Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 AC240504.1-201ENST00000395709 845 ntBASIC15.19■□□□□ 0.02
COL9A1P20849 PPM1N-201ENST00000396735 895 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
COL9A1P20849 GGTLC4P-201ENST00000402176 664 ntBASIC15.19■□□□□ 0.02
COL9A1P20849 RN7SKP175-201ENST00000408472 289 ntBASIC15.19■□□□□ 0.02
COL9A1P20849 AHCYP3-201ENST00000420053 1279 ntBASIC15.19■□□□□ 0.02
COL9A1P20849 AL807761.2-201ENST00000422849 729 ntBASIC15.19■□□□□ 0.02
COL9A1P20849 AL929302.1-201ENST00000426556 871 ntBASIC15.19■□□□□ 0.02
COL9A1P20849 LINC01370-202ENST00000445606 731 ntTSL 5 BASIC15.19■□□□□ 0.02
COL9A1P20849 AL355537.2-201ENST00000453367 375 ntTSL 2 BASIC15.19■□□□□ 0.02
COL9A1P20849 PPM1N-208ENST00000456399 618 ntTSL 3 BASIC15.19■□□□□ 0.02
COL9A1P20849 LINC00824-204ENST00000520766 597 ntTSL 5 BASIC15.19■□□□□ 0.02
COL9A1P20849 AC100818.1-201ENST00000524167 563 ntTSL 4 BASIC15.19■□□□□ 0.02
COL9A1P20849 C11orf58-207ENST00000525684 575 ntTSL 2 BASIC15.19■□□□□ 0.02
COL9A1P20849 C11orf58-209ENST00000528634 776 ntTSL 5 BASIC15.19■□□□□ 0.02
COL9A1P20849 AC007728.1-202ENST00000564510 787 ntTSL 3 BASIC15.19■□□□□ 0.02
COL9A1P20849 LINC01477-201ENST00000566101 1226 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
COL9A1P20849 DERL2-206ENST00000572834 589 ntTSL 3 BASIC15.19■□□□□ 0.02
COL9A1P20849 LINC00621-201ENST00000577004 1177 ntTSL 4 BASIC15.19■□□□□ 0.02
COL9A1P20849 AC004637.1-201ENST00000586675 482 ntTSL 3 BASIC15.19■□□□□ 0.02
COL9A1P20849 SMIM24-203ENST00000587847 820 ntAPPRIS ALT2 TSL 1 (best) BASIC15.19■□□□□ 0.02
COL9A1P20849 PCP2-202ENST00000598935 457 ntAPPRIS ALT2 TSL 3 BASIC15.19■□□□□ 0.02
COL9A1P20849 NAMA-206ENST00000605377 509 ntTSL 5 BASIC15.19■□□□□ 0.02
COL9A1P20849 ANKRD20A21P-201ENST00000611282 517 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
COL9A1P20849 Metazoa_SRP.210-201ENST00000637921 244 ntBASIC15.19■□□□□ 0.02
COL9A1P20849 CTCF-201ENST00000264010 3939 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
COL9A1P20849 GFAP-225ENST00000638281 2099 ntTSL 5 BASIC15.19■□□□□ 0.02
COL9A1P20849 POR-218ENST00000461988 2522 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
COL9A1P20849 NFYC-205ENST00000372654 1455 ntAPPRIS P3 TSL 1 (best) BASIC15.19■□□□□ 0.02
COL9A1P20849 ZNF628-201ENST00000391718 3177 ntAPPRIS ALT2 BASIC15.19■□□□□ 0.02
COL9A1P20849 ACSL4-201ENST00000340800 5333 ntAPPRIS P4 TSL 5 BASIC15.19■□□□□ 0.02
COL9A1P20849 LZTS3-203ENST00000360342 4055 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
COL9A1P20849 GABBR1-205ENST00000377034 4527 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
COL9A1P20849 SCNN1A-221ENST00000543768 2361 ntAPPRIS ALT2 TSL 2 BASIC15.19■□□□□ 0.02
COL9A1P20849 CRISPLD2-203ENST00000564567 1651 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
COL9A1P20849 PITPNM1-201ENST00000356404 4225 ntAPPRIS P3 TSL 1 (best) BASIC15.19■□□□□ 0.02
COL9A1P20849 FRMPD2B-201ENST00000431305 1347 ntBASIC15.18■□□□□ 0.02
COL9A1P20849 UNC5D-203ENST00000416672 3532 ntAPPRIS ALT2 TSL 5 BASIC15.18■□□□□ 0.02
COL9A1P20849 SIPA1-201ENST00000394224 3628 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
COL9A1P20849 SLC2A13-202ENST00000380858 3082 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
COL9A1P20849 NOTCH3-201ENST00000263388 8666 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
COL9A1P20849 EIF4H-202ENST00000353999 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC15.18■□□□□ 0.02
COL9A1P20849 TNKS-211ENST00000520408 1964 ntTSL 2 BASIC15.18■□□□□ 0.02
COL9A1P20849 AP000593.2-201ENST00000542775 1433 ntBASIC15.18■□□□□ 0.02
COL9A1P20849 NKX3-1-201ENST00000380871 3271 ntAPPRIS P3 TSL 1 (best) BASIC15.18■□□□□ 0.02
COL9A1P20849 UGCG-201ENST00000374279 4007 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
COL9A1P20849 AC133785.1-201ENST00000429282 2824 ntTSL 2 BASIC15.18■□□□□ 0.02
COL9A1P20849 HLF-201ENST00000226067 5547 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
COL9A1P20849 KIR2DS4-201ENST00000339924 1608 ntAPPRIS P5 TSL 1 (best) BASIC15.18■□□□□ 0.02
COL9A1P20849 EXOC7-213ENST00000467929 2260 ntTSL 2 BASIC15.18■□□□□ 0.02
COL9A1P20849 SMARCD1-202ENST00000394963 3658 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
COL9A1P20849 PLEKHB1-202ENST00000354190 2380 ntAPPRIS P4 TSL 1 (best) BASIC15.18■□□□□ 0.02
COL9A1P20849 CBFB-201ENST00000290858 3136 ntAPPRIS P3 TSL 1 (best) BASIC15.18■□□□□ 0.02
COL9A1P20849 HSF5-201ENST00000323777 4094 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
COL9A1P20849 TACC1-202ENST00000317827 7802 ntAPPRIS P3 TSL 1 (best) BASIC15.18■□□□□ 0.02
COL9A1P20849 DKFZP434H168-201ENST00000567381 1905 ntBASIC15.18■□□□□ 0.02
COL9A1P20849 C9orf24-201ENST00000297623 1151 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
COL9A1P20849 FZR1-201ENST00000313639 1215 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
COL9A1P20849 C9orf24-205ENST00000379133 712 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
COL9A1P20849 AC098657.1-201ENST00000416270 1135 ntBASIC15.18■□□□□ 0.02
COL9A1P20849 ZNF736P1Y-201ENST00000440402 1276 ntBASIC15.18■□□□□ 0.02
COL9A1P20849 GYG2-AS1-201ENST00000445107 515 ntTSL 5 BASIC15.18■□□□□ 0.02
COL9A1P20849 VENTXP4-201ENST00000449029 958 ntBASIC15.18■□□□□ 0.02
COL9A1P20849 GH2-203ENST00000449787 753 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
COL9A1P20849 FOXP4-AS1-205ENST00000454812 575 ntTSL 2 BASIC15.18■□□□□ 0.02
COL9A1P20849 CCNC-217ENST00000523985 958 ntTSL 2 BASIC15.18■□□□□ 0.02
COL9A1P20849 AC068205.1-201ENST00000526615 689 ntTSL 3 BASIC15.18■□□□□ 0.02
COL9A1P20849 ZNF720-211ENST00000539915 837 ntTSL 3 BASIC15.18■□□□□ 0.02
COL9A1P20849 AC009163.5-202ENST00000571737 466 ntTSL 3 BASIC15.18■□□□□ 0.02
COL9A1P20849 AC012593.1-214ENST00000586952 767 ntTSL 5 BASIC15.18■□□□□ 0.02
COL9A1P20849 AC008805.1-201ENST00000590892 364 ntBASIC15.18■□□□□ 0.02
COL9A1P20849 MIR6746-201ENST00000620971 63 ntBASIC15.18■□□□□ 0.02
COL9A1P20849 NF1P11-201ENST00000621292 1282 ntBASIC15.18■□□□□ 0.02
COL9A1P20849 AC129778.1-201ENST00000623957 920 ntTSL 5 BASIC15.18■□□□□ 0.02
COL9A1P20849 OAZ3-207ENST00000627780 850 ntTSL 5 BASIC15.18■□□□□ 0.02
COL9A1P20849 OAZ3-209ENST00000635322 745 ntTSL 5 BASIC15.18■□□□□ 0.02
COL9A1P20849 AC079325.2-202ENST00000641031 462 ntAPPRIS ALT2 BASIC15.18■□□□□ 0.02
COL9A1P20849 AC079325.2-201ENST00000641710 606 ntAPPRIS P5 BASIC15.18■□□□□ 0.02
COL9A1P20849 SERPINB9P1-202ENST00000545177 1375 ntTSL 3 BASIC15.18■□□□□ 0.02
COL9A1P20849 KC6-207ENST00000600644 2311 ntTSL 3 BASIC15.18■□□□□ 0.02
COL9A1P20849 KLC1-206ENST00000389744 3250 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
COL9A1P20849 STOX1-201ENST00000298596 3377 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
COL9A1P20849 CROCCP3-201ENST00000263511 5368 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
COL9A1P20849 FOXH1-201ENST00000377317 2503 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
COL9A1P20849 UBXN11-202ENST00000357089 1555 ntAPPRIS ALT2 TSL 5 BASIC15.18■□□□□ 0.02
COL9A1P20849 THEMIS2-203ENST00000373925 1650 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
COL9A1P20849 GOLGA8S-201ENST00000562295 1878 ntAPPRIS P1 TSL 5 BASIC15.18■□□□□ 0.02
COL9A1P20849 AGTPBP1-201ENST00000337006 4473 ntTSL 5 BASIC15.18■□□□□ 0.02
COL9A1P20849 ELF3-201ENST00000359651 4994 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
COL9A1P20849 RBPJL-201ENST00000343694 2489 ntAPPRIS P3 TSL 1 (best) BASIC15.18■□□□□ 0.02
COL9A1P20849 ITGA8-201ENST00000378076 6755 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
COL9A1P20849 MAPK8IP1-202ENST00000395629 3180 ntTSL 5 BASIC15.18■□□□□ 0.02
COL9A1P20849 RAB11FIP5-205ENST00000486777 6120 ntTSL 5 BASIC15.18■□□□□ 0.02
COL9A1P20849 SPTBN4-204ENST00000392025 8671 ntAPPRIS ALT1 TSL 5 BASIC15.18■□□□□ 0.02
COL9A1P20849 CTBP2P8-201ENST00000422584 1330 ntBASIC15.17■□□□□ 0.02
COL9A1P20849 FMR1-215ENST00000616382 1648 ntTSL 5 BASIC15.17■□□□□ 0.02
COL9A1P20849 NSUN5P1-206ENST00000457988 1836 ntTSL 2 BASIC15.17■□□□□ 0.02
COL9A1P20849 MUC20-201ENST00000320736 1916 ntAPPRIS ALT2 TSL 5 BASIC15.17■□□□□ 0.02
COL9A1P20849 C10orf10-201ENST00000298295 2120 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
COL9A1P20849 KIAA1586-201ENST00000370733 2933 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
COL9A1P20849 SOWAHB-201ENST00000334306 3220 ntAPPRIS P1 BASIC15.17■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 65.3 ms