR1-201ENST00000277942 8921 ntAPPRIS P1 TSL 5 BASIC14.53□□□□□ -0.08
CCDC28BQ9BUN5 PNPLA6-202ENST00000414982 4522 ntTSL 2 BASIC14.53□□□□□ -0.08
CCDC28BQ9BUN5 CRLS1-201ENST00000378863 3958 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
CCDC28BQ9BUN5 SH3BP5L-201ENST00000366472 3861 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
CCDC28BQ9BUN5 LINC01725-203ENST00000417975 3177 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
CCDC28BQ9BUN5 APBB1-203ENST00000389906 2684 ntAPPRIS ALT1 TSL 5 BASIC14.53□□□□□ -0.08
CCDC28BQ9BUN5 NFE2L2-202ENST00000397063 2651 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
CCDC28BQ9BUN5 ANO7-202ENST00000402430 2652 ntAPPRIS ALT2 TSL 5 BASIC14.53□□□□□ -0.08
CCDC28BQ9BUN5 APBB1-201ENST00000299402 2636 ntAPPRIS P3 TSL 5 BASIC14.53□□□□□ -0.08
CCDC28BQ9BUN5 INHBE-201ENST00000266646 2429 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
CCDC28BQ9BUN5 AC020658.7-201ENST00000624274 2442 ntBASIC14.53□□□□□ -0.08
CCDC28BQ9BUN5 MYADML-201ENST00000474610 2147 ntBASIC14.53□□□□□ -0.08
CCDC28BQ9BUN5 PRR30-201ENST00000335524 2008 ntAPPRIS P2 TSL 1 (best) BASIC14.53□□□□□ -0.08
CCDC28BQ9BUN5 ZNF417-203ENST00000595559 1975 ntAPPRIS ALT2 TSL 1 (best) BASIC14.53□□□□□ -0.08
CCDC28BQ9BUN5 DHRS4-AS1-204ENST00000555045 1848 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
CCDC28BQ9BUN5 THBS2-206ENST00000617924 5280 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
CCDC28BQ9BUN5 LINC01864-201ENST00000587218 1661 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
CCDC28BQ9BUN5 MBD1-207ENST00000398488 1512 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
CCDC28BQ9BUN5 ZC2HC1C-202ENST00000439583 1509 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
CCDC28BQ9BUN5 CALM3-212ENST00000599839 1355 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
CCDC28BQ9BUN5 PPIL6-202ENST00000424445 4031 ntTSL 5 BASIC14.53□□□□□ -0.08
CCDC28BQ9BUN5 LGALSL-201ENST00000238875 3926 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
CCDC28BQ9BUN5 C11orf52-201ENST00000278601 1141 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
CCDC28BQ9BUN5 KDM1B-201ENST00000297792 3811 ntAPPRIS P1 TSL 2 BASIC14.53□□□□□ -0.08
CCDC28BQ9BUN5 MRPL55-202ENST00000336300 722 ntAPPRIS P1 TSL 2 BASIC14.53□□□□□ -0.08
CCDC28BQ9BUN5 FGFR1-204ENST00000356207 3824 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
CCDC28BQ9BUN5 HIST3H2A-201ENST00000366695 895 ntAPPRIS P1 BASIC14.53□□□□□ -0.08
CCDC28BQ9BUN5 MRPL55-206ENST00000366732 722 ntTSL 3 BASIC14.53□□□□□ -0.08
CCDC28BQ9BUN5 JMJD7-203ENST00000408047 1192 ntTSL 5 BASIC14.53□□□□□ -0.08
CCDC28BQ9BUN5 CDH23-AS1-201ENST00000428918 378 ntTSL 2 BASIC14.53□□□□□ -0.08
CCDC28BQ9BUN5 INS-205ENST00000512523 297 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
CCDC28BQ9BUN5 SPCS2-202ENST00000526361 772 ntTSL 2 BASIC14.53□□□□□ -0.08
CCDC28BQ9BUN5 AL161757.4-201ENST00000554149 621 ntTSL 3 BASIC14.53□□□□□ -0.08
CCDC28BQ9BUN5 MIR4469-201ENST00000583919 79 ntBASIC14.53□□□□□ -0.08
CCDC28BQ9BUN5 MIR6074-201ENST00000612054 107 ntBASIC14.53□□□□□ -0.08
Retrieved 100 of 98,524 protein–RNA pairs in 77.5 ms