Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 TOM1-206ENST00000425375 2252 ntTSL 2 BASIC17.46■□□□□ 0.39
SMC1BQ8NDV3 C11orf71-202ENST00000623205 1980 ntAPPRIS ALT2 BASIC17.46■□□□□ 0.39
SMC1BQ8NDV3 SLC6A9-207ENST00000475075 1881 ntTSL 2 BASIC17.46■□□□□ 0.39
SMC1BQ8NDV3 PORCN-201ENST00000326194 1755 ntAPPRIS P4 TSL 1 (best) BASIC17.46■□□□□ 0.39
SMC1BQ8NDV3 SHROOM2-201ENST00000380913 7447 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
SMC1BQ8NDV3 PLXDC2-202ENST00000377242 2822 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
SMC1BQ8NDV3 BABAM2-204ENST00000379624 1657 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
SMC1BQ8NDV3 TMCO5B-204ENST00000529696 1568 ntTSL 2 BASIC17.46■□□□□ 0.39
SMC1BQ8NDV3 LRRC14-205ENST00000529022 2243 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
SMC1BQ8NDV3 PPP1R26-202ENST00000401470 4769 ntAPPRIS P1 TSL 5 BASIC17.46■□□□□ 0.39
SMC1BQ8NDV3 OTOS-201ENST00000319460 566 ntAPPRIS P1 TSL 5 BASIC17.46■□□□□ 0.39
SMC1BQ8NDV3 AQP7-202ENST00000377425 1068 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
SMC1BQ8NDV3 PPM1N-205ENST00000401705 771 ntTSL 3 BASIC17.46■□□□□ 0.39
SMC1BQ8NDV3 GSTT2B-202ENST00000404172 819 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
SMC1BQ8NDV3 TPRKB-203ENST00000409716 816 ntTSL 5 BASIC17.46■□□□□ 0.39
SMC1BQ8NDV3 CDK2-203ENST00000440311 1031 ntTSL 2 BASIC17.46■□□□□ 0.39
SMC1BQ8NDV3 HIST1H2APS2-201ENST00000454426 370 ntBASIC17.46■□□□□ 0.39
SMC1BQ8NDV3 LINC01875-201ENST00000454477 660 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
SMC1BQ8NDV3 IGKV1OR-2-201ENST00000457995 350 ntBASIC17.46■□□□□ 0.39
SMC1BQ8NDV3 RPL18AP8-201ENST00000486071 528 ntBASIC17.46■□□□□ 0.39
SMC1BQ8NDV3 IMMP1L-202ENST00000526776 469 ntTSL 3 BASIC17.46■□□□□ 0.39
SMC1BQ8NDV3 CDIPT-AS1-202ENST00000565014 729 ntTSL 2 BASIC17.46■□□□□ 0.39
SMC1BQ8NDV3 AC003006.1-202ENST00000594684 612 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
SMC1BQ8NDV3 RNF103-CHMP3-202ENST00000604011 1135 ntAPPRIS P1 TSL 2 BASIC17.46■□□□□ 0.39
SMC1BQ8NDV3 LAP3-211ENST00000618908 2100 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
SMC1BQ8NDV3 AC011451.3-201ENST00000634951 582 ntTSL 3 BASIC17.46■□□□□ 0.39
SMC1BQ8NDV3 KCNQ2-236ENST00000637193 2983 ntTSL 5 BASIC17.46■□□□□ 0.39
SMC1BQ8NDV3 ZNF703-201ENST00000331569 3349 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
SMC1BQ8NDV3 AC069281.2-201ENST00000485071 4401 ntTSL 2 BASIC17.46■□□□□ 0.39
SMC1BQ8NDV3 TUBB4B-201ENST00000340384 1637 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
SMC1BQ8NDV3 NUS1-201ENST00000368494 4676 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
SMC1BQ8NDV3 CTSL-203ENST00000343150 2177 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
SMC1BQ8NDV3 SH3BP4-203ENST00000409212 5231 ntAPPRIS P1 TSL 5 BASIC17.46■□□□□ 0.39
SMC1BQ8NDV3 PPP1R18-206ENST00000615892 1448 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
SMC1BQ8NDV3 ZNF79-204ENST00000617266 1969 ntTSL 3 BASIC17.46■□□□□ 0.39
SMC1BQ8NDV3 DYNLL2-201ENST00000579991 6805 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.38
SMC1BQ8NDV3 CYP4F2-202ENST00000221700 2407 ntAPPRIS P2 TSL 1 (best) BASIC17.46■□□□□ 0.38
SMC1BQ8NDV3 CD300A-202ENST00000360141 1858 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.38
SMC1BQ8NDV3 AL360270.3-201ENST00000609118 1348 ntBASIC17.46■□□□□ 0.38
SMC1BQ8NDV3 ILVBL-201ENST00000263383 2304 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.38
SMC1BQ8NDV3 ALAS2-202ENST00000335854 1795 ntTSL 2 BASIC17.45■□□□□ 0.38
SMC1BQ8NDV3 DMTN-223ENST00000523782 2235 ntAPPRIS P1 TSL 5 BASIC17.45■□□□□ 0.38
SMC1BQ8NDV3 TRPC4AP-202ENST00000451813 3138 ntTSL 2 BASIC17.45■□□□□ 0.38
SMC1BQ8NDV3 ADARB1-204ENST00000389863 3563 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
SMC1BQ8NDV3 KCNG3-201ENST00000306078 3824 ntAPPRIS P3 TSL 1 (best) BASIC17.45■□□□□ 0.38
SMC1BQ8NDV3 C12orf29-201ENST00000356891 2919 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
SMC1BQ8NDV3 TOM1-204ENST00000411850 2390 ntAPPRIS ALT1 TSL 1 (best) BASIC17.45■□□□□ 0.38
SMC1BQ8NDV3 AIFM1-201ENST00000287295 2260 ntAPPRIS P4 TSL 1 (best) BASIC17.45■□□□□ 0.38
SMC1BQ8NDV3 FGFR2-215ENST00000457416 3061 ntAPPRIS P3 TSL 1 (best) BASIC17.45■□□□□ 0.38
SMC1BQ8NDV3 RASGRP2-206ENST00000377494 2983 ntAPPRIS ALT1 TSL 2 BASIC17.45■□□□□ 0.38
SMC1BQ8NDV3 COLGALT2-201ENST00000361927 5177 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
SMC1BQ8NDV3 SARS2-201ENST00000221431 2057 ntAPPRIS P2 TSL 1 (best) BASIC17.45■□□□□ 0.38
SMC1BQ8NDV3 GAS7-213ENST00000580865 2417 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
SMC1BQ8NDV3 OPN1SW-201ENST00000249389 1096 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
SMC1BQ8NDV3 HIST1H2BF-201ENST00000356530 1196 ntAPPRIS P1 BASIC17.45■□□□□ 0.38
SMC1BQ8NDV3 AL035413.1-201ENST00000437898 507 ntTSL 2 BASIC17.45■□□□□ 0.38
SMC1BQ8NDV3 MYL7-209ENST00000458240 791 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
SMC1BQ8NDV3 HFE-209ENST00000461397 1045 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
SMC1BQ8NDV3 DMKN-229ENST00000467637 827 ntAPPRIS ALT2 TSL 5 BASIC17.45■□□□□ 0.38
SMC1BQ8NDV3 MUSTN1-202ENST00000486659 622 ntTSL 2 BASIC17.45■□□□□ 0.38
SMC1BQ8NDV3 GLUD1P3-201ENST00000507952 896 ntTSL 2 BASIC17.45■□□□□ 0.38
SMC1BQ8NDV3 RNA5SP406-201ENST00000516106 112 ntBASIC17.45■□□□□ 0.38
SMC1BQ8NDV3 AC090136.2-201ENST00000517809 420 ntBASIC17.45■□□□□ 0.38
SMC1BQ8NDV3 IFITM1-204ENST00000528780 730 ntAPPRIS P1 TSL 3 BASIC17.45■□□□□ 0.38
SMC1BQ8NDV3 AL022334.2-201ENST00000610000 484 ntBASIC17.45■□□□□ 0.38
SMC1BQ8NDV3 KLF3-AS1-207ENST00000620339 558 ntTSL 4 BASIC17.45■□□□□ 0.38
SMC1BQ8NDV3 AC129778.1-201ENST00000623957 920 ntTSL 5 BASIC17.45■□□□□ 0.38
SMC1BQ8NDV3 ST5-261ENST00000626808 1071 ntTSL 5 BASIC17.45■□□□□ 0.38
SMC1BQ8NDV3 TXNDC9-201ENST00000264255 1637 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
SMC1BQ8NDV3 TSKU-205ENST00000612930 2666 ntAPPRIS P1 TSL 4 BASIC17.45■□□□□ 0.38
SMC1BQ8NDV3 FRMD5-202ENST00000417257 5011 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
SMC1BQ8NDV3 PTHLH-201ENST00000201015 1872 ntAPPRIS P3 TSL 3 BASIC17.45■□□□□ 0.38
SMC1BQ8NDV3 FYCO1-205ENST00000535325 8578 ntAPPRIS ALT2 TSL 5 BASIC17.45■□□□□ 0.38
SMC1BQ8NDV3 AP001372.2-201ENST00000526036 2493 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
SMC1BQ8NDV3 HSPB7-204ENST00000411503 2128 ntAPPRIS ALT1 TSL 1 (best) BASIC17.45■□□□□ 0.38
SMC1BQ8NDV3 SCART1-206ENST00000640237 4351 ntAPPRIS P1 TSL 5 BASIC17.45■□□□□ 0.38
SMC1BQ8NDV3 PTGES3L-AARSD1-202ENST00000409103 1670 ntTSL 5 BASIC17.45■□□□□ 0.38
SMC1BQ8NDV3 AC006449.6-201ENST00000612330 2296 ntBASIC17.45■□□□□ 0.38
SMC1BQ8NDV3 EPHA8-201ENST00000166244 4943 ntAPPRIS P1 TSL 2 BASIC17.45■□□□□ 0.38
SMC1BQ8NDV3 ACRBP-201ENST00000229243 1933 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
SMC1BQ8NDV3 FGFR3-204ENST00000412135 3951 ntTSL 5 BASIC17.45■□□□□ 0.38
SMC1BQ8NDV3 TRMT44-201ENST00000389737 2799 ntAPPRIS P2 TSL 5 BASIC17.45■□□□□ 0.38
SMC1BQ8NDV3 YIPF3-202ENST00000372422 1576 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
SMC1BQ8NDV3 CSK-210ENST00000567571 2443 ntAPPRIS P1 TSL 2 BASIC17.45■□□□□ 0.38
SMC1BQ8NDV3 ARID4B-202ENST00000349213 5811 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
SMC1BQ8NDV3 AC006449.5-201ENST00000610658 2098 ntBASIC17.44■□□□□ 0.38
SMC1BQ8NDV3 SPOCK2-202ENST00000373109 5445 ntAPPRIS P2 TSL 1 (best) BASIC17.44■□□□□ 0.38
SMC1BQ8NDV3 UCKL1-203ENST00000369908 1954 ntAPPRIS P1 TSL 2 BASIC17.44■□□□□ 0.38
SMC1BQ8NDV3 TRPV4-207ENST00000541794 2475 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
SMC1BQ8NDV3 CPXM1-201ENST00000380605 2391 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
SMC1BQ8NDV3 SP100-204ENST00000409341 1898 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
SMC1BQ8NDV3 API5-208ENST00000531273 1868 ntTSL 2 BASIC17.44■□□□□ 0.38
SMC1BQ8NDV3 YTHDF3-215ENST00000621957 2387 ntAPPRIS ALT1 TSL 5 BASIC17.44■□□□□ 0.38
SMC1BQ8NDV3 GUCY1A2-202ENST00000347596 2532 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
SMC1BQ8NDV3 DOC2GP-204ENST00000639052 2548 ntBASIC17.44■□□□□ 0.38
SMC1BQ8NDV3 MPI-203ENST00000535694 1523 ntTSL 2 BASIC17.44■□□□□ 0.38
SMC1BQ8NDV3 LRP8-207ENST00000465675 2670 ntTSL 2 BASIC17.44■□□□□ 0.38
SMC1BQ8NDV3 KRTAP19-5-201ENST00000334151 461 ntAPPRIS P1 BASIC17.44■□□□□ 0.38
SMC1BQ8NDV3 CHTF8-202ENST00000398235 1073 ntAPPRIS P1 TSL 2 BASIC17.44■□□□□ 0.38
SMC1BQ8NDV3 AC018638.5-201ENST00000450885 754 ntBASIC17.44■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 33.2 ms