Protein–RNA interactions for Protein: Q96AY4

TTC28, Tetratricopeptide repeat protein 28, humanhuman

Predictions only

Length 2,481 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28Q96AY4 ACP4-201ENST00000270593 1347 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
TTC28Q96AY4 SV2B-203ENST00000545111 2099 ntTSL 2 BASIC23.85■■□□□ 1.41
TTC28Q96AY4 LBH-205ENST00000407930 756 ntTSL 2 BASIC23.85■■□□□ 1.41
TTC28Q96AY4 HRASLS-201ENST00000264735 1066 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
TTC28Q96AY4 SLC35A3-218ENST00000639994 1114 ntTSL 5 BASIC23.84■■□□□ 1.41
TTC28Q96AY4 ST7L-206ENST00000369666 1815 ntTSL 1 (best) BASIC23.84■■□□□ 1.41
TTC28Q96AY4 CERS1-201ENST00000429504 2094 ntTSL 1 (best) BASIC23.84■■□□□ 1.41
TTC28Q96AY4 RASGRP2-209ENST00000394429 453 ntTSL 3 BASIC23.84■■□□□ 1.41
TTC28Q96AY4 COX4I1-216ENST00000568794 794 ntTSL 5 BASIC23.84■■□□□ 1.41
TTC28Q96AY4 AICDA-202ENST00000537228 667 ntTSL 5 BASIC23.83■■□□□ 1.41
TTC28Q96AY4 LINC01976-201ENST00000565120 434 ntTSL 2 BASIC23.83■■□□□ 1.41
TTC28Q96AY4 NUDT18-201ENST00000611621 1497 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
TTC28Q96AY4 MYCBPAP-202ENST00000419930 1640 ntAPPRIS ALT2 TSL 1 (best) BASIC23.83■■□□□ 1.4
TTC28Q96AY4 HSF4-225ENST00000584272 1549 ntTSL 1 (best) BASIC23.83■■□□□ 1.4
TTC28Q96AY4 PIGP-203ENST00000399098 972 ntTSL 1 (best) BASIC23.83■■□□□ 1.4
TTC28Q96AY4 TALDO1-201ENST00000319006 1346 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
TTC28Q96AY4 LEFTY1-201ENST00000272134 1626 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
TTC28Q96AY4 CRACR2B-202ENST00000525077 1578 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
TTC28Q96AY4 JADE2-211ENST00000612830 1251 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
TTC28Q96AY4 CTDSP2-204ENST00000548823 1368 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
TTC28Q96AY4 BHLHA15-201ENST00000314018 706 ntAPPRIS P1 BASIC23.82■■□□□ 1.4
TTC28Q96AY4 ZNF451-202ENST00000370702 458 ntTSL 2 BASIC23.82■■□□□ 1.4
TTC28Q96AY4 MCHR1-202ENST00000381433 1219 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
TTC28Q96AY4 BHLHA15-202ENST00000609256 796 ntAPPRIS P1 TSL 3 BASIC23.82■■□□□ 1.4
TTC28Q96AY4 PRKCQ-AS1-204ENST00000455810 920 ntTSL 2 BASIC23.81■■□□□ 1.4
TTC28Q96AY4 COX6C-208ENST00000522940 694 ntAPPRIS P1 TSL 3 BASIC23.81■■□□□ 1.4
TTC28Q96AY4 RAD21-AS1-201ENST00000521487 2010 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
TTC28Q96AY4 AC074212.1-201ENST00000559756 1402 ntTSL 3 BASIC23.81■■□□□ 1.4
TTC28Q96AY4 AP003419.1-201ENST00000535922 470 ntTSL 3 BASIC23.81■■□□□ 1.4
TTC28Q96AY4 SEPT4-215ENST00000580809 952 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
TTC28Q96AY4 AL354811.1-201ENST00000610286 706 ntBASIC23.81■■□□□ 1.4
TTC28Q96AY4 CAPNS1-215ENST00000628018 1509 ntAPPRIS ALT2 TSL 5 BASIC23.8■■□□□ 1.4
TTC28Q96AY4 CRTAP-202ENST00000449224 1811 ntAPPRIS ALT2 TSL 2 BASIC23.8■■□□□ 1.4
TTC28Q96AY4 TMEM260-202ENST00000538838 1638 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
TTC28Q96AY4 GNAS-207ENST00000354359 1975 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
TTC28Q96AY4 GNAS-210ENST00000371085 1972 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
TTC28Q96AY4 ZFAND2B-202ENST00000409097 1765 ntTSL 2 BASIC23.8■■□□□ 1.4
TTC28Q96AY4 EIF3J-202ENST00000424492 1550 ntTSL 4 BASIC23.8■■□□□ 1.4
TTC28Q96AY4 KCNK3-202ENST00000620977 1956 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
TTC28Q96AY4 CRACR2B-201ENST00000450448 1663 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
TTC28Q96AY4 ZNHIT2-201ENST00000310597 1306 ntAPPRIS P1 BASIC23.79■■□□□ 1.4
TTC28Q96AY4 OSCAR-203ENST00000356532 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC23.79■■□□□ 1.4
TTC28Q96AY4 OSCAR-204ENST00000358375 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC23.79■■□□□ 1.4
TTC28Q96AY4 OSCAR-210ENST00000616447 1358 ntAPPRIS ALT2 TSL 5 BASIC23.79■■□□□ 1.4
TTC28Q96AY4 CCDC71L-201ENST00000315965 1575 ntAPPRIS ALT2 TSL 5 BASIC23.79■■□□□ 1.4
TTC28Q96AY4 MRPS2-202ENST00000371785 1640 ntAPPRIS P1 TSL 3 BASIC23.79■■□□□ 1.4
TTC28Q96AY4 PXDC1-202ENST00000380283 2190 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
TTC28Q96AY4 SSNA1-201ENST00000322310 896 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
TTC28Q96AY4 ANKRD63-201ENST00000434396 1143 ntAPPRIS P1 BASIC23.79■■□□□ 1.4
TTC28Q96AY4 AC080023.1-201ENST00000526906 803 ntTSL 2 BASIC23.79■■□□□ 1.4
TTC28Q96AY4 AC007216.1-201ENST00000570197 601 ntTSL 4 BASIC23.79■■□□□ 1.4
TTC28Q96AY4 KANSL1L-207ENST00000452086 2334 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
TTC28Q96AY4 NDUFS3-201ENST00000263774 958 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
TTC28Q96AY4 GUK1-201ENST00000312726 1084 ntAPPRIS P3 TSL 1 (best) BASIC23.78■■□□□ 1.4
TTC28Q96AY4 AQP12B-201ENST00000407834 1094 ntAPPRIS P2 TSL 1 (best) BASIC23.78■■□□□ 1.4
TTC28Q96AY4 AC126544.1-201ENST00000580842 1059 ntBASIC23.78■■□□□ 1.4
TTC28Q96AY4 ZNF747-203ENST00000568028 1511 ntAPPRIS P1 TSL 2 BASIC23.78■■□□□ 1.4
TTC28Q96AY4 TTLL1-201ENST00000266254 1645 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
TTC28Q96AY4 ANKRD16-202ENST00000380092 1646 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
TTC28Q96AY4 SLIT1-203ENST00000371041 1695 ntTSL 2 BASIC23.78■■□□□ 1.4
TTC28Q96AY4 CTU1-201ENST00000421832 2087 ntAPPRIS P1 TSL 2 BASIC23.78■■□□□ 1.4
TTC28Q96AY4 NRARP-201ENST00000356628 1770 ntAPPRIS P1 BASIC23.78■■□□□ 1.4
TTC28Q96AY4 VAX1-202ENST00000369206 1723 ntAPPRIS P1 TSL 5 BASIC23.77■■□□□ 1.4
TTC28Q96AY4 CREB3L3-205ENST00000602257 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC23.77■■□□□ 1.4
TTC28Q96AY4 MME-202ENST00000382989 1319 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
TTC28Q96AY4 TMEM147-203ENST00000392205 767 ntTSL 2 BASIC23.77■■□□□ 1.4
TTC28Q96AY4 HAGH-203ENST00000455446 1276 ntTSL 2 BASIC23.77■■□□□ 1.4
TTC28Q96AY4 ZFYVE28-207ENST00000509171 1135 ntTSL 2 BASIC23.77■■□□□ 1.4
TTC28Q96AY4 PPP1CC-206ENST00000550991 1882 ntTSL 2 BASIC23.77■■□□□ 1.4
TTC28Q96AY4 ALKBH7-201ENST00000245812 1332 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
TTC28Q96AY4 TMEM218-201ENST00000279968 1034 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
TTC28Q96AY4 MRM1-203ENST00000612760 1284 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
TTC28Q96AY4 BID-214ENST00000617586 542 ntTSL 5 BASIC23.76■■□□□ 1.39
TTC28Q96AY4 TSPAN33-201ENST00000486685 1863 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
TTC28Q96AY4 TCTEX1D4-201ENST00000339355 763 ntAPPRIS P1 BASIC23.75■■□□□ 1.39
TTC28Q96AY4 SLC22A15-201ENST00000369502 1230 ntTSL 2 BASIC23.75■■□□□ 1.39
TTC28Q96AY4 HSCB-202ENST00000398941 955 ntTSL 2 BASIC23.75■■□□□ 1.39
TTC28Q96AY4 LTB-210ENST00000429299 897 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
TTC28Q96AY4 AC069152.1-201ENST00000438030 544 ntBASIC23.75■■□□□ 1.39
TTC28Q96AY4 AP000282.1-201ENST00000454622 682 ntTSL 2 BASIC23.75■■□□□ 1.39
TTC28Q96AY4 DBI-210ENST00000542275 757 ntTSL 5 BASIC23.75■■□□□ 1.39
TTC28Q96AY4 AC004528.2-201ENST00000610701 440 ntTSL 5 BASIC23.75■■□□□ 1.39
TTC28Q96AY4 WWOX-218ENST00000627394 894 ntTSL 5 BASIC23.75■■□□□ 1.39
TTC28Q96AY4 EPO-201ENST00000252723 1330 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
TTC28Q96AY4 CKLF-205ENST00000417030 628 ntAPPRIS ALT2 TSL 4 BASIC23.75■■□□□ 1.39
TTC28Q96AY4 AC090877.2-201ENST00000558441 1738 ntBASIC23.75■■□□□ 1.39
TTC28Q96AY4 SCN1B-206ENST00000638536 1600 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
TTC28Q96AY4 MARCH2-201ENST00000215555 1376 ntAPPRIS P1 TSL 5 BASIC23.75■■□□□ 1.39
TTC28Q96AY4 EMC7-201ENST00000256545 1155 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
TTC28Q96AY4 AGAP1-IT1-201ENST00000440498 664 ntTSL 3 BASIC23.74■■□□□ 1.39
TTC28Q96AY4 AL645608.9-201ENST00000442292 829 ntTSL 1 (best) BASIC23.74■■□□□ 1.39
TTC28Q96AY4 MCRIP1-205ENST00000572645 1038 ntTSL 1 (best) BASIC23.74■■□□□ 1.39
TTC28Q96AY4 TBCB-214ENST00000629269 413 ntTSL 5 BASIC23.74■■□□□ 1.39
TTC28Q96AY4 CCDC61-204ENST00000595358 1817 ntAPPRIS P2 TSL 5 BASIC23.74■■□□□ 1.39
TTC28Q96AY4 CHKA-202ENST00000356135 1755 ntAPPRIS ALT2 TSL 1 (best) BASIC23.74■■□□□ 1.39
TTC28Q96AY4 PLPP2-202ENST00000327790 1397 ntTSL 5 BASIC23.74■■□□□ 1.39
TTC28Q96AY4 C15orf59-201ENST00000379822 1342 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
TTC28Q96AY4 NINJ1-201ENST00000375446 1281 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
TTC28Q96AY4 RNF208-201ENST00000391553 1077 ntAPPRIS P1 BASIC23.74■■□□□ 1.39
TTC28Q96AY4 RNF208-202ENST00000392827 1135 ntAPPRIS P1 TSL 5 BASIC23.74■■□□□ 1.39
Retrieved 100 of 98,524 protein–RNA pairs in 44.5 ms