Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 EGOT-201ENST00000414938 1464 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
COL5A1P20908 GPKOW-201ENST00000156109 1742 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
COL5A1P20908 TTLL11-201ENST00000321582 3250 ntAPPRIS P1 TSL 5 BASIC13.93□□□□□ -0.18
COL5A1P20908 PAK4-205ENST00000593690 3025 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
COL5A1P20908 TMSB15A-201ENST00000289373 685 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
COL5A1P20908 OBSCN-AS1-201ENST00000295012 889 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
COL5A1P20908 GDPGP1-201ENST00000329600 1193 ntAPPRIS P1 BASIC13.93□□□□□ -0.18
COL5A1P20908 S100A3-202ENST00000368713 856 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
COL5A1P20908 RGS5-216ENST00000449680 788 ntTSL 3 BASIC13.93□□□□□ -0.18
COL5A1P20908 AL392046.1-202ENST00000457255 521 ntTSL 5 BASIC13.93□□□□□ -0.18
COL5A1P20908 AC024293.1-201ENST00000467930 498 ntBASIC13.93□□□□□ -0.18
COL5A1P20908 RPL18AP8-201ENST00000486071 528 ntBASIC13.93□□□□□ -0.18
COL5A1P20908 FRMD4A-208ENST00000493380 1149 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
COL5A1P20908 LINC00431-202ENST00000636375 159 ntBASIC13.93□□□□□ -0.18
COL5A1P20908 AC114296.1-204ENST00000637197 1173 ntAPPRIS P5 TSL 5 BASIC13.93□□□□□ -0.18
COL5A1P20908 PDYN-AS1-201ENST00000446562 1802 ntTSL 2 BASIC13.93□□□□□ -0.18
COL5A1P20908 HSP90B1-201ENST00000299767 2858 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
COL5A1P20908 TLE4-206ENST00000376552 3695 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
COL5A1P20908 LETMD1-201ENST00000262055 2112 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
COL5A1P20908 LETMD1-203ENST00000418425 2123 ntTSL 2 BASIC13.93□□□□□ -0.18
COL5A1P20908 TRIM46-203ENST00000368383 2666 ntTSL 5 BASIC13.93□□□□□ -0.18
COL5A1P20908 P2RX5-207ENST00000551178 1863 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
COL5A1P20908 CPAMD8-202ENST00000388925 5355 ntTSL 5 BASIC13.93□□□□□ -0.18
COL5A1P20908 L1CAM-205ENST00000370060 5113 ntAPPRIS P4 TSL 5 BASIC13.93□□□□□ -0.18
COL5A1P20908 MYEF2-201ENST00000267836 2958 ntAPPRIS ALT2 TSL 1 (best) BASIC13.93□□□□□ -0.18
COL5A1P20908 DBN1-202ENST00000309007 2995 ntAPPRIS ALT2 TSL 1 (best) BASIC13.93□□□□□ -0.18
COL5A1P20908 MAGED2-201ENST00000218439 1958 ntAPPRIS P2 TSL 5 BASIC13.93□□□□□ -0.18
COL5A1P20908 ZNF174-201ENST00000268655 2260 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
COL5A1P20908 EID1-201ENST00000530028 2298 ntAPPRIS P1 BASIC13.93□□□□□ -0.18
COL5A1P20908 TSSC2-204ENST00000529482 2337 ntTSL 2 BASIC13.93□□□□□ -0.18
COL5A1P20908 PACSIN2-201ENST00000263246 3249 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
COL5A1P20908 UBL4B-201ENST00000334179 1478 ntAPPRIS P1 BASIC13.93□□□□□ -0.18
COL5A1P20908 CCDC43-203ENST00000588210 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC13.93□□□□□ -0.18
COL5A1P20908 TXNDC2-206ENST00000611534 2066 ntAPPRIS ALT2 TSL 5 BASIC13.93□□□□□ -0.18
COL5A1P20908 VCAN-211ENST00000513984 1825 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
COL5A1P20908 BSDC1-205ENST00000446293 1505 ntTSL 2 BASIC13.93□□□□□ -0.18
COL5A1P20908 AC138761.4-201ENST00000578881 1514 ntTSL 3 BASIC13.93□□□□□ -0.18
COL5A1P20908 EMILIN2-201ENST00000254528 5910 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
COL5A1P20908 BCAT2-201ENST00000316273 1552 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
COL5A1P20908 MBD3L3-201ENST00000333843 775 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
COL5A1P20908 ACYP2-204ENST00000422521 1115 ntTSL 5 BASIC13.92□□□□□ -0.18
COL5A1P20908 AL365436.2-201ENST00000434112 526 ntTSL 4 BASIC13.92□□□□□ -0.18
COL5A1P20908 C17orf58-202ENST00000449250 1082 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
COL5A1P20908 AC018638.5-201ENST00000450885 754 ntBASIC13.92□□□□□ -0.18
COL5A1P20908 AREG-202ENST00000502307 956 ntTSL 5 BASIC13.92□□□□□ -0.18
COL5A1P20908 AC084752.1-201ENST00000509766 622 ntBASIC13.92□□□□□ -0.18
COL5A1P20908 CLNS1A-211ENST00000532069 898 ntTSL 3 BASIC13.92□□□□□ -0.18
COL5A1P20908 FAM60A-207ENST00000542983 738 ntTSL 4 BASIC13.92□□□□□ -0.18
COL5A1P20908 AC140658.4-201ENST00000561990 352 ntBASIC13.92□□□□□ -0.18
COL5A1P20908 ZNF530-203ENST00000597864 634 ntTSL 2 BASIC13.92□□□□□ -0.18
COL5A1P20908 TREX1-206ENST00000629913 945 ntAPPRIS P1 BASIC13.92□□□□□ -0.18
COL5A1P20908 GLUD1P2-203ENST00000631118 486 ntTSL 3 BASIC13.92□□□□□ -0.18
COL5A1P20908 SH3KBP1-201ENST00000379697 1944 ntTSL 5 BASIC13.92□□□□□ -0.18
COL5A1P20908 PLCB2-202ENST00000456256 4242 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
COL5A1P20908 KANSL1-202ENST00000432791 5343 ntAPPRIS P3 TSL 1 (best) BASIC13.92□□□□□ -0.18
COL5A1P20908 KHK-201ENST00000260598 2397 ntAPPRIS P5 TSL 2 BASIC13.92□□□□□ -0.18
COL5A1P20908 HOXB4-201ENST00000332503 3757 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
COL5A1P20908 FDFT1-223ENST00000615631 2462 ntAPPRIS P1 TSL 5 BASIC13.92□□□□□ -0.18
COL5A1P20908 TMEM176B-204ENST00000447204 1430 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
COL5A1P20908 Z84468.1-201ENST00000626321 1408 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
COL5A1P20908 ASB10-201ENST00000275838 1820 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
COL5A1P20908 OPRM1-201ENST00000229768 1465 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
COL5A1P20908 OPRM1-207ENST00000428397 1481 ntAPPRIS P3 TSL 1 (best) BASIC13.92□□□□□ -0.18
COL5A1P20908 MAGED4B-207ENST00000485287 2618 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
COL5A1P20908 MAP3K3-202ENST00000361733 3529 ntAPPRIS P3 TSL 1 (best) BASIC13.92□□□□□ -0.18
COL5A1P20908 DDX42-208ENST00000578681 4337 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
COL5A1P20908 ARPC1A-201ENST00000262942 1565 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
COL5A1P20908 ZNF586-202ENST00000396150 1977 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
COL5A1P20908 DAGLB-204ENST00000436575 2385 ntTSL 2 BASIC13.92□□□□□ -0.18
COL5A1P20908 LINC02395-201ENST00000546821 3157 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
COL5A1P20908 MEOX1-202ENST00000329168 2129 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
COL5A1P20908 FAM3B-201ENST00000357985 1088 ntAPPRIS P3 TSL 1 (best) BASIC13.92□□□□□ -0.18
COL5A1P20908 GSTT2B-202ENST00000404172 819 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
COL5A1P20908 AC018814.1-201ENST00000418972 357 ntTSL 3 BASIC13.92□□□□□ -0.18
COL5A1P20908 SUMF2-210ENST00000437307 947 ntTSL 2 BASIC13.92□□□□□ -0.18
COL5A1P20908 AC073094.1-201ENST00000453798 433 ntTSL 2 BASIC13.92□□□□□ -0.18
COL5A1P20908 RN7SL396P-201ENST00000471086 295 ntBASIC13.92□□□□□ -0.18
COL5A1P20908 RAMP3-203ENST00000496212 543 ntAPPRIS ALT2 TSL 4 BASIC13.92□□□□□ -0.18
COL5A1P20908 TMBIM4-208ENST00000542724 770 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
COL5A1P20908 PIGT-208ENST00000545755 1158 ntTSL 5 BASIC13.92□□□□□ -0.18
COL5A1P20908 TMEM98-205ENST00000578289 806 ntTSL 3 BASIC13.92□□□□□ -0.18
COL5A1P20908 AP003392.6-201ENST00000607709 325 ntBASIC13.92□□□□□ -0.18
COL5A1P20908 CPEB1-211ENST00000615198 2112 ntAPPRIS P2 TSL 1 (best) BASIC13.92□□□□□ -0.18
COL5A1P20908 SOBP-201ENST00000317357 5245 ntAPPRIS P1 TSL 5 BASIC13.92□□□□□ -0.18
COL5A1P20908 FBXO16-202ENST00000380254 1343 ntAPPRIS P3 TSL 1 (best) BASIC13.92□□□□□ -0.18
COL5A1P20908 LRIF1-202ENST00000485275 1796 ntAPPRIS ALT2 TSL 2 BASIC13.92□□□□□ -0.18
COL5A1P20908 PIANP-202ENST00000534837 2695 ntAPPRIS ALT2 TSL 1 (best) BASIC13.92□□□□□ -0.18
COL5A1P20908 GNAO1-205ENST00000563661 1351 ntTSL 2 BASIC13.92□□□□□ -0.18
COL5A1P20908 CDK5RAP3-201ENST00000338399 1866 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
COL5A1P20908 TFAP2C-201ENST00000201031 2866 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
COL5A1P20908 PDCD2-208ENST00000541970 3378 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
COL5A1P20908 TNFSF13-202ENST00000349228 2036 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
COL5A1P20908 CLDN22-201ENST00000323319 2581 ntAPPRIS P1 BASIC13.91□□□□□ -0.18
COL5A1P20908 ADO-201ENST00000373783 3627 ntAPPRIS P1 BASIC13.91□□□□□ -0.18
COL5A1P20908 CBX8-201ENST00000269385 3791 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
COL5A1P20908 SLC26A11-203ENST00000546047 2807 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
COL5A1P20908 IL3RA-201ENST00000331035 1706 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
COL5A1P20908 ZCCHC17-202ENST00000373714 1730 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
COL5A1P20908 RELT-201ENST00000064780 3535 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
COL5A1P20908 SCNN1D-205ENST00000379116 3044 ntAPPRIS P2 TSL 5 BASIC13.91□□□□□ -0.18
Retrieved 100 of 98,524 protein–RNA pairs in 54.7 ms