Protein–RNA interactions for Protein: Q96RU2

USP28, Ubiquitin carboxyl-terminal hydrolase 28, humanhuman

Predictions only

Length 1,077 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP28Q96RU2 BCRP1-201ENST00000444246 691 ntBASIC17.03■□□□□ 0.32
USP28Q96RU2 SHF-202ENST00000458022 1163 ntAPPRIS ALT2 TSL 2 BASIC17.03■□□□□ 0.32
USP28Q96RU2 AC006064.3-201ENST00000537921 477 ntTSL 4 BASIC17.03■□□□□ 0.32
USP28Q96RU2 LINC00928-204ENST00000561201 1123 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
USP28Q96RU2 DHRS7C-202ENST00000571134 984 ntAPPRIS ALT1 TSL 1 (best) BASIC17.03■□□□□ 0.32
USP28Q96RU2 AC004771.3-201ENST00000574260 551 ntTSL 4 BASIC17.03■□□□□ 0.32
USP28Q96RU2 PRCD-204ENST00000586148 630 ntAPPRIS P1 TSL 5 BASIC17.03■□□□□ 0.32
USP28Q96RU2 AC068473.4-201ENST00000587527 585 ntTSL 4 BASIC17.03■□□□□ 0.32
USP28Q96RU2 AC008770.3-202ENST00000591944 567 ntTSL 4 BASIC17.03■□□□□ 0.32
USP28Q96RU2 EIF6-209ENST00000621148 1054 ntAPPRIS P1 TSL 3 BASIC17.03■□□□□ 0.32
USP28Q96RU2 RPSAP52-203ENST00000622976 1023 ntBASIC17.03■□□□□ 0.32
USP28Q96RU2 KDELR2-201ENST00000258739 2884 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
USP28Q96RU2 SUOX-201ENST00000266971 2364 ntAPPRIS P1 TSL 2 BASIC17.03■□□□□ 0.32
USP28Q96RU2 MPP2-214ENST00000523501 2121 ntAPPRIS P1 TSL 2 BASIC17.03■□□□□ 0.32
USP28Q96RU2 SLK-201ENST00000335753 7673 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
USP28Q96RU2 APBB1IP-202ENST00000376236 2771 ntAPPRIS P1 TSL 5 BASIC17.03■□□□□ 0.32
USP28Q96RU2 GCNT7-201ENST00000243913 2064 ntTSL 2 BASIC17.03■□□□□ 0.32
USP28Q96RU2 LRP10-201ENST00000359591 6886 ntAPPRIS P2 TSL 1 (best) BASIC17.03■□□□□ 0.32
USP28Q96RU2 UBE2G2-202ENST00000345496 3566 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
USP28Q96RU2 TAGLN2-202ENST00000368096 1603 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
USP28Q96RU2 MAGEB2-201ENST00000378988 1610 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
USP28Q96RU2 NCKIPSD-204ENST00000416649 2925 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
USP28Q96RU2 MED4-201ENST00000258648 2022 ntAPPRIS P3 TSL 1 (best) BASIC17.03■□□□□ 0.32
USP28Q96RU2 AC011498.7-201ENST00000624986 2027 ntBASIC17.03■□□□□ 0.32
USP28Q96RU2 HS1BP3-203ENST00000406618 1375 ntTSL 2 BASIC17.02■□□□□ 0.32
USP28Q96RU2 AFF3-203ENST00000409579 4342 ntAPPRIS P3 TSL 5 BASIC17.02■□□□□ 0.32
USP28Q96RU2 ZKSCAN7-201ENST00000273320 3477 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
USP28Q96RU2 DDX41-208ENST00000507955 2607 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
USP28Q96RU2 GAS2L2-202ENST00000604641 3014 ntAPPRIS P2 TSL 1 (best) BASIC17.02■□□□□ 0.32
USP28Q96RU2 PRPH-201ENST00000257860 3245 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
USP28Q96RU2 AGPAT3-218ENST00000546158 2199 ntAPPRIS P1 TSL 5 BASIC17.02■□□□□ 0.32
USP28Q96RU2 LOXL3-202ENST00000393937 2398 ntTSL 5 BASIC17.02■□□□□ 0.32
USP28Q96RU2 TMEM127-201ENST00000258439 6266 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
USP28Q96RU2 ELN-203ENST00000320492 2991 ntAPPRIS ALT2 TSL 2 BASIC17.02■□□□□ 0.32
USP28Q96RU2 PIP4K2A-201ENST00000323883 1319 ntTSL 2 BASIC17.02■□□□□ 0.32
USP28Q96RU2 IL25-201ENST00000329715 1315 ntAPPRIS P3 TSL 1 (best) BASIC17.02■□□□□ 0.32
USP28Q96RU2 CLUHP2-201ENST00000426660 1303 ntBASIC17.02■□□□□ 0.32
USP28Q96RU2 TMEM51-204ENST00000428417 1942 ntAPPRIS P1 TSL 3 BASIC17.02■□□□□ 0.32
USP28Q96RU2 IL17RD-203ENST00000463523 2348 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
USP28Q96RU2 XRRA1-202ENST00000340360 5681 ntAPPRIS P1 TSL 5 BASIC17.02■□□□□ 0.32
USP28Q96RU2 GRIK5-201ENST00000262895 3493 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
USP28Q96RU2 UHRF1-204ENST00000616255 2661 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
USP28Q96RU2 WARS-203ENST00000358655 2466 ntTSL 2 BASIC17.02■□□□□ 0.32
USP28Q96RU2 LINC00665-203ENST00000438368 1863 ntTSL 5 BASIC17.02■□□□□ 0.32
USP28Q96RU2 CEP295NL-205ENST00000619342 1866 ntTSL 5 BASIC17.02■□□□□ 0.32
USP28Q96RU2 AC020910.6-201ENST00000623084 1459 ntBASIC17.02■□□□□ 0.32
USP28Q96RU2 BANF1-201ENST00000312175 1155 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
USP28Q96RU2 KRTAP19-7-201ENST00000334849 440 ntAPPRIS P1 BASIC17.02■□□□□ 0.32
USP28Q96RU2 ADAMTSL1-208ENST00000380570 931 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
USP28Q96RU2 AC236430.1-201ENST00000402231 743 ntBASIC17.02■□□□□ 0.32
USP28Q96RU2 HSPC324-201ENST00000411904 557 ntTSL 2 BASIC17.02■□□□□ 0.32
USP28Q96RU2 AL354761.2-202ENST00000430816 546 ntAPPRIS P1 TSL 5 BASIC17.02■□□□□ 0.32
USP28Q96RU2 AL162726.2-201ENST00000438986 1017 ntBASIC17.02■□□□□ 0.32
USP28Q96RU2 AC002472.2-201ENST00000442739 958 ntBASIC17.02■□□□□ 0.32
USP28Q96RU2 DERL3-208ENST00000476077 969 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.32
USP28Q96RU2 FAM104B-207ENST00000489298 712 ntAPPRIS ALT2 TSL 2 BASIC17.02■□□□□ 0.32
USP28Q96RU2 KRT18P25-201ENST00000508931 1278 ntBASIC17.02■□□□□ 0.32
USP28Q96RU2 GCOM2-201ENST00000509133 1104 ntBASIC17.02■□□□□ 0.32
USP28Q96RU2 PLXNC1-201ENST00000258526 7346 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
USP28Q96RU2 TDRD6-201ENST00000316081 6817 ntAPPRIS P3 TSL 1 (best) BASIC17.02■□□□□ 0.31
USP28Q96RU2 HHEX-202ENST00000472590 1605 ntTSL 2 BASIC17.02■□□□□ 0.31
USP28Q96RU2 SUOX-204ENST00000394115 2394 ntAPPRIS P1 TSL 2 BASIC17.02■□□□□ 0.31
USP28Q96RU2 CNN2-201ENST00000263097 2179 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
USP28Q96RU2 CYP4B1-201ENST00000271153 2171 ntAPPRIS P3 TSL 1 (best) BASIC17.02■□□□□ 0.31
USP28Q96RU2 CNN2-205ENST00000562958 2194 ntTSL 2 BASIC17.02■□□□□ 0.31
USP28Q96RU2 GOLGA8VP-201ENST00000559009 1798 ntBASIC17.02■□□□□ 0.31
USP28Q96RU2 MFAP3-201ENST00000322602 2891 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
USP28Q96RU2 PRAMEF8-202ENST00000614831 1592 ntAPPRIS P1 TSL 5 BASIC17.02■□□□□ 0.31
USP28Q96RU2 PRAMEF7-202ENST00000616979 1592 ntAPPRIS P1 TSL 5 BASIC17.02■□□□□ 0.31
USP28Q96RU2 AP002851.1-201ENST00000640504 2130 ntTSL 5 BASIC17.02■□□□□ 0.31
USP28Q96RU2 FBRS-201ENST00000287468 2811 ntAPPRIS P1 TSL 5 BASIC17.02■□□□□ 0.31
USP28Q96RU2 TPO-205ENST00000382201 2956 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
USP28Q96RU2 PTPN9-201ENST00000306726 3862 ntAPPRIS ALT2 TSL 5 BASIC17.01■□□□□ 0.31
USP28Q96RU2 CACNA2D1-201ENST00000356253 3858 ntTSL 5 BASIC17.01■□□□□ 0.31
USP28Q96RU2 CDIP1-205ENST00000563332 2774 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
USP28Q96RU2 ALDH1A3-202ENST00000346623 3104 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
USP28Q96RU2 CROCC-201ENST00000375541 6656 ntAPPRIS P1 TSL 5 BASIC17.01■□□□□ 0.31
USP28Q96RU2 GNPNAT1-203ENST00000554230 2238 ntTSL 5 BASIC17.01■□□□□ 0.31
USP28Q96RU2 DAGLA-201ENST00000257215 5757 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
USP28Q96RU2 USP47-207ENST00000527733 4525 ntAPPRIS P3 TSL 1 (best) BASIC17.01■□□□□ 0.31
USP28Q96RU2 HNRNPUL1-205ENST00000593587 2725 ntTSL 2 BASIC17.01■□□□□ 0.31
USP28Q96RU2 MRC2-202ENST00000446119 3201 ntTSL 2 BASIC17.01■□□□□ 0.31
USP28Q96RU2 BNIP3-201ENST00000368636 2861 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
USP28Q96RU2 ILK-201ENST00000299421 1802 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
USP28Q96RU2 FLJ16779-201ENST00000612722 7638 ntBASIC17.01■□□□□ 0.31
USP28Q96RU2 AC015688.4-201ENST00000580780 1647 ntBASIC17.01■□□□□ 0.31
USP28Q96RU2 NRDC-201ENST00000352171 3691 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
USP28Q96RU2 ZW10-201ENST00000200135 2992 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
USP28Q96RU2 ZSCAN2-203ENST00000334141 993 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
USP28Q96RU2 NCR3-201ENST00000340027 1042 ntAPPRIS P3 TSL 1 (best) BASIC17.01■□□□□ 0.31
USP28Q96RU2 POM121L8P-201ENST00000417732 1281 ntBASIC17.01■□□□□ 0.31
USP28Q96RU2 PABPN1L-202ENST00000419291 1272 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
USP28Q96RU2 POM121L9P-203ENST00000441984 1285 ntBASIC17.01■□□□□ 0.31
USP28Q96RU2 ZNF707-203ENST00000442058 562 ntTSL 4 BASIC17.01■□□□□ 0.31
USP28Q96RU2 FDPS-203ENST00000447866 1256 ntAPPRIS ALT1 TSL 5 BASIC17.01■□□□□ 0.31
USP28Q96RU2 AC140481.1-201ENST00000448777 706 ntTSL 3 BASIC17.01■□□□□ 0.31
USP28Q96RU2 HYAL1-208ENST00000457214 1084 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
USP28Q96RU2 TUBB3-203ENST00000553967 736 ntTSL 2 BASIC17.01■□□□□ 0.31
USP28Q96RU2 ZIM2-AS1-201ENST00000595954 2129 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
USP28Q96RU2 AC138696.2-201ENST00000607376 223 ntBASIC17.01■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 81.7 ms