Protein–RNA interactions for Protein: Q9H3Q1

CDC42EP4, Cdc42 effector protein 4, humanhuman

Known RBP Predictions only

Length 356 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDC42EP4Q9H3Q1 PPP1CC-206ENST00000550991 1882 ntTSL 2 BASIC23.32■■□□□ 1.32
CDC42EP4Q9H3Q1 MATK-202ENST00000395040 1907 ntAPPRIS ALT2 TSL 1 (best) BASIC23.32■■□□□ 1.32
CDC42EP4Q9H3Q1 GAS2L1-201ENST00000406549 1803 ntTSL 1 (best) BASIC23.32■■□□□ 1.32
CDC42EP4Q9H3Q1 NTHL1-201ENST00000219066 1067 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
CDC42EP4Q9H3Q1 MIR639-201ENST00000384974 98 ntBASIC23.32■■□□□ 1.32
CDC42EP4Q9H3Q1 MATK-204ENST00000585778 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC23.32■■□□□ 1.32
CDC42EP4Q9H3Q1 PCSK6-220ENST00000622483 3132 ntAPPRIS ALT2 TSL 1 (best) BASIC23.32■■□□□ 1.32
CDC42EP4Q9H3Q1 ASPSCR1-201ENST00000306729 2123 ntAPPRIS ALT2 TSL 2 BASIC23.32■■□□□ 1.32
CDC42EP4Q9H3Q1 PPT2-248ENST00000395523 2111 ntAPPRIS ALT2 TSL 5 BASIC23.32■■□□□ 1.32
CDC42EP4Q9H3Q1 CD37-213ENST00000598095 1598 ntTSL 2 BASIC23.31■■□□□ 1.32
CDC42EP4Q9H3Q1 KCNIP2-206ENST00000356640 1989 ntTSL 1 (best) BASIC23.31■■□□□ 1.32
CDC42EP4Q9H3Q1 DES-201ENST00000373960 2248 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
CDC42EP4Q9H3Q1 EID2B-201ENST00000326282 1865 ntAPPRIS P1 BASIC23.31■■□□□ 1.32
CDC42EP4Q9H3Q1 RPS2-202ENST00000526522 924 ntTSL 2 BASIC23.31■■□□□ 1.32
CDC42EP4Q9H3Q1 AC073188.6-202ENST00000616616 2281 ntTSL 1 (best) BASIC23.31■■□□□ 1.32
CDC42EP4Q9H3Q1 ANKRD9-204ENST00000559651 1444 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
CDC42EP4Q9H3Q1 LINC00565-201ENST00000562710 2331 ntBASIC23.31■■□□□ 1.32
CDC42EP4Q9H3Q1 SH3GLB2-203ENST00000372564 2982 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
CDC42EP4Q9H3Q1 USP36-218ENST00000590546 1771 ntTSL 1 (best) BASIC23.3■■□□□ 1.32
CDC42EP4Q9H3Q1 TMEM64-203ENST00000458549 4997 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
CDC42EP4Q9H3Q1 CRTAC1-202ENST00000370591 2348 ntAPPRIS P2 TSL 5 BASIC23.3■■□□□ 1.32
CDC42EP4Q9H3Q1 SDF2L1-201ENST00000248958 865 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
CDC42EP4Q9H3Q1 FAM98C-202ENST00000343358 1006 ntTSL 1 (best) BASIC23.3■■□□□ 1.32
CDC42EP4Q9H3Q1 ARHGEF9-204ENST00000374878 2217 ntTSL 1 (best) BASIC23.3■■□□□ 1.32
CDC42EP4Q9H3Q1 AC090877.2-201ENST00000558441 1738 ntBASIC23.3■■□□□ 1.32
CDC42EP4Q9H3Q1 FRS3-202ENST00000373018 2174 ntAPPRIS P1 TSL 3 BASIC23.3■■□□□ 1.32
CDC42EP4Q9H3Q1 DUSP22-201ENST00000344450 1485 ntTSL 1 (best) BASIC23.3■■□□□ 1.32
CDC42EP4Q9H3Q1 BARHL1-201ENST00000263610 2341 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
CDC42EP4Q9H3Q1 IDI1-201ENST00000381344 2301 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
CDC42EP4Q9H3Q1 TERT-206ENST00000508104 2486 ntTSL 5 BASIC23.3■■□□□ 1.32
CDC42EP4Q9H3Q1 NKIRAS2-206ENST00000393885 1909 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
CDC42EP4Q9H3Q1 U2AF1-201ENST00000291552 962 ntAPPRIS P3 TSL 1 (best) BASIC23.29■■□□□ 1.32
CDC42EP4Q9H3Q1 C1orf122-201ENST00000373042 973 ntAPPRIS P3 TSL 1 (best) BASIC23.29■■□□□ 1.32
CDC42EP4Q9H3Q1 UBXN2A-202ENST00000404924 1557 ntAPPRIS P1 TSL 2 BASIC23.29■■□□□ 1.32
CDC42EP4Q9H3Q1 PTPA-210ENST00000414510 1153 ntTSL 1 (best) BASIC23.29■■□□□ 1.32
CDC42EP4Q9H3Q1 TANGO2-207ENST00000420290 1859 ntTSL 2 BASIC23.29■■□□□ 1.32
CDC42EP4Q9H3Q1 FGF13-AS1-202ENST00000446383 584 ntTSL 3 BASIC23.29■■□□□ 1.32
CDC42EP4Q9H3Q1 HAS1-202ENST00000540069 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC23.29■■□□□ 1.32
CDC42EP4Q9H3Q1 PPP1R1B-201ENST00000254079 1845 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
CDC42EP4Q9H3Q1 GRM6-202ENST00000517717 2673 ntAPPRIS P1 TSL 5 BASIC23.28■■□□□ 1.32
CDC42EP4Q9H3Q1 MRPL10-202ENST00000351111 1725 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
CDC42EP4Q9H3Q1 RASGEF1B-211ENST00000514050 537 ntTSL 2 BASIC23.28■■□□□ 1.32
CDC42EP4Q9H3Q1 C6orf201-202ENST00000380175 1834 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
CDC42EP4Q9H3Q1 OSCAR-201ENST00000284648 2055 ntAPPRIS ALT2 TSL 1 (best) BASIC23.28■■□□□ 1.32
CDC42EP4Q9H3Q1 AF117829.1-207ENST00000504145 1572 ntTSL 3 BASIC23.27■■□□□ 1.32
CDC42EP4Q9H3Q1 RBFOX1-206ENST00000535565 1599 ntTSL 2 BASIC23.27■■□□□ 1.32
CDC42EP4Q9H3Q1 PPP2R3B-202ENST00000390665 2151 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
CDC42EP4Q9H3Q1 RHOBTB3-206ENST00000506817 1432 ntTSL 2 BASIC23.27■■□□□ 1.32
CDC42EP4Q9H3Q1 TMEM120A-214ENST00000493111 1456 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
CDC42EP4Q9H3Q1 EYA2-203ENST00000357410 2465 ntTSL 1 (best) BASIC23.27■■□□□ 1.32
CDC42EP4Q9H3Q1 GRIN2D-201ENST00000263269 5093 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
CDC42EP4Q9H3Q1 MROH6-202ENST00000524906 1794 ntAPPRIS ALT2 TSL 3 BASIC23.27■■□□□ 1.32
CDC42EP4Q9H3Q1 RGS6-209ENST00000553525 2005 ntAPPRIS ALT1 TSL 2 BASIC23.26■■□□□ 1.31
CDC42EP4Q9H3Q1 AL161729.1-201ENST00000604104 1402 ntBASIC23.26■■□□□ 1.31
CDC42EP4Q9H3Q1 DIXDC1-205ENST00000529225 1945 ntTSL 5 BASIC23.26■■□□□ 1.31
CDC42EP4Q9H3Q1 LRRC24-202ENST00000533758 1701 ntAPPRIS ALT2 TSL 5 BASIC23.26■■□□□ 1.31
CDC42EP4Q9H3Q1 PSMG4-206ENST00000438998 838 ntAPPRIS P1 TSL 2 BASIC23.26■■□□□ 1.31
CDC42EP4Q9H3Q1 HES4-204ENST00000484667 667 ntTSL 3 BASIC23.26■■□□□ 1.31
CDC42EP4Q9H3Q1 MIR7108-201ENST00000614319 87 ntBASIC23.26■■□□□ 1.31
CDC42EP4Q9H3Q1 STEAP2-204ENST00000394626 2456 ntTSL 2 BASIC23.26■■□□□ 1.31
CDC42EP4Q9H3Q1 RNF4-207ENST00000506706 2098 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
CDC42EP4Q9H3Q1 DENND1B-204ENST00000367396 2177 ntAPPRIS P3 TSL 1 (best) BASIC23.25■■□□□ 1.31
CDC42EP4Q9H3Q1 CNPY3-201ENST00000372836 1704 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
CDC42EP4Q9H3Q1 IFNGR2-202ENST00000381995 1742 ntAPPRIS ALT2 TSL 5 BASIC23.25■■□□□ 1.31
CDC42EP4Q9H3Q1 HTRA2-201ENST00000258080 2370 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
CDC42EP4Q9H3Q1 NXNL1-201ENST00000301944 946 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
CDC42EP4Q9H3Q1 YPEL1-202ENST00000403503 466 ntTSL 3 BASIC23.25■■□□□ 1.31
CDC42EP4Q9H3Q1 KLHL36-201ENST00000258157 1974 ntTSL 1 (best) BASIC23.25■■□□□ 1.31
CDC42EP4Q9H3Q1 TMEM98-202ENST00000394642 1683 ntAPPRIS P1 TSL 2 BASIC23.25■■□□□ 1.31
CDC42EP4Q9H3Q1 PNLIPRP2-205ENST00000611850 1407 ntTSL 5 BASIC23.25■■□□□ 1.31
CDC42EP4Q9H3Q1 H19-210ENST00000439725 1929 ntTSL 2 BASIC23.24■■□□□ 1.31
CDC42EP4Q9H3Q1 NKX6-2-201ENST00000368592 2673 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
CDC42EP4Q9H3Q1 ACOT12-204ENST00000513751 612 ntTSL 1 (best) BASIC23.24■■□□□ 1.31
CDC42EP4Q9H3Q1 CASTOR2-201ENST00000616305 1257 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
CDC42EP4Q9H3Q1 OPRD1-202ENST00000621425 1217 ntTSL 1 (best) BASIC23.24■■□□□ 1.31
CDC42EP4Q9H3Q1 POLR2J2-202ENST00000358438 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC23.24■■□□□ 1.31
CDC42EP4Q9H3Q1 POLR2J3-220ENST00000613744 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC23.24■■□□□ 1.31
CDC42EP4Q9H3Q1 CPSF4-204ENST00000436336 1738 ntAPPRIS ALT1 TSL 1 (best) BASIC23.24■■□□□ 1.31
CDC42EP4Q9H3Q1 IKZF1-207ENST00000413698 1808 ntTSL 1 (best) BASIC23.24■■□□□ 1.31
CDC42EP4Q9H3Q1 MOGS-202ENST00000409065 2668 ntTSL 5 BASIC23.24■■□□□ 1.31
CDC42EP4Q9H3Q1 SLC35D3-201ENST00000331858 2359 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
CDC42EP4Q9H3Q1 CREG1-201ENST00000370509 1974 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
CDC42EP4Q9H3Q1 NEIL1-206ENST00000564784 2019 ntAPPRIS P1 TSL 2 BASIC23.23■■□□□ 1.31
CDC42EP4Q9H3Q1 FPGS-204ENST00000393706 2230 ntTSL 2 BASIC23.23■■□□□ 1.31
CDC42EP4Q9H3Q1 CACNA1H-201ENST00000348261 8208 ntAPPRIS P4 TSL 1 (best) BASIC23.23■■□□□ 1.31
CDC42EP4Q9H3Q1 RCN2-201ENST00000320963 1750 ntTSL 5 BASIC23.23■■□□□ 1.31
CDC42EP4Q9H3Q1 LTK-202ENST00000355166 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC23.23■■□□□ 1.31
CDC42EP4Q9H3Q1 PSIP1-202ENST00000380716 1889 ntTSL 5 BASIC23.23■■□□□ 1.31
CDC42EP4Q9H3Q1 GUSBP5-202ENST00000510805 1989 ntBASIC23.23■■□□□ 1.31
CDC42EP4Q9H3Q1 AC009831.1-201ENST00000580420 1582 ntBASIC23.23■■□□□ 1.31
CDC42EP4Q9H3Q1 CIDEB-201ENST00000258807 2294 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
CDC42EP4Q9H3Q1 FAM83D-202ENST00000619850 2361 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
CDC42EP4Q9H3Q1 SEPT2-205ENST00000401990 1734 ntTSL 1 (best) BASIC23.22■■□□□ 1.31
CDC42EP4Q9H3Q1 ZNF354A-201ENST00000335815 2484 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
CDC42EP4Q9H3Q1 RALB-201ENST00000272519 2344 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
CDC42EP4Q9H3Q1 PPP4C-201ENST00000279387 1407 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
CDC42EP4Q9H3Q1 PRKAR1B-211ENST00000537384 2533 ntAPPRIS P1 TSL 5 BASIC23.22■■□□□ 1.31
CDC42EP4Q9H3Q1 SKIDA1-201ENST00000444772 2667 ntAPPRIS ALT2 TSL 5 BASIC23.22■■□□□ 1.31
CDC42EP4Q9H3Q1 FAM136A-201ENST00000037869 1810 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
CDC42EP4Q9H3Q1 CPE-201ENST00000402744 2421 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
Retrieved 100 of 98,524 protein–RNA pairs in 29.2 ms