Protein–RNA interactions for Protein: P55285

CDH6, Cadherin-6, humanhuman

Predictions only

Length 790 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH6P55285 YTHDF3-216ENST00000623280 5193 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
CDH6P55285 BARHL2-201ENST00000370445 1979 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
CDH6P55285 GCC1-201ENST00000321407 4149 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
CDH6P55285 LEMD3-201ENST00000308330 4764 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
CDH6P55285 RNF157-AS1-204ENST00000590137 1812 ntTSL 2 BASIC15.54■□□□□ 0.08
CDH6P55285 TJP2-208ENST00000535702 3984 ntAPPRIS ALT2 TSL 2 BASIC15.54■□□□□ 0.08
CDH6P55285 ANKEF1-201ENST00000378380 5303 ntAPPRIS P1 TSL 2 BASIC15.54■□□□□ 0.08
CDH6P55285 HNF4G-201ENST00000354370 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC15.54■□□□□ 0.08
CDH6P55285 KCTD10-208ENST00000540089 3096 ntTSL 2 BASIC15.54■□□□□ 0.08
CDH6P55285 AFAP1-204ENST00000420658 7768 ntAPPRIS ALT1 TSL 2 BASIC15.54■□□□□ 0.08
CDH6P55285 TBC1D2-201ENST00000342112 3046 ntTSL 2 BASIC15.54■□□□□ 0.08
CDH6P55285 TMEM258-207ENST00000543510 1692 ntTSL 2 BASIC15.54■□□□□ 0.08
CDH6P55285 LETMD1-206ENST00000547008 1665 ntTSL 2 BASIC15.54■□□□□ 0.08
CDH6P55285 ELFN2-207ENST00000613079 8360 ntAPPRIS P1 TSL 4 BASIC15.54■□□□□ 0.08
CDH6P55285 TRMT11-201ENST00000334379 1565 ntAPPRIS P2 TSL 1 (best) BASIC15.53■□□□□ 0.08
CDH6P55285 NUP54-217ENST00000514987 1563 ntTSL 2 BASIC15.53■□□□□ 0.08
CDH6P55285 GSPT1-202ENST00000434724 7105 ntAPPRIS P4 TSL 1 (best) BASIC15.53■□□□□ 0.08
CDH6P55285 KLF11-205ENST00000535335 4033 ntAPPRIS ALT2 TSL 2 BASIC15.53■□□□□ 0.08
CDH6P55285 OSBPL5-202ENST00000348039 2798 ntTSL 2 BASIC15.53■□□□□ 0.08
CDH6P55285 ALOX15-202ENST00000570836 2784 ntAPPRIS P1 TSL 2 BASIC15.53■□□□□ 0.08
CDH6P55285 SPAG9-222ENST00000618113 8246 ntAPPRIS ALT1 TSL 5 BASIC15.53■□□□□ 0.08
CDH6P55285 AL669918.1-201ENST00000452392 2705 ntAPPRIS P1 TSL 2 BASIC15.53■□□□□ 0.08
CDH6P55285 TDRD12-202ENST00000444215 3934 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
CDH6P55285 DNAJC19-201ENST00000382564 1453 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
CDH6P55285 FANCG-201ENST00000378643 2631 ntAPPRIS P2 TSL 1 (best) BASIC15.53■□□□□ 0.08
CDH6P55285 NR4A1-213ENST00000550082 2029 ntTSL 5 BASIC15.53■□□□□ 0.08
CDH6P55285 GPR83-201ENST00000243673 4282 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
CDH6P55285 AC015802.1-201ENST00000588104 1449 ntBASIC15.53■□□□□ 0.08
CDH6P55285 GPRASP1-205ENST00000537097 5980 ntAPPRIS P1 TSL 2 BASIC15.53■□□□□ 0.08
CDH6P55285 DDX17-202ENST00000396821 4791 ntAPPRIS ALT2 TSL 1 (best) BASIC15.53■□□□□ 0.08
CDH6P55285 DMTN-205ENST00000432128 2508 ntTSL 5 BASIC15.53■□□□□ 0.08
CDH6P55285 ASNA1-204ENST00000591090 1368 ntAPPRIS P1 TSL 5 BASIC15.53■□□□□ 0.08
CDH6P55285 LINC01230-201ENST00000625222 3017 ntBASIC15.53■□□□□ 0.08
CDH6P55285 OPN4-202ENST00000372071 2401 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
CDH6P55285 FAM118B-210ENST00000627851 1862 ntTSL 5 BASIC15.53■□□□□ 0.08
CDH6P55285 LINC00667-206ENST00000582363 2935 ntTSL 2 BASIC15.53■□□□□ 0.08
CDH6P55285 CMA1-202ENST00000250378 937 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
CDH6P55285 NINJ2-201ENST00000305108 1252 ntAPPRIS P3 TSL 1 (best) BASIC15.53■□□□□ 0.08
CDH6P55285 VCX2-201ENST00000317103 815 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
CDH6P55285 EIF1AX-201ENST00000379593 765 ntTSL 3 BASIC15.53■□□□□ 0.08
CDH6P55285 ABHD11-AS1-201ENST00000427153 662 ntTSL 5 BASIC15.53■□□□□ 0.08
CDH6P55285 ADAMTSL1-210ENST00000431052 824 ntTSL 2 BASIC15.53■□□□□ 0.08
CDH6P55285 TMEM247-204ENST00000434431 680 ntAPPRIS P1 TSL 5 BASIC15.53■□□□□ 0.08
CDH6P55285 AC245100.3-201ENST00000441281 285 ntBASIC15.53■□□□□ 0.08
CDH6P55285 RN7SL837P-201ENST00000463010 287 ntBASIC15.53■□□□□ 0.08
CDH6P55285 SEPT7P9-202ENST00000489259 743 ntTSL 3 BASIC15.53■□□□□ 0.08
CDH6P55285 AC136601.1-201ENST00000521803 666 ntTSL 3 BASIC15.53■□□□□ 0.08
CDH6P55285 AP005018.1-201ENST00000525475 301 ntBASIC15.53■□□□□ 0.08
CDH6P55285 IL32-222ENST00000533097 814 ntAPPRIS P4 TSL 2 BASIC15.53■□□□□ 0.08
CDH6P55285 POLE2-203ENST00000553805 496 ntTSL 2 BASIC15.53■□□□□ 0.08
CDH6P55285 CYB5D1-202ENST00000570446 570 ntTSL 4 BASIC15.53■□□□□ 0.08
CDH6P55285 AIPL1-204ENST00000570466 1196 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
CDH6P55285 PIGL-212ENST00000581006 554 ntTSL 4 BASIC15.53■□□□□ 0.08
CDH6P55285 AC010641.1-201ENST00000591757 529 ntTSL 3 BASIC15.53■□□□□ 0.08
CDH6P55285 VCX-203ENST00000620630 812 ntAPPRIS ALT2 TSL 5 BASIC15.53■□□□□ 0.08
CDH6P55285 IL32-201ENST00000008180 1056 ntAPPRIS ALT2 TSL 2 BASIC15.53■□□□□ 0.08
CDH6P55285 ZC3HAV1-204ENST00000471652 3182 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
CDH6P55285 SLCO6A1-205ENST00000506729 2689 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
CDH6P55285 ABR-205ENST00000544583 5595 ntTSL 2 BASIC15.53■□□□□ 0.08
CDH6P55285 KIF7-201ENST00000394412 4551 ntAPPRIS P1 TSL 5 BASIC15.53■□□□□ 0.08
CDH6P55285 COL5A1-208ENST00000618395 8437 ntAPPRIS ALT2 TSL 5 BASIC15.53■□□□□ 0.08
CDH6P55285 TMCO3-202ENST00000434316 3050 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
CDH6P55285 JKAMP-207ENST00000554271 2137 ntTSL 2 BASIC15.53■□□□□ 0.08
CDH6P55285 GGT1-202ENST00000400380 2540 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
CDH6P55285 APCDD1L-201ENST00000371149 3426 ntAPPRIS P2 TSL 1 (best) BASIC15.53■□□□□ 0.08
CDH6P55285 CEP78-203ENST00000376598 2404 ntAPPRIS ALT2 TSL 5 BASIC15.53■□□□□ 0.08
CDH6P55285 CASC2-203ENST00000435944 3270 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
CDH6P55285 TBC1D16-209ENST00000576768 6342 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
CDH6P55285 CYP4X1-201ENST00000371901 2357 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
CDH6P55285 DMRT2-202ENST00000302441 1495 ntTSL 5 BASIC15.52■□□□□ 0.08
CDH6P55285 FLII-201ENST00000327031 4338 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
CDH6P55285 FOS-202ENST00000535987 1402 ntTSL 2 BASIC15.52■□□□□ 0.08
CDH6P55285 CU639417.3-201ENST00000624240 1404 ntBASIC15.52■□□□□ 0.08
CDH6P55285 SLC6A20-202ENST00000358525 5423 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
CDH6P55285 DEPDC7-201ENST00000241051 1755 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
CDH6P55285 HS1BP3-203ENST00000406618 1375 ntTSL 2 BASIC15.52■□□□□ 0.08
CDH6P55285 FBLN7-203ENST00000409450 1394 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
CDH6P55285 SOCS2-205ENST00000548537 3733 ntTSL 2 BASIC15.52■□□□□ 0.08
CDH6P55285 SPATA16-201ENST00000351008 2106 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
CDH6P55285 KIF19-202ENST00000389916 3643 ntAPPRIS P1 TSL 5 BASIC15.52■□□□□ 0.08
CDH6P55285 SLC25A36-201ENST00000324194 1301 ntAPPRIS ALT1 TSL 1 (best) BASIC15.52■□□□□ 0.08
CDH6P55285 AGGF1P1-201ENST00000509500 2073 ntBASIC15.52■□□□□ 0.08
CDH6P55285 ST20-AS1-201ENST00000560255 4223 ntBASIC15.52■□□□□ 0.08
CDH6P55285 EIF4G1-201ENST00000342981 5667 ntAPPRIS ALT1 TSL 1 (best) BASIC15.52■□□□□ 0.08
CDH6P55285 ZNRD1-201ENST00000332435 864 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
CDH6P55285 RUNDC1-201ENST00000361677 3828 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
CDH6P55285 CYB5R3-203ENST00000402438 1050 ntTSL 5 BASIC15.52■□□□□ 0.08
CDH6P55285 SNHG11-209ENST00000440918 556 ntTSL 3 BASIC15.52■□□□□ 0.08
CDH6P55285 AC128709.1-201ENST00000445908 600 ntTSL 3 BASIC15.52■□□□□ 0.08
CDH6P55285 AL513217.1-202ENST00000458139 600 ntTSL 3 BASIC15.52■□□□□ 0.08
CDH6P55285 AC106760.1-201ENST00000508690 800 ntBASIC15.52■□□□□ 0.08
CDH6P55285 HIRIP3-204ENST00000564026 988 ntTSL 2 BASIC15.52■□□□□ 0.08
CDH6P55285 TRAPPC6A-204ENST00000588062 695 ntTSL 2 BASIC15.52■□□□□ 0.08
CDH6P55285 AC005253.2-201ENST00000593791 432 ntTSL 3 BASIC15.52■□□□□ 0.08
CDH6P55285 TEAD3-202ENST00000402886 2729 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
CDH6P55285 SFMBT1-201ENST00000394752 4548 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
CDH6P55285 SLC13A5-203ENST00000433363 3435 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
CDH6P55285 PES1-201ENST00000335214 1988 ntAPPRIS ALT1 TSL 1 (best) BASIC15.52■□□□□ 0.07
CDH6P55285 PDPK1-201ENST00000268673 4728 ntTSL 1 (best) BASIC15.52■□□□□ 0.07
CDH6P55285 SGCZ-201ENST00000382080 2234 ntAPPRIS P1 TSL 5 BASIC15.52■□□□□ 0.07
Retrieved 100 of 98,524 protein–RNA pairs in 36.8 ms