Protein–RNA interactions for Protein: Q6P4E1

CASC4, Protein CASC4, humanhuman

Predictions only

Length 433 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CASC4Q6P4E1 H2BFWT-201ENST00000217926 894 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
CASC4Q6P4E1 CXorf40A-201ENST00000359293 974 ntAPPRIS P3 TSL 2 BASIC15.28■□□□□ 0.04
CASC4Q6P4E1 PRKN-203ENST00000366894 1157 ntTSL 5 BASIC15.28■□□□□ 0.04
CASC4Q6P4E1 TMEM26-AS1-201ENST00000389640 863 ntTSL 5 BASIC15.28■□□□□ 0.04
CASC4Q6P4E1 AL022068.1-202ENST00000432171 794 ntTSL 3 BASIC15.28■□□□□ 0.04
CASC4Q6P4E1 TMPRSS11CP-201ENST00000453277 683 ntBASIC15.28■□□□□ 0.04
CASC4Q6P4E1 CD81-207ENST00000481687 890 ntTSL 2 BASIC15.28■□□□□ 0.04
CASC4Q6P4E1 GLI4-203ENST00000517468 963 ntTSL 5 BASIC15.28■□□□□ 0.04
CASC4Q6P4E1 AC100818.1-201ENST00000524167 563 ntTSL 4 BASIC15.28■□□□□ 0.04
CASC4Q6P4E1 AP001582.1-201ENST00000525856 295 ntBASIC15.28■□□□□ 0.04
CASC4Q6P4E1 RRP7BP-205ENST00000566851 833 ntBASIC15.28■□□□□ 0.04
CASC4Q6P4E1 MYMX-202ENST00000576476 682 ntAPPRIS P1 TSL 3 BASIC15.28■□□□□ 0.04
CASC4Q6P4E1 AC005306.1-201ENST00000587498 661 ntTSL 3 BASIC15.28■□□□□ 0.04
CASC4Q6P4E1 DUSP13-214ENST00000607131 1019 ntAPPRIS P3 TSL 1 (best) BASIC15.28■□□□□ 0.04
CASC4Q6P4E1 AC243773.2-203ENST00000612281 640 ntTSL 3 BASIC15.28■□□□□ 0.04
CASC4Q6P4E1 AC007431.3-201ENST00000623221 587 ntBASIC15.28■□□□□ 0.04
CASC4Q6P4E1 SLC35D1-201ENST00000235345 6162 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
CASC4Q6P4E1 PHF14-201ENST00000403050 4276 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
CASC4Q6P4E1 VCAN-211ENST00000513984 1825 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
CASC4Q6P4E1 LGALS8-203ENST00000341872 2437 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
CASC4Q6P4E1 ABCG1-201ENST00000343687 3037 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
CASC4Q6P4E1 GID4-201ENST00000268719 4237 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
CASC4Q6P4E1 SP140L-204ENST00000444636 1781 ntTSL 5 BASIC15.28■□□□□ 0.04
CASC4Q6P4E1 C21orf58-202ENST00000397679 2900 ntAPPRIS ALT2 TSL 2 BASIC15.28■□□□□ 0.04
CASC4Q6P4E1 AC004754.1-201ENST00000600536 2242 ntAPPRIS P1 TSL 5 BASIC15.28■□□□□ 0.04
CASC4Q6P4E1 GABPB1-202ENST00000359031 1633 ntTSL 5 BASIC15.28■□□□□ 0.04
CASC4Q6P4E1 KCND3-201ENST00000302127 2659 ntAPPRIS ALT1 TSL 5 BASIC15.28■□□□□ 0.04
CASC4Q6P4E1 LETMD1-203ENST00000418425 2123 ntTSL 2 BASIC15.28■□□□□ 0.04
CASC4Q6P4E1 FAM103A1-201ENST00000304191 1568 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
CASC4Q6P4E1 PSMD13-215ENST00000621534 1572 ntTSL 5 BASIC15.28■□□□□ 0.04
CASC4Q6P4E1 XRCC3-211ENST00000555055 2584 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
CASC4Q6P4E1 ECSIT-201ENST00000252440 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.04
CASC4Q6P4E1 RDM1-224ENST00000619262 1535 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.04
CASC4Q6P4E1 ARHGEF3-212ENST00000495373 2024 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
CASC4Q6P4E1 SIGLEC9-202ENST00000440804 1960 ntAPPRIS ALT2 TSL 2 BASIC15.27■□□□□ 0.04
CASC4Q6P4E1 CDH3-201ENST00000264012 4929 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
CASC4Q6P4E1 FBP1-203ENST00000415431 1487 ntAPPRIS P1 TSL 2 BASIC15.27■□□□□ 0.04
CASC4Q6P4E1 OPN4-202ENST00000372071 2401 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
CASC4Q6P4E1 TSPAN14-210ENST00000616406 2436 ntTSL 2 BASIC15.27■□□□□ 0.04
CASC4Q6P4E1 ADD1-204ENST00000398123 2361 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
CASC4Q6P4E1 BORCS8-MEF2B-203ENST00000514819 1406 ntAPPRIS ALT2 TSL 5 BASIC15.27■□□□□ 0.04
CASC4Q6P4E1 POLR2E-213ENST00000615234 2831 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
CASC4Q6P4E1 ADCYAP1R1-207ENST00000614107 6575 ntAPPRIS ALT2 TSL 5 BASIC15.27■□□□□ 0.04
CASC4Q6P4E1 KIF17-203ENST00000400463 3731 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.04
CASC4Q6P4E1 TMCC2-202ENST00000330675 2780 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
CASC4Q6P4E1 SEC13-201ENST00000337354 1363 ntAPPRIS ALT1 TSL 1 (best) BASIC15.27■□□□□ 0.04
CASC4Q6P4E1 KDM2B-202ENST00000377071 4595 ntAPPRIS P4 TSL 1 (best) BASIC15.27■□□□□ 0.04
CASC4Q6P4E1 MFSD11-211ENST00000588460 3612 ntAPPRIS P1 TSL 2 BASIC15.27■□□□□ 0.04
CASC4Q6P4E1 POLG-201ENST00000268124 4500 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
CASC4Q6P4E1 PLAU-202ENST00000446342 2658 ntAPPRIS ALT2 TSL 2 BASIC15.27■□□□□ 0.04
CASC4Q6P4E1 IQCE-201ENST00000325979 2179 ntAPPRIS ALT2 TSL 5 BASIC15.27■□□□□ 0.04
CASC4Q6P4E1 POMT1-204ENST00000402686 3038 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
CASC4Q6P4E1 GRK6P1-201ENST00000400595 1711 ntBASIC15.27■□□□□ 0.04
CASC4Q6P4E1 ACIN1-203ENST00000357481 2563 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
CASC4Q6P4E1 COX6A1-201ENST00000229379 572 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
CASC4Q6P4E1 SIVA1-202ENST00000347067 550 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
CASC4Q6P4E1 TMEM147-AS1-201ENST00000444728 487 ntTSL 3 BASIC15.27■□□□□ 0.04
CASC4Q6P4E1 AL033519.3-201ENST00000450618 595 ntTSL 5 BASIC15.27■□□□□ 0.04
CASC4Q6P4E1 AC093004.1-201ENST00000508850 424 ntBASIC15.27■□□□□ 0.04
CASC4Q6P4E1 SPSB2-204ENST00000523102 1205 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
CASC4Q6P4E1 SPSB2-205ENST00000524270 1236 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
CASC4Q6P4E1 IL32-215ENST00000529550 772 ntAPPRIS P4 TSL 3 BASIC15.27■□□□□ 0.04
CASC4Q6P4E1 LINC02356-202ENST00000552663 314 ntTSL 3 BASIC15.27■□□□□ 0.04
CASC4Q6P4E1 LINC01220-201ENST00000558575 715 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
CASC4Q6P4E1 AC138304.1-201ENST00000563841 424 ntTSL 3 BASIC15.27■□□□□ 0.04
CASC4Q6P4E1 AC120045.2-201ENST00000567334 178 ntBASIC15.27■□□□□ 0.04
CASC4Q6P4E1 RPS15-202ENST00000585665 467 ntTSL 3 BASIC15.27■□□□□ 0.04
CASC4Q6P4E1 AC005262.2-201ENST00000587701 452 ntTSL 5 BASIC15.27■□□□□ 0.04
CASC4Q6P4E1 LINC01515-215ENST00000608678 854 ntTSL 5 BASIC15.27■□□□□ 0.04
CASC4Q6P4E1 EPB41L1-202ENST00000338074 6266 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.03
CASC4Q6P4E1 FBXO21-202ENST00000427718 4138 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
CASC4Q6P4E1 FARP2-201ENST00000264042 4051 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
CASC4Q6P4E1 RHD-206ENST00000423810 1637 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
CASC4Q6P4E1 OSBPL5-202ENST00000348039 2798 ntTSL 2 BASIC15.27■□□□□ 0.03
CASC4Q6P4E1 MAPT-206ENST00000415613 2331 ntAPPRIS ALT2 TSL 5 BASIC15.27■□□□□ 0.03
CASC4Q6P4E1 TSFM-207ENST00000540550 1935 ntTSL 2 BASIC15.27■□□□□ 0.03
CASC4Q6P4E1 PRNP-201ENST00000379440 2657 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
CASC4Q6P4E1 CD300C-201ENST00000330793 1517 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
CASC4Q6P4E1 C12orf42-201ENST00000378113 1513 ntAPPRIS P2 TSL 5 BASIC15.27■□□□□ 0.03
CASC4Q6P4E1 TOM1L1-201ENST00000348161 1895 ntTSL 2 BASIC15.27■□□□□ 0.03
CASC4Q6P4E1 GNB1L-201ENST00000329517 6706 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
CASC4Q6P4E1 TSPAN18-207ENST00000520358 3316 ntAPPRIS P1 TSL 5 BASIC15.27■□□□□ 0.03
CASC4Q6P4E1 CBFA2T3-202ENST00000327483 4033 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.03
CASC4Q6P4E1 ZNF655-201ENST00000252713 2535 ntAPPRIS P3 TSL 1 (best) BASIC15.26■□□□□ 0.03
CASC4Q6P4E1 PPP1R27-202ENST00000570394 1443 ntTSL 2 BASIC15.26■□□□□ 0.03
CASC4Q6P4E1 TBP-207ENST00000616883 1750 ntAPPRIS ALT2 TSL 5 BASIC15.26■□□□□ 0.03
CASC4Q6P4E1 SLC4A7-213ENST00000454389 4159 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
CASC4Q6P4E1 SH3PXD2B-203ENST00000519643 1394 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
CASC4Q6P4E1 NFYA-202ENST00000353205 1660 ntTSL 5 BASIC15.26■□□□□ 0.03
CASC4Q6P4E1 GRAPL-201ENST00000344415 1308 ntAPPRIS P2 TSL 1 (best) BASIC15.26■□□□□ 0.03
CASC4Q6P4E1 TNK2-202ENST00000381916 4223 ntTSL 2 BASIC15.26■□□□□ 0.03
CASC4Q6P4E1 CTD-2194D22.4-201ENST00000514569 1635 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
CASC4Q6P4E1 TICRR-201ENST00000268138 6775 ntAPPRIS P3 TSL 5 BASIC15.26■□□□□ 0.03
CASC4Q6P4E1 MLXIPL-203ENST00000354613 3215 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
CASC4Q6P4E1 PPP1R12A-AS1-201ENST00000552885 3234 ntTSL 3 BASIC15.26■□□□□ 0.03
CASC4Q6P4E1 CORO7-201ENST00000251166 3540 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
CASC4Q6P4E1 BTN1A1-201ENST00000244513 2895 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
CASC4Q6P4E1 HIST2H3D-201ENST00000331491 411 ntAPPRIS P1 BASIC15.26■□□□□ 0.03
CASC4Q6P4E1 CCL25-203ENST00000390669 924 ntAPPRIS P3 TSL 1 (best) BASIC15.26■□□□□ 0.03
CASC4Q6P4E1 HIST2H3PS2-201ENST00000392948 411 ntAPPRIS P1 BASIC15.26■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 708 ms