Protein–RNA interactions for Protein: Q96NR3

PTCHD1, Patched domain-containing protein 1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD1Q96NR3 USF2-201ENST00000222305 1634 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
PTCHD1Q96NR3 LRIG1-202ENST00000383703 5283 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
PTCHD1Q96NR3 TSEN34-201ENST00000302937 2294 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
PTCHD1Q96NR3 MOSPD3-204ENST00000424091 1115 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
PTCHD1Q96NR3 TMEM218-215ENST00000532407 1103 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
PTCHD1Q96NR3 OSCAR-207ENST00000391761 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC21.56■■□□□ 1.04
PTCHD1Q96NR3 PREB-202ENST00000406567 1910 ntTSL 5 BASIC21.56■■□□□ 1.04
PTCHD1Q96NR3 GOLGA7-201ENST00000357743 2027 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
PTCHD1Q96NR3 HNRNPAB-208ENST00000515193 1595 ntAPPRIS ALT2 TSL 5 BASIC21.56■■□□□ 1.04
PTCHD1Q96NR3 GATS-205ENST00000436886 2726 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
PTCHD1Q96NR3 ADSSL1-202ENST00000332972 1969 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
PTCHD1Q96NR3 FAHD1-203ENST00000427358 1974 ntAPPRIS P1 BASIC21.56■■□□□ 1.04
PTCHD1Q96NR3 STMN4-201ENST00000265770 1250 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
PTCHD1Q96NR3 YIF1A-201ENST00000359461 943 ntTSL 2 BASIC21.55■■□□□ 1.04
PTCHD1Q96NR3 YIF1A-203ENST00000376901 1124 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
PTCHD1Q96NR3 CD72-202ENST00000378430 585 ntTSL 3 BASIC21.55■■□□□ 1.04
PTCHD1Q96NR3 CHKB-AS1-201ENST00000380711 578 ntTSL 2 BASIC21.55■■□□□ 1.04
PTCHD1Q96NR3 AC243829.1-202ENST00000618848 486 ntTSL 3 BASIC21.55■■□□□ 1.04
PTCHD1Q96NR3 MFSD7-202ENST00000347950 1599 ntTSL 2 BASIC21.55■■□□□ 1.04
PTCHD1Q96NR3 TANGO2-207ENST00000420290 1859 ntTSL 2 BASIC21.55■■□□□ 1.04
PTCHD1Q96NR3 HSF4-225ENST00000584272 1549 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
PTCHD1Q96NR3 AL161729.1-201ENST00000604104 1402 ntBASIC21.55■■□□□ 1.04
PTCHD1Q96NR3 CD37-213ENST00000598095 1598 ntTSL 2 BASIC21.54■■□□□ 1.04
PTCHD1Q96NR3 P2RX2-205ENST00000352418 1200 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
PTCHD1Q96NR3 CLTA-206ENST00000466396 695 ntTSL 2 BASIC21.54■■□□□ 1.04
PTCHD1Q96NR3 ERRFI1-203ENST00000469499 995 ntTSL 3 BASIC21.54■■□□□ 1.04
PTCHD1Q96NR3 TRAF7-203ENST00000565383 799 ntTSL 5 BASIC21.54■■□□□ 1.04
PTCHD1Q96NR3 TCEA1-214ENST00000640382 1234 ntTSL 5 BASIC21.54■■□□□ 1.04
PTCHD1Q96NR3 MAP2K2-201ENST00000262948 1734 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
PTCHD1Q96NR3 C1orf35-201ENST00000272139 1427 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
PTCHD1Q96NR3 MSX2-201ENST00000239243 2241 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
PTCHD1Q96NR3 CDIPT-207ENST00000566113 1671 ntTSL 2 BASIC21.53■■□□□ 1.04
PTCHD1Q96NR3 ZNF174-202ENST00000344823 1557 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
PTCHD1Q96NR3 TRIM7-202ENST00000334421 1228 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
PTCHD1Q96NR3 TSPAN17-204ENST00000503045 1019 ntTSL 5 BASIC21.53■■□□□ 1.04
PTCHD1Q96NR3 SLC16A10-206ENST00000612036 1231 ntTSL 5 BASIC21.53■■□□□ 1.04
PTCHD1Q96NR3 SMOX-202ENST00000305958 2233 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
PTCHD1Q96NR3 ZNF767P-202ENST00000472212 2100 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
PTCHD1Q96NR3 EVX1-201ENST00000222761 1500 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
PTCHD1Q96NR3 PCMTD2-202ENST00000299468 1049 ntTSL 5 BASIC21.52■■□□□ 1.04
PTCHD1Q96NR3 AL136090.1-201ENST00000446849 366 ntTSL 3 BASIC21.52■■□□□ 1.04
PTCHD1Q96NR3 NBPF26-209ENST00000624419 1133 ntTSL 5 BASIC21.52■■□□□ 1.04
PTCHD1Q96NR3 LINC01124-201ENST00000409786 2117 ntBASIC21.52■■□□□ 1.03
PTCHD1Q96NR3 DYRK1B-201ENST00000323039 2535 ntAPPRIS P3 TSL 1 (best) BASIC21.51■■□□□ 1.03
PTCHD1Q96NR3 GNPTG-201ENST00000204679 1983 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
PTCHD1Q96NR3 TMED2-201ENST00000262225 2560 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
PTCHD1Q96NR3 FAR2P4-203ENST00000560285 1739 ntTSL 2 BASIC21.51■■□□□ 1.03
PTCHD1Q96NR3 C6orf89-201ENST00000355190 1309 ntAPPRIS P3 TSL 1 (best) BASIC21.51■■□□□ 1.03
PTCHD1Q96NR3 SUGCT-201ENST00000335693 1645 ntAPPRIS ALT2 TSL 1 (best) BASIC21.51■■□□□ 1.03
PTCHD1Q96NR3 EPM2A-209ENST00000638262 2679 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
PTCHD1Q96NR3 RPIA-201ENST00000283646 1848 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
PTCHD1Q96NR3 REST-206ENST00000612429 1376 ntTSL 5 BASIC21.5■■□□□ 1.03
PTCHD1Q96NR3 REST-207ENST00000616975 1370 ntTSL 5 BASIC21.5■■□□□ 1.03
PTCHD1Q96NR3 REST-212ENST00000640343 1352 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
PTCHD1Q96NR3 CBARP-202ENST00000382477 2453 ntAPPRIS ALT2 TSL 5 BASIC21.5■■□□□ 1.03
PTCHD1Q96NR3 TFPT-201ENST00000391757 774 ntTSL 5 BASIC21.5■■□□□ 1.03
PTCHD1Q96NR3 TFPT-202ENST00000391758 804 ntAPPRIS ALT2 TSL 1 (best) BASIC21.5■■□□□ 1.03
PTCHD1Q96NR3 IRF3-227ENST00000600911 1637 ntTSL 5 BASIC21.5■■□□□ 1.03
PTCHD1Q96NR3 C11orf95-202ENST00000433688 5716 ntAPPRIS P1 TSL 5 BASIC21.5■■□□□ 1.03
PTCHD1Q96NR3 PYCR1-203ENST00000402252 1346 ntTSL 2 BASIC21.5■■□□□ 1.03
PTCHD1Q96NR3 NKX6-3-201ENST00000518699 1352 ntAPPRIS P1 TSL 5 BASIC21.49■■□□□ 1.03
PTCHD1Q96NR3 SPAG16-201ENST00000272898 1059 ntTSL 5 BASIC21.49■■□□□ 1.03
PTCHD1Q96NR3 AC004540.2-202ENST00000451264 508 ntTSL 2 BASIC21.49■■□□□ 1.03
PTCHD1Q96NR3 TXNRD2-201ENST00000334363 1893 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
PTCHD1Q96NR3 FAM83F-202ENST00000473717 1917 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
PTCHD1Q96NR3 KRT10-201ENST00000269576 2124 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
PTCHD1Q96NR3 CCM2L-201ENST00000262659 2523 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
PTCHD1Q96NR3 CLPTM1-201ENST00000337392 2604 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
PTCHD1Q96NR3 SLC22A31-206ENST00000614943 1860 ntTSL 5 BASIC21.48■■□□□ 1.03
PTCHD1Q96NR3 CHAC1-201ENST00000444189 1204 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
PTCHD1Q96NR3 AK3-203ENST00000447596 705 ntTSL 2 BASIC21.48■■□□□ 1.03
PTCHD1Q96NR3 SLC25A39-203ENST00000537904 1274 ntTSL 2 BASIC21.48■■□□□ 1.03
PTCHD1Q96NR3 LINC00092-201ENST00000412122 1726 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
PTCHD1Q96NR3 AC005703.6-201ENST00000623265 1329 ntBASIC21.48■■□□□ 1.03
PTCHD1Q96NR3 NUDT18-202ENST00000613958 1754 ntTSL 2 BASIC21.48■■□□□ 1.03
PTCHD1Q96NR3 RBFOX1-206ENST00000535565 1599 ntTSL 2 BASIC21.48■■□□□ 1.03
PTCHD1Q96NR3 S100A6-201ENST00000368719 665 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
PTCHD1Q96NR3 TMEM147-203ENST00000392205 767 ntTSL 2 BASIC21.47■■□□□ 1.03
PTCHD1Q96NR3 ARPC4-208ENST00000498623 942 ntTSL 2 BASIC21.47■■□□□ 1.03
PTCHD1Q96NR3 PRSS21-201ENST00000005995 1101 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
PTCHD1Q96NR3 AL356740.2-201ENST00000601559 647 ntBASIC21.47■■□□□ 1.03
PTCHD1Q96NR3 AL117332.1-201ENST00000622628 974 ntBASIC21.47■■□□□ 1.03
PTCHD1Q96NR3 GJC1-209ENST00000592524 1837 ntAPPRIS P1 TSL 2 BASIC21.47■■□□□ 1.03
PTCHD1Q96NR3 GP1BB-201ENST00000366425 1553 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
PTCHD1Q96NR3 ANO1-202ENST00000355303 4790 ntAPPRIS P2 TSL 1 (best) BASIC21.47■■□□□ 1.03
PTCHD1Q96NR3 ADIPOR1-201ENST00000340990 2177 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
PTCHD1Q96NR3 PLD4-201ENST00000392593 6515 ntAPPRIS P3 TSL 1 (best) BASIC21.47■■□□□ 1.03
PTCHD1Q96NR3 GALNT12-201ENST00000375011 2735 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
PTCHD1Q96NR3 AP000802.1-201ENST00000500537 1934 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
PTCHD1Q96NR3 ADRM1-205ENST00000620230 1361 ntTSL 5 BASIC21.47■■□□□ 1.03
PTCHD1Q96NR3 CPLX1-203ENST00000505203 2011 ntTSL 2 BASIC21.46■■□□□ 1.03
PTCHD1Q96NR3 CREB3L3-205ENST00000602257 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC21.46■■□□□ 1.03
PTCHD1Q96NR3 NRL-202ENST00000396997 1517 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
PTCHD1Q96NR3 SEPT5-201ENST00000383045 1588 ntTSL 5 BASIC21.46■■□□□ 1.03
PTCHD1Q96NR3 PEMT-201ENST00000255389 1013 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
PTCHD1Q96NR3 SUMF1-205ENST00000458465 1102 ntTSL 2 BASIC21.46■■□□□ 1.03
PTCHD1Q96NR3 BOP1-205ENST00000569669 2303 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
PTCHD1Q96NR3 EEF1D-203ENST00000419152 1452 ntAPPRIS ALT2 TSL 5 BASIC21.45■■□□□ 1.03
PTCHD1Q96NR3 MADCAM1-206ENST00000617201 1491 ntAPPRIS ALT2 TSL 5 BASIC21.45■■□□□ 1.03
PTCHD1Q96NR3 MADCAM1-207ENST00000619333 1485 ntAPPRIS ALT2 TSL 5 BASIC21.45■■□□□ 1.03
Retrieved 100 of 98,524 protein–RNA pairs in 18.3 ms