Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 MPPE1-201ENST00000309976 1636 ntTSL 1 (best) BASIC11.53□□□□□ -0.56
CCDC140Q96MF4 C4B-AS1-205ENST00000415626 2095 ntTSL 2 BASIC11.53□□□□□ -0.56
CCDC140Q96MF4 C4A-AS1-204ENST00000458633 2095 ntTSL 2 BASIC11.53□□□□□ -0.56
CCDC140Q96MF4 THY1-206ENST00000528522 2050 ntAPPRIS P1 TSL 2 BASIC11.53□□□□□ -0.56
CCDC140Q96MF4 FKBP5-203ENST00000539068 3827 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
CCDC140Q96MF4 AC015802.1-201ENST00000588104 1449 ntBASIC11.53□□□□□ -0.56
CCDC140Q96MF4 AC022400.6-201ENST00000603027 5818 ntAPPRIS P5 TSL 2 BASIC11.53□□□□□ -0.56
CCDC140Q96MF4 GPRC5C-202ENST00000392627 2988 ntAPPRIS P3 TSL 1 (best) BASIC11.53□□□□□ -0.56
CCDC140Q96MF4 ZNF576-203ENST00000525771 2327 ntAPPRIS P1 TSL 2 BASIC11.53□□□□□ -0.56
CCDC140Q96MF4 VILL-202ENST00000383759 2787 ntAPPRIS P1 TSL 5 BASIC11.53□□□□□ -0.56
CCDC140Q96MF4 STAG3L2-201ENST00000426587 2130 ntTSL 2 BASIC11.53□□□□□ -0.56
CCDC140Q96MF4 AIFM2-202ENST00000373248 2570 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
CCDC140Q96MF4 ATL3-203ENST00000538786 1920 ntAPPRIS ALT2 TSL 2 BASIC11.53□□□□□ -0.56
CCDC140Q96MF4 CSTB-201ENST00000291568 2164 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
CCDC140Q96MF4 INSC-208ENST00000530161 1702 ntAPPRIS ALT2 TSL 1 (best) BASIC11.53□□□□□ -0.56
CCDC140Q96MF4 POLR2I-201ENST00000221859 913 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
CCDC140Q96MF4 CD79A-201ENST00000221972 1258 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
CCDC140Q96MF4 C9orf24-201ENST00000297623 1151 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
CCDC140Q96MF4 LBX2-201ENST00000341396 886 ntTSL 3 BASIC11.53□□□□□ -0.56
CCDC140Q96MF4 TRAPPC3-203ENST00000373163 951 ntTSL 3 BASIC11.53□□□□□ -0.56
CCDC140Q96MF4 C9orf24-205ENST00000379133 712 ntTSL 1 (best) BASIC11.53□□□□□ -0.56
CCDC140Q96MF4 GPR17-202ENST00000393018 1177 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
CCDC140Q96MF4 C15orf48-202ENST00000396650 732 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
CCDC140Q96MF4 PGF-202ENST00000405431 666 ntTSL 5 BASIC11.53□□□□□ -0.56
CCDC140Q96MF4 HIST1H2BPS3-201ENST00000419683 341 ntBASIC11.53□□□□□ -0.56
CCDC140Q96MF4 ARSEP1-201ENST00000420443 635 ntBASIC11.53□□□□□ -0.56
CCDC140Q96MF4 C9orf116-205ENST00000429260 678 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
CCDC140Q96MF4 AC099552.1-201ENST00000431083 744 ntTSL 5 BASIC11.53□□□□□ -0.56
CCDC140Q96MF4 RFPL4A-201ENST00000434937 1035 ntAPPRIS P1 TSL 5 BASIC11.53□□□□□ -0.56
CCDC140Q96MF4 CROCCP4-201ENST00000457096 498 ntBASIC11.53□□□□□ -0.56
CCDC140Q96MF4 IL12A-202ENST00000466512 1283 ntTSL 3 BASIC11.53□□□□□ -0.56
CCDC140Q96MF4 FHIT-208ENST00000492590 1081 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
CCDC140Q96MF4 AC078785.1-201ENST00000496389 734 ntTSL 3 BASIC11.53□□□□□ -0.56
CCDC140Q96MF4 RMDN1-212ENST00000519966 1164 ntTSL 2 BASIC11.53□□□□□ -0.56
CCDC140Q96MF4 AC116456.1-201ENST00000526646 815 ntTSL 3 BASIC11.53□□□□□ -0.56
CCDC140Q96MF4 AC018653.3-202ENST00000538062 735 ntTSL 3 BASIC11.53□□□□□ -0.56
CCDC140Q96MF4 AC138123.2-203ENST00000552451 653 ntTSL 3 BASIC11.53□□□□□ -0.56
CCDC140Q96MF4 LINC02279-201ENST00000553435 737 ntTSL 5 BASIC11.53□□□□□ -0.56
CCDC140Q96MF4 VASH1-AS1-201ENST00000554058 871 ntTSL 3 BASIC11.53□□□□□ -0.56
CCDC140Q96MF4 RPL28-206ENST00000558752 671 ntTSL 3 BASIC11.53□□□□□ -0.56
CCDC140Q96MF4 AC009133.1-202ENST00000563806 494 ntTSL 3 BASIC11.53□□□□□ -0.56
CCDC140Q96MF4 SPECC1-223ENST00000584527 940 ntTSL 3 BASIC11.53□□□□□ -0.56
CCDC140Q96MF4 AC107419.1-202ENST00000608735 1081 ntTSL 3 BASIC11.53□□□□□ -0.56
CCDC140Q96MF4 SNHG28-203ENST00000621242 708 ntAPPRIS P1 TSL 5 BASIC11.53□□□□□ -0.56
CCDC140Q96MF4 AC006453.4-201ENST00000636949 1252 ntBASIC11.53□□□□□ -0.56
CCDC140Q96MF4 MLF1-201ENST00000355893 2203 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
CCDC140Q96MF4 HCK-209ENST00000538448 2215 ntAPPRIS ALT2 TSL 2 BASIC11.53□□□□□ -0.56
CCDC140Q96MF4 WBP2-215ENST00000591399 2225 ntAPPRIS P2 TSL 5 BASIC11.53□□□□□ -0.56
CCDC140Q96MF4 PGA5-201ENST00000312403 1519 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
CCDC140Q96MF4 AL354989.2-201ENST00000435838 1540 ntBASIC11.53□□□□□ -0.56
CCDC140Q96MF4 KCNT1-208ENST00000488444 3696 ntAPPRIS ALT2 TSL 5 BASIC11.53□□□□□ -0.56
CCDC140Q96MF4 TOX3-201ENST00000219746 3233 ntAPPRIS P4 TSL 2 BASIC11.53□□□□□ -0.56
CCDC140Q96MF4 ELMSAN1-201ENST00000286523 8091 ntAPPRIS P2 TSL 1 (best) BASIC11.53□□□□□ -0.56
CCDC140Q96MF4 ALDOA-209ENST00000563060 1550 ntAPPRIS P2 TSL 1 (best) BASIC11.53□□□□□ -0.56
CCDC140Q96MF4 PSMG3-AS1-201ENST00000437621 5701 ntTSL 1 (best) BASIC11.53□□□□□ -0.56
CCDC140Q96MF4 SLC41A3-204ENST00000383598 2330 ntAPPRIS P3 TSL 2 BASIC11.53□□□□□ -0.56
CCDC140Q96MF4 LRRTM1-201ENST00000295057 2599 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
CCDC140Q96MF4 SLC4A9-203ENST00000506545 2838 ntTSL 1 (best) BASIC11.53□□□□□ -0.56
CCDC140Q96MF4 SUCO-204ENST00000608151 5790 ntTSL 5 BASIC11.53□□□□□ -0.56
CCDC140Q96MF4 KIAA0368-201ENST00000259335 7391 ntAPPRIS P2 TSL 1 (best) BASIC11.53□□□□□ -0.56
CCDC140Q96MF4 FOXP3-203ENST00000376207 2382 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
CCDC140Q96MF4 ANKRD30BP2-201ENST00000435744 1610 ntBASIC11.53□□□□□ -0.56
CCDC140Q96MF4 ADGRA1-AS1-202ENST00000444433 2646 ntTSL 3 BASIC11.53□□□□□ -0.56
CCDC140Q96MF4 UBE3A-227ENST00000638011 8742 ntAPPRIS ALT1 TSL 5 BASIC11.53□□□□□ -0.56
CCDC140Q96MF4 PDE7A-203ENST00000401827 3673 ntAPPRIS ALT1 TSL 1 (best) BASIC11.53□□□□□ -0.56
CCDC140Q96MF4 LPAR5-201ENST00000329858 3171 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
CCDC140Q96MF4 PRNP-201ENST00000379440 2657 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
CCDC140Q96MF4 ALDH4A1-205ENST00000538309 1940 ntTSL 2 BASIC11.52□□□□□ -0.56
CCDC140Q96MF4 STAM-202ENST00000377524 2972 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.56
CCDC140Q96MF4 HARS2-202ENST00000448069 1426 ntTSL 2 BASIC11.52□□□□□ -0.56
CCDC140Q96MF4 FAM153A-220ENST00000513554 1437 ntAPPRIS ALT2 TSL 5 BASIC11.52□□□□□ -0.56
CCDC140Q96MF4 CHPF2-204ENST00000495645 2709 ntTSL 2 BASIC11.52□□□□□ -0.56
CCDC140Q96MF4 IMPACT-201ENST00000284202 3792 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.56
CCDC140Q96MF4 HSDL1-201ENST00000219439 3519 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.56
CCDC140Q96MF4 BLOC1S6-212ENST00000566753 1996 ntTSL 2 BASIC11.52□□□□□ -0.56
CCDC140Q96MF4 SP6-201ENST00000342234 3800 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.56
CCDC140Q96MF4 OSBPL5-202ENST00000348039 2798 ntTSL 2 BASIC11.52□□□□□ -0.56
CCDC140Q96MF4 COCH-202ENST00000396618 2536 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.56
CCDC140Q96MF4 FECH-201ENST00000262093 3853 ntAPPRIS P3 TSL 1 (best) BASIC11.52□□□□□ -0.56
CCDC140Q96MF4 LINC00839-202ENST00000429940 2253 ntTSL 2 BASIC11.52□□□□□ -0.56
CCDC140Q96MF4 SUGP2-202ENST00000337018 3640 ntAPPRIS P3 TSL 1 (best) BASIC11.52□□□□□ -0.56
CCDC140Q96MF4 ATP2A3-204ENST00000397035 4182 ntTSL 5 BASIC11.52□□□□□ -0.56
CCDC140Q96MF4 LATS2-201ENST00000382592 5511 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.56
CCDC140Q96MF4 AC243964.3-201ENST00000623022 2028 ntBASIC11.52□□□□□ -0.56
CCDC140Q96MF4 DLX6-202ENST00000518156 2304 ntAPPRIS P2 TSL 1 (best) BASIC11.52□□□□□ -0.57
CCDC140Q96MF4 KDM5C-205ENST00000404049 5677 ntAPPRIS ALT2 TSL 1 (best) BASIC11.52□□□□□ -0.57
CCDC140Q96MF4 PDIA3P1-201ENST00000471856 1510 ntBASIC11.52□□□□□ -0.57
CCDC140Q96MF4 AFF3-203ENST00000409579 4342 ntAPPRIS P3 TSL 5 BASIC11.52□□□□□ -0.57
CCDC140Q96MF4 ANGPTL8-201ENST00000252453 872 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
CCDC140Q96MF4 ZNF324B-201ENST00000336614 2996 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
CCDC140Q96MF4 AC011450.1-202ENST00000358234 573 ntTSL 4 BASIC11.52□□□□□ -0.57
CCDC140Q96MF4 LCE1E-202ENST00000368771 575 ntAPPRIS P2 TSL 3 BASIC11.52□□□□□ -0.57
CCDC140Q96MF4 CD8B2-202ENST00000417670 633 ntBASIC11.52□□□□□ -0.57
CCDC140Q96MF4 AL583835.2-202ENST00000421363 1104 ntTSL 1 (best) BASIC11.52□□□□□ -0.57
CCDC140Q96MF4 AC018467.1-201ENST00000421581 717 ntTSL 5 BASIC11.52□□□□□ -0.57
CCDC140Q96MF4 USB1-202ENST00000423271 1217 ntTSL 2 BASIC11.52□□□□□ -0.57
CCDC140Q96MF4 LINC02158-201ENST00000432377 897 ntTSL 1 (best) BASIC11.52□□□□□ -0.57
CCDC140Q96MF4 FAM8A4P-201ENST00000435433 1213 ntBASIC11.52□□□□□ -0.57
CCDC140Q96MF4 SFTPC-202ENST00000437090 773 ntTSL 3 BASIC11.52□□□□□ -0.57
CCDC140Q96MF4 DGCR5-204ENST00000440005 1299 ntTSL 1 (best) BASIC11.52□□□□□ -0.57
Retrieved 100 of 98,524 protein–RNA pairs in 33.9 ms