Protein–RNA interactions for Protein: Q9H9J4

USP42, Ubiquitin carboxyl-terminal hydrolase 42, humanhuman

Known RBP Predictions only

Length 1,324 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP42Q9H9J4 PTCHD3P2-201ENST00000424937 1205 ntBASIC29.35■■■□□ 2.29
USP42Q9H9J4 AC116614.1-201ENST00000456949 539 ntTSL 2 BASIC29.35■■■□□ 2.29
USP42Q9H9J4 WDR86-AS1-204ENST00000489632 751 ntTSL 3 BASIC29.35■■■□□ 2.29
USP42Q9H9J4 AC018413.1-201ENST00000581996 1200 ntTSL 2 BASIC29.35■■■□□ 2.29
USP42Q9H9J4 SLC35A3-216ENST00000639221 1032 ntTSL 5 BASIC29.35■■■□□ 2.29
USP42Q9H9J4 B3GALT4-204ENST00000451237 1694 ntAPPRIS P1 BASIC29.34■■■□□ 2.29
USP42Q9H9J4 PORCN-203ENST00000359882 1877 ntAPPRIS ALT1 TSL 5 BASIC29.34■■■□□ 2.29
USP42Q9H9J4 PTPA-202ENST00000347048 1989 ntTSL 1 (best) BASIC29.34■■■□□ 2.29
USP42Q9H9J4 TMIE-201ENST00000326431 1824 ntAPPRIS P1 TSL 1 (best) BASIC29.34■■■□□ 2.29
USP42Q9H9J4 PFKFB4-202ENST00000383734 1491 ntTSL 1 (best) BASIC29.34■■■□□ 2.29
USP42Q9H9J4 ANKS3-204ENST00000585773 1946 ntTSL 2 BASIC29.34■■■□□ 2.29
USP42Q9H9J4 SPEF1-201ENST00000379756 1580 ntAPPRIS P1 TSL 1 (best) BASIC29.34■■■□□ 2.29
USP42Q9H9J4 AL122058.1-201ENST00000412321 1166 ntTSL 1 (best) BASIC29.33■■■□□ 2.29
USP42Q9H9J4 REST-206ENST00000612429 1376 ntTSL 5 BASIC29.33■■■□□ 2.29
USP42Q9H9J4 REST-207ENST00000616975 1370 ntTSL 5 BASIC29.33■■■□□ 2.29
USP42Q9H9J4 HABP4-202ENST00000375251 2304 ntTSL 1 (best) BASIC29.33■■■□□ 2.29
USP42Q9H9J4 ARL6IP4-210ENST00000453766 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC29.33■■■□□ 2.29
USP42Q9H9J4 ZKSCAN7-206ENST00000431636 1692 ntTSL 1 (best) BASIC29.33■■■□□ 2.29
USP42Q9H9J4 CHST13-201ENST00000319340 1789 ntAPPRIS P1 TSL 1 (best) BASIC29.33■■■□□ 2.29
USP42Q9H9J4 PPP1R14C-201ENST00000361131 2152 ntAPPRIS P1 TSL 1 (best) BASIC29.33■■■□□ 2.29
USP42Q9H9J4 AMZ2-219ENST00000612294 1498 ntAPPRIS P1 TSL 1 (best) BASIC29.32■■■□□ 2.28
USP42Q9H9J4 AC099791.2-201ENST00000605725 427 ntBASIC29.32■■■□□ 2.28
USP42Q9H9J4 AC011298.3-201ENST00000615796 283 ntBASIC29.32■■■□□ 2.28
USP42Q9H9J4 CCDC106-202ENST00000586790 2162 ntAPPRIS P1 TSL 1 (best) BASIC29.32■■■□□ 2.28
USP42Q9H9J4 NAA30-202ENST00000554703 795 ntTSL 1 (best) BASIC29.31■■■□□ 2.28
USP42Q9H9J4 TMEM104-205ENST00000582773 1740 ntTSL 2 BASIC29.31■■■□□ 2.28
USP42Q9H9J4 NKAIN3-202ENST00000523211 1988 ntAPPRIS P1 TSL 2 BASIC29.31■■■□□ 2.28
USP42Q9H9J4 HADH-203ENST00000505878 1719 ntTSL 1 (best) BASIC29.3■■■□□ 2.28
USP42Q9H9J4 LRRC75A-203ENST00000470794 1390 ntAPPRIS ALT2 TSL 1 (best) BASIC29.3■■■□□ 2.28
USP42Q9H9J4 ENKD1-206ENST00000602644 1353 ntTSL 5 BASIC29.3■■■□□ 2.28
USP42Q9H9J4 TAZ-205ENST00000475699 1862 ntTSL 1 (best) BASIC29.3■■■□□ 2.28
USP42Q9H9J4 GLI3-203ENST00000437480 451 ntTSL 2 BASIC29.3■■■□□ 2.28
USP42Q9H9J4 AP006621.3-202ENST00000530083 765 ntTSL 3 BASIC29.3■■■□□ 2.28
USP42Q9H9J4 AC131274.2-201ENST00000580697 1507 ntBASIC29.3■■■□□ 2.28
USP42Q9H9J4 SLC15A3-201ENST00000227880 2115 ntAPPRIS P1 TSL 1 (best) BASIC29.3■■■□□ 2.28
USP42Q9H9J4 OAS3-205ENST00000548514 1392 ntTSL 2 BASIC29.29■■■□□ 2.28
USP42Q9H9J4 KRT72-202ENST00000354310 1764 ntTSL 2 BASIC29.29■■■□□ 2.28
USP42Q9H9J4 AC104564.5-201ENST00000584986 278 ntTSL 3 BASIC29.29■■■□□ 2.28
USP42Q9H9J4 AL138724.1-201ENST00000606771 1088 ntBASIC29.29■■■□□ 2.28
USP42Q9H9J4 DNAH9-209ENST00000579828 1986 ntTSL 2 BASIC29.29■■■□□ 2.28
USP42Q9H9J4 RBMXL2-201ENST00000306904 1874 ntAPPRIS P1 BASIC29.29■■■□□ 2.28
USP42Q9H9J4 SNTA1-201ENST00000217381 2342 ntAPPRIS P1 TSL 1 (best) BASIC29.29■■■□□ 2.28
USP42Q9H9J4 PLPP2-202ENST00000327790 1397 ntTSL 5 BASIC29.28■■■□□ 2.28
USP42Q9H9J4 CAPZB-203ENST00000375142 1686 ntAPPRIS ALT1 TSL 5 BASIC29.28■■■□□ 2.28
USP42Q9H9J4 MATK-204ENST00000585778 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC29.28■■■□□ 2.28
USP42Q9H9J4 MEIS2-204ENST00000397620 2295 ntTSL 2 BASIC29.28■■■□□ 2.28
USP42Q9H9J4 C1orf35-201ENST00000272139 1427 ntAPPRIS P1 TSL 1 (best) BASIC29.28■■■□□ 2.28
USP42Q9H9J4 LKAAEAR1-201ENST00000302096 761 ntAPPRIS ALT2 TSL 2 BASIC29.28■■■□□ 2.28
USP42Q9H9J4 LKAAEAR1-202ENST00000308906 868 ntAPPRIS P2 TSL 1 (best) BASIC29.28■■■□□ 2.28
USP42Q9H9J4 ACSS1-203ENST00000432802 2438 ntTSL 2 BASIC29.28■■■□□ 2.28
USP42Q9H9J4 RPUSD1-201ENST00000007264 2050 ntAPPRIS P1 TSL 2 BASIC29.27■■■□□ 2.28
USP42Q9H9J4 KREMEN2-205ENST00000575769 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC29.27■■■□□ 2.28
USP42Q9H9J4 PLPP5-201ENST00000419686 794 ntTSL 2 BASIC29.27■■■□□ 2.28
USP42Q9H9J4 ORAI3-202ENST00000562699 628 ntTSL 2 BASIC29.27■■■□□ 2.28
USP42Q9H9J4 ACAP1-206ENST00000571471 320 ntTSL 2 BASIC29.27■■■□□ 2.28
USP42Q9H9J4 C14orf80-204ENST00000392522 1630 ntAPPRIS P4 TSL 5 BASIC29.27■■■□□ 2.28
USP42Q9H9J4 KAT8-206ENST00000543774 1846 ntAPPRIS P1 TSL 5 BASIC29.26■■■□□ 2.28
USP42Q9H9J4 GLTPD2-201ENST00000331264 1023 ntAPPRIS P1 TSL 1 (best) BASIC29.26■■■□□ 2.27
USP42Q9H9J4 AC068580.1-201ENST00000446489 252 ntTSL 3 BASIC29.26■■■□□ 2.27
USP42Q9H9J4 AC004707.1-201ENST00000511627 715 ntTSL 3 BASIC29.26■■■□□ 2.27
USP42Q9H9J4 SNX5-201ENST00000377759 2270 ntAPPRIS P1 TSL 1 (best) BASIC29.26■■■□□ 2.27
USP42Q9H9J4 MROH6-210ENST00000533679 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC29.25■■■□□ 2.27
USP42Q9H9J4 IRS3P-201ENST00000223076 1006 ntBASIC29.25■■■□□ 2.27
USP42Q9H9J4 APOE-201ENST00000252486 1208 ntAPPRIS P1 TSL 1 (best) BASIC29.25■■■□□ 2.27
USP42Q9H9J4 CNPY3-202ENST00000394142 954 ntTSL 5 BASIC29.25■■■□□ 2.27
USP42Q9H9J4 AC008764.7-201ENST00000593779 1081 ntBASIC29.25■■■□□ 2.27
USP42Q9H9J4 MYDGF-203ENST00000599630 713 ntTSL 2 BASIC29.25■■■□□ 2.27
USP42Q9H9J4 CBWD3-212ENST00000616550 721 ntTSL 2 BASIC29.25■■■□□ 2.27
USP42Q9H9J4 CBWD6-216ENST00000617933 721 ntTSL 3 BASIC29.25■■■□□ 2.27
USP42Q9H9J4 TNK2-201ENST00000333602 5270 ntAPPRIS P1 TSL 1 (best) BASIC29.25■■■□□ 2.27
USP42Q9H9J4 C20orf27-202ENST00000379772 1886 ntAPPRIS P1 TSL 1 (best) BASIC29.25■■■□□ 2.27
USP42Q9H9J4 PPIL6-203ENST00000440797 1693 ntTSL 1 (best) BASIC29.25■■■□□ 2.27
USP42Q9H9J4 TRIM54-201ENST00000296098 2027 ntTSL 1 (best) BASIC29.25■■■□□ 2.27
USP42Q9H9J4 RPP38-207ENST00000616640 1537 ntAPPRIS P1 TSL 2 BASIC29.24■■■□□ 2.27
USP42Q9H9J4 CTAG2-202ENST00000369585 748 ntAPPRIS P1 TSL 1 (best) BASIC29.24■■■□□ 2.27
USP42Q9H9J4 AC099791.1-201ENST00000416440 715 ntBASIC29.24■■■□□ 2.27
USP42Q9H9J4 CD63-202ENST00000420846 981 ntAPPRIS P1 TSL 5 BASIC29.24■■■□□ 2.27
USP42Q9H9J4 AC008105.3-201ENST00000586376 844 ntTSL 3 BASIC29.24■■■□□ 2.27
USP42Q9H9J4 ZNF503-AS2-202ENST00000466942 1430 ntTSL 2 BASIC29.24■■■□□ 2.27
USP42Q9H9J4 RRP9-201ENST00000232888 1578 ntAPPRIS P1 TSL 1 (best) BASIC29.24■■■□□ 2.27
USP42Q9H9J4 FOXA3-201ENST00000302177 1989 ntAPPRIS P1 TSL 1 (best) BASIC29.23■■■□□ 2.27
USP42Q9H9J4 ST6GALNAC6-204ENST00000373144 2406 ntAPPRIS ALT1 TSL 1 (best) BASIC29.23■■■□□ 2.27
USP42Q9H9J4 AC009102.2-201ENST00000606772 1639 ntBASIC29.23■■■□□ 2.27
USP42Q9H9J4 JTB-203ENST00000368589 1216 ntTSL 2 BASIC29.22■■■□□ 2.27
USP42Q9H9J4 STOX1-202ENST00000399162 935 ntTSL 1 (best) BASIC29.22■■■□□ 2.27
USP42Q9H9J4 STOX1-203ENST00000399165 1135 ntTSL 1 (best) BASIC29.22■■■□□ 2.27
USP42Q9H9J4 PRELID2-204ENST00000505416 738 ntAPPRIS P2 TSL 3 BASIC29.22■■■□□ 2.27
USP42Q9H9J4 SNHG12-212ENST00000531126 719 ntTSL 1 (best) BASIC29.22■■■□□ 2.27
USP42Q9H9J4 RHOF-204ENST00000537265 699 ntTSL 2 BASIC29.22■■■□□ 2.27
USP42Q9H9J4 ARRB2-210ENST00000572457 1660 ntTSL 5 BASIC29.22■■■□□ 2.27
USP42Q9H9J4 SCARA5-204ENST00000524352 1945 ntTSL 1 (best) BASIC29.22■■■□□ 2.27
USP42Q9H9J4 SPTSSA-201ENST00000298130 2777 ntAPPRIS P1 TSL 1 (best) BASIC29.22■■■□□ 2.27
USP42Q9H9J4 TSPY4-201ENST00000383008 1143 ntAPPRIS ALT2 TSL 5 BASIC29.21■■■□□ 2.27
USP42Q9H9J4 AL136090.1-201ENST00000446849 366 ntTSL 3 BASIC29.21■■■□□ 2.27
USP42Q9H9J4 AC011446.1-201ENST00000591825 458 ntTSL 2 BASIC29.21■■■□□ 2.27
USP42Q9H9J4 FCRLB-205ENST00000367948 1977 ntAPPRIS P1 TSL 1 (best) BASIC29.21■■■□□ 2.27
USP42Q9H9J4 AC020928.2-201ENST00000588717 2197 ntBASIC29.21■■■□□ 2.27
USP42Q9H9J4 NGEF-203ENST00000409079 1022 ntTSL 1 (best) BASIC29.2■■■□□ 2.27
USP42Q9H9J4 HERC2P4-206ENST00000568097 1062 ntTSL 5 BASIC29.2■■■□□ 2.27
USP42Q9H9J4 HRH3-203ENST00000611492 900 ntTSL 1 (best) BASIC29.2■■■□□ 2.27
Retrieved 100 of 98,524 protein–RNA pairs in 81.6 ms