Protein–RNA interactions for Protein: O76039

CDKL5, Cyclin-dependent kinase-like 5, humanhuman

Predictions only

Length 1,030 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDKL5O76039 TCF20-203ENST00000404876 1058 ntTSL 3 BASIC17.34■□□□□ 0.37
CDKL5O76039 MYH6-202ENST00000405093 5941 ntAPPRIS P1 TSL 5 BASIC17.34■□□□□ 0.37
CDKL5O76039 COX5BP8-201ENST00000416911 349 ntBASIC17.34■□□□□ 0.37
CDKL5O76039 RPSAP31-202ENST00000445165 716 ntTSL 2 BASIC17.34■□□□□ 0.37
CDKL5O76039 XPNPEP1-218ENST00000502935 2539 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
CDKL5O76039 RNA5SP486-201ENST00000515961 83 ntBASIC17.34■□□□□ 0.37
CDKL5O76039 ZNF576-203ENST00000525771 2327 ntAPPRIS P1 TSL 2 BASIC17.34■□□□□ 0.37
CDKL5O76039 LINC02449-203ENST00000536034 451 ntTSL 3 BASIC17.34■□□□□ 0.37
CDKL5O76039 LINC00937-207ENST00000544461 3033 ntTSL 2 BASIC17.34■□□□□ 0.37
CDKL5O76039 AC125603.2-201ENST00000546835 876 ntTSL 3 BASIC17.34■□□□□ 0.37
CDKL5O76039 AC132938.2-201ENST00000579188 680 ntBASIC17.34■□□□□ 0.37
CDKL5O76039 DKKL1-202ENST00000594268 524 ntAPPRIS ALT2 TSL 2 BASIC17.34■□□□□ 0.37
CDKL5O76039 SCGB1C2-201ENST00000595228 478 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
CDKL5O76039 GNRHR2-204ENST00000604273 1078 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
CDKL5O76039 Metazoa_SRP.80-201ENST00000619894 320 ntBASIC17.34■□□□□ 0.37
CDKL5O76039 AL591163.1-201ENST00000641757 987 ntBASIC17.34■□□□□ 0.37
CDKL5O76039 ZNF831-201ENST00000371030 9401 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
CDKL5O76039 COL5A1-208ENST00000618395 8437 ntAPPRIS ALT2 TSL 5 BASIC17.34■□□□□ 0.37
CDKL5O76039 TMPRSS6-202ENST00000381792 3260 ntAPPRIS ALT2 TSL 5 BASIC17.34■□□□□ 0.37
CDKL5O76039 AC026748.1-201ENST00000624349 3251 ntBASIC17.34■□□□□ 0.37
CDKL5O76039 TRAPPC8-210ENST00000582513 3205 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
CDKL5O76039 TTC39A-208ENST00000413473 2718 ntAPPRIS P4 TSL 1 (best) BASIC17.34■□□□□ 0.37
CDKL5O76039 MAOB-201ENST00000378069 2566 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
CDKL5O76039 PLEKHN1-202ENST00000379409 2455 ntAPPRIS ALT2 TSL 2 BASIC17.33■□□□□ 0.37
CDKL5O76039 PDE1B-207ENST00000550620 2150 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
CDKL5O76039 SPATA7-203ENST00000393545 2123 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.37
CDKL5O76039 AC007603.1-201ENST00000563124 2085 ntTSL 2 BASIC17.33■□□□□ 0.37
CDKL5O76039 SRSF8-201ENST00000587424 4028 ntAPPRIS P1 BASIC17.33■□□□□ 0.37
CDKL5O76039 ABCG4-205ENST00000619701 3852 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
CDKL5O76039 TMEM51-204ENST00000428417 1942 ntAPPRIS P1 TSL 3 BASIC17.33■□□□□ 0.37
CDKL5O76039 LINC00665-203ENST00000438368 1863 ntTSL 5 BASIC17.33■□□□□ 0.37
CDKL5O76039 SCAP-206ENST00000428413 3749 ntTSL 5 BASIC17.33■□□□□ 0.37
CDKL5O76039 AL121757.1-201ENST00000430097 1836 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
CDKL5O76039 SUGP2-202ENST00000337018 3640 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.37
CDKL5O76039 HNF4G-201ENST00000354370 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.37
CDKL5O76039 RRP1B-201ENST00000340648 5090 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
CDKL5O76039 CCDC50-201ENST00000392455 8429 ntAPPRIS ALT1 TSL 1 (best) BASIC17.33■□□□□ 0.37
CDKL5O76039 FKBP6-201ENST00000252037 1500 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.37
CDKL5O76039 CAMK2A-203ENST00000398376 1493 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
CDKL5O76039 DMAC2-204ENST00000438807 1454 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
CDKL5O76039 ECHDC1-220ENST00000528402 1449 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
CDKL5O76039 AP000593.2-201ENST00000542775 1433 ntBASIC17.33■□□□□ 0.36
CDKL5O76039 NHEG1-202ENST00000432330 1357 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
CDKL5O76039 DBNDD2-201ENST00000357275 1036 ntAPPRIS P1 TSL 5 BASIC17.33■□□□□ 0.36
CDKL5O76039 AMPD3-203ENST00000396554 3806 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
CDKL5O76039 C17orf51-202ENST00000412778 877 ntAPPRIS ALT2 TSL 3 BASIC17.33■□□□□ 0.36
CDKL5O76039 TMEM170A-203ENST00000566980 547 ntTSL 5 BASIC17.33■□□□□ 0.36
CDKL5O76039 AC012645.3-203ENST00000567153 520 ntTSL 2 BASIC17.33■□□□□ 0.36
CDKL5O76039 AC004637.1-201ENST00000586675 482 ntTSL 3 BASIC17.33■□□□□ 0.36
CDKL5O76039 ZNF790-AS1-204ENST00000589556 650 ntTSL 2 BASIC17.33■□□□□ 0.36
CDKL5O76039 CECR7-204ENST00000609932 568 ntTSL 2 BASIC17.33■□□□□ 0.36
CDKL5O76039 PPP1CB-203ENST00000395366 4893 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
CDKL5O76039 TMEM139-201ENST00000359333 2383 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
CDKL5O76039 AC097359.2-201ENST00000604992 2389 ntBASIC17.33■□□□□ 0.36
CDKL5O76039 CYB561-203ENST00000392976 3151 ntAPPRIS P1 TSL 3 BASIC17.33■□□□□ 0.36
CDKL5O76039 FCHSD2-204ENST00000409418 3154 ntAPPRIS P1 TSL 2 BASIC17.33■□□□□ 0.36
CDKL5O76039 GCNT7-201ENST00000243913 2064 ntTSL 2 BASIC17.33■□□□□ 0.36
CDKL5O76039 PUS1-202ENST00000376649 4094 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.36
CDKL5O76039 RPA3-201ENST00000223129 2020 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
CDKL5O76039 AQP1-201ENST00000311813 2913 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
CDKL5O76039 ATL3-203ENST00000538786 1920 ntAPPRIS ALT2 TSL 2 BASIC17.33■□□□□ 0.36
CDKL5O76039 LARP4-219ENST00000614335 1949 ntTSL 5 BASIC17.33■□□□□ 0.36
CDKL5O76039 SLC22A15-202ENST00000369503 4720 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
CDKL5O76039 PATZ1-202ENST00000266269 3781 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
CDKL5O76039 RNF122-201ENST00000256257 1868 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
CDKL5O76039 TSEN2-205ENST00000444864 2697 ntTSL 2 BASIC17.33■□□□□ 0.36
CDKL5O76039 RAB29-201ENST00000235932 1723 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
CDKL5O76039 GPRASP1-205ENST00000537097 5980 ntAPPRIS P1 TSL 2 BASIC17.33■□□□□ 0.36
CDKL5O76039 TCAF1-205ENST00000479870 5733 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
CDKL5O76039 ANKLE2-210ENST00000542657 2446 ntTSL 2 BASIC17.32■□□□□ 0.36
CDKL5O76039 ABR-205ENST00000544583 5595 ntTSL 2 BASIC17.32■□□□□ 0.36
CDKL5O76039 TMCO5B-204ENST00000529696 1568 ntTSL 2 BASIC17.32■□□□□ 0.36
CDKL5O76039 HCK-209ENST00000538448 2215 ntAPPRIS ALT2 TSL 2 BASIC17.32■□□□□ 0.36
CDKL5O76039 HEATR3-201ENST00000299192 3560 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CDKL5O76039 CHI3L2-212ENST00000524472 1435 ntTSL 2 BASIC17.32■□□□□ 0.36
CDKL5O76039 RASGRF2-206ENST00000638442 2842 ntTSL 5 BASIC17.32■□□□□ 0.36
CDKL5O76039 MSH5-203ENST00000375750 2775 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
CDKL5O76039 TUBA8-202ENST00000330423 2018 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CDKL5O76039 HTR4-209ENST00000521530 1323 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
CDKL5O76039 ZBED1-202ENST00000381222 4507 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CDKL5O76039 C9orf24-201ENST00000297623 1151 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CDKL5O76039 EDF1-203ENST00000371649 790 ntTSL 2 BASIC17.32■□□□□ 0.36
CDKL5O76039 TAF8-202ENST00000372978 794 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
CDKL5O76039 C9orf24-205ENST00000379133 712 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
CDKL5O76039 BUD31-202ENST00000403633 1139 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CDKL5O76039 NME2P1-201ENST00000426182 414 ntBASIC17.32■□□□□ 0.36
CDKL5O76039 KRT43P-201ENST00000434019 910 ntBASIC17.32■□□□□ 0.36
CDKL5O76039 AC124944.1-201ENST00000448113 625 ntTSL 2 BASIC17.32■□□□□ 0.36
CDKL5O76039 AL353747.3-201ENST00000454185 579 ntTSL 3 BASIC17.32■□□□□ 0.36
CDKL5O76039 AC095060.1-201ENST00000502455 549 ntTSL 4 BASIC17.32■□□□□ 0.36
CDKL5O76039 AL118558.1-202ENST00000557242 451 ntTSL 3 BASIC17.32■□□□□ 0.36
CDKL5O76039 RPL28-206ENST00000558752 671 ntTSL 3 BASIC17.32■□□□□ 0.36
CDKL5O76039 APRT-204ENST00000563655 709 ntTSL 5 BASIC17.32■□□□□ 0.36
CDKL5O76039 SPECC1-223ENST00000584527 940 ntTSL 3 BASIC17.32■□□□□ 0.36
CDKL5O76039 ECM1P1-201ENST00000604092 1279 ntBASIC17.32■□□□□ 0.36
CDKL5O76039 SLC9A3-AS1-206ENST00000607005 435 ntTSL 3 BASIC17.32■□□□□ 0.36
CDKL5O76039 IGHV3-72-202ENST00000621503 303 ntBASIC17.32■□□□□ 0.36
CDKL5O76039 FAM189A2-201ENST00000257515 2423 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CDKL5O76039 ZFYVE28-201ENST00000290974 4131 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
CDKL5O76039 ARC-201ENST00000356613 2948 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 81.1 ms