Protein–RNA interactions for Protein: Q8TAU0

NKX2-3, Homeobox protein Nkx-2.3, humanhuman

Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-3Q8TAU0 LINC01124-201ENST00000409786 2117 ntBASIC27.28■■□□□ 1.96
NKX2-3Q8TAU0 C14orf80-204ENST00000392522 1630 ntAPPRIS P4 TSL 5 BASIC27.28■■□□□ 1.96
NKX2-3Q8TAU0 PFKFB4-204ENST00000416568 1575 ntTSL 1 (best) BASIC27.28■■□□□ 1.96
NKX2-3Q8TAU0 ARL6IP4-210ENST00000453766 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC27.28■■□□□ 1.96
NKX2-3Q8TAU0 LRRC61-205ENST00000493307 1456 ntAPPRIS P1 TSL 5 BASIC27.28■■□□□ 1.96
NKX2-3Q8TAU0 TNFRSF25-201ENST00000348333 1119 ntTSL 1 (best) BASIC27.28■■□□□ 1.96
NKX2-3Q8TAU0 TNFRSF25-202ENST00000351748 705 ntTSL 1 (best) BASIC27.28■■□□□ 1.96
NKX2-3Q8TAU0 YTHDF1-201ENST00000370334 747 ntTSL 3 BASIC27.28■■□□□ 1.96
NKX2-3Q8TAU0 MPP5-205ENST00000556345 1163 ntTSL 2 BASIC27.28■■□□□ 1.96
NKX2-3Q8TAU0 SLC16A10-206ENST00000612036 1231 ntTSL 5 BASIC27.28■■□□□ 1.96
NKX2-3Q8TAU0 EED-207ENST00000528180 1745 ntTSL 5 BASIC27.27■■□□□ 1.96
NKX2-3Q8TAU0 EMC9-201ENST00000216799 835 ntAPPRIS P1 TSL 1 (best) BASIC27.27■■□□□ 1.96
NKX2-3Q8TAU0 LRRC1-201ENST00000370882 808 ntTSL 3 BASIC27.27■■□□□ 1.96
NKX2-3Q8TAU0 CD63-202ENST00000420846 981 ntAPPRIS P1 TSL 5 BASIC27.27■■□□□ 1.96
NKX2-3Q8TAU0 EPHA10-211ENST00000540011 720 ntTSL 5 BASIC27.27■■□□□ 1.96
NKX2-3Q8TAU0 SNX5-217ENST00000606557 1087 ntBASIC27.27■■□□□ 1.96
NKX2-3Q8TAU0 COMMD5-201ENST00000305103 1373 ntAPPRIS P1 TSL 1 (best) BASIC27.26■■□□□ 1.95
NKX2-3Q8TAU0 FAM124A-204ENST00000615498 2383 ntTSL 1 (best) BASIC27.26■■□□□ 1.95
NKX2-3Q8TAU0 WBP1-203ENST00000409737 1110 ntAPPRIS ALT1 TSL 5 BASIC27.26■■□□□ 1.95
NKX2-3Q8TAU0 FAM83F-202ENST00000473717 1917 ntTSL 1 (best) BASIC27.26■■□□□ 1.95
NKX2-3Q8TAU0 ARSB-206ENST00000565165 1772 ntTSL 1 (best) BASIC27.25■■□□□ 1.95
NKX2-3Q8TAU0 MAP3K3-210ENST00000584573 2480 ntTSL 1 (best) BASIC27.25■■□□□ 1.95
NKX2-3Q8TAU0 NAXE-201ENST00000368233 1012 ntTSL 2 BASIC27.25■■□□□ 1.95
NKX2-3Q8TAU0 ZNRF2P3-201ENST00000424200 374 ntBASIC27.25■■□□□ 1.95
NKX2-3Q8TAU0 CLTA-204ENST00000433436 1235 ntAPPRIS ALT1 TSL 1 (best) BASIC27.25■■□□□ 1.95
NKX2-3Q8TAU0 CLTA-209ENST00000538225 1181 ntTSL 2 BASIC27.25■■□□□ 1.95
NKX2-3Q8TAU0 CLTA-210ENST00000540080 989 ntTSL 2 BASIC27.25■■□□□ 1.95
NKX2-3Q8TAU0 ZNF584-205ENST00000596281 575 ntTSL 2 BASIC27.25■■□□□ 1.95
NKX2-3Q8TAU0 AC243829.1-202ENST00000618848 486 ntTSL 3 BASIC27.25■■□□□ 1.95
NKX2-3Q8TAU0 HNRNPAB-208ENST00000515193 1595 ntAPPRIS ALT2 TSL 5 BASIC27.25■■□□□ 1.95
NKX2-3Q8TAU0 ZNF444-211ENST00000592949 1906 ntAPPRIS ALT2 TSL 1 (best) BASIC27.25■■□□□ 1.95
NKX2-3Q8TAU0 SMOX-202ENST00000305958 2233 ntAPPRIS P1 TSL 1 (best) BASIC27.25■■□□□ 1.95
NKX2-3Q8TAU0 SMOX-201ENST00000278795 2164 ntTSL 1 (best) BASIC27.25■■□□□ 1.95
NKX2-3Q8TAU0 CAMK1-201ENST00000256460 1488 ntAPPRIS P1 TSL 1 (best) BASIC27.25■■□□□ 1.95
NKX2-3Q8TAU0 RPP38-201ENST00000378197 1457 ntAPPRIS P1 TSL 1 (best) BASIC27.25■■□□□ 1.95
NKX2-3Q8TAU0 RBM42-206ENST00000592202 1469 ntTSL 5 BASIC27.25■■□□□ 1.95
NKX2-3Q8TAU0 ADPRHL2-201ENST00000373178 1668 ntAPPRIS P1 TSL 1 (best) BASIC27.24■■□□□ 1.95
NKX2-3Q8TAU0 USF2-201ENST00000222305 1634 ntAPPRIS P1 TSL 1 (best) BASIC27.24■■□□□ 1.95
NKX2-3Q8TAU0 P2RX2-202ENST00000348800 1222 ntAPPRIS ALT2 TSL 1 (best) BASIC27.24■■□□□ 1.95
NKX2-3Q8TAU0 P2RX2-204ENST00000351222 1140 ntTSL 1 (best) BASIC27.24■■□□□ 1.95
NKX2-3Q8TAU0 P2RX2-207ENST00000449132 1113 ntTSL 1 (best) BASIC27.24■■□□□ 1.95
NKX2-3Q8TAU0 SUGCT-201ENST00000335693 1645 ntAPPRIS ALT2 TSL 1 (best) BASIC27.23■■□□□ 1.95
NKX2-3Q8TAU0 CLTA-206ENST00000466396 695 ntTSL 2 BASIC27.23■■□□□ 1.95
NKX2-3Q8TAU0 MYL5-208ENST00000511290 781 ntTSL 1 (best) BASIC27.23■■□□□ 1.95
NKX2-3Q8TAU0 AC009097.2-201ENST00000562763 465 ntTSL 2 BASIC27.23■■□□□ 1.95
NKX2-3Q8TAU0 RNF225-201ENST00000601382 990 ntAPPRIS P1 BASIC27.23■■□□□ 1.95
NKX2-3Q8TAU0 AL117336.3-202ENST00000605499 489 ntTSL 3 BASIC27.23■■□□□ 1.95
NKX2-3Q8TAU0 MIR5787-201ENST00000611784 55 ntBASIC27.23■■□□□ 1.95
NKX2-3Q8TAU0 MAP2K2-201ENST00000262948 1734 ntAPPRIS P1 TSL 1 (best) BASIC27.23■■□□□ 1.95
NKX2-3Q8TAU0 FAR2P4-203ENST00000560285 1739 ntTSL 2 BASIC27.23■■□□□ 1.95
NKX2-3Q8TAU0 AC004812.2-201ENST00000611079 2094 ntBASIC27.23■■□□□ 1.95
NKX2-3Q8TAU0 LRRC24-202ENST00000533758 1701 ntAPPRIS ALT2 TSL 5 BASIC27.22■■□□□ 1.95
NKX2-3Q8TAU0 PURG-202ENST00000475541 2875 ntAPPRIS P1 BASIC27.22■■□□□ 1.95
NKX2-3Q8TAU0 AC026271.2-201ENST00000428091 497 ntBASIC27.22■■□□□ 1.95
NKX2-3Q8TAU0 LINC00472-204ENST00000436803 667 ntTSL 5 BASIC27.22■■□□□ 1.95
NKX2-3Q8TAU0 C12orf75-207ENST00000552457 689 ntTSL 5 BASIC27.22■■□□□ 1.95
NKX2-3Q8TAU0 MTDHP2-201ENST00000601468 714 ntBASIC27.22■■□□□ 1.95
NKX2-3Q8TAU0 MIR4466-201ENST00000606121 54 ntBASIC27.22■■□□□ 1.95
NKX2-3Q8TAU0 NDEL1-201ENST00000334527 2372 ntAPPRIS P1 TSL 1 (best) BASIC27.22■■□□□ 1.95
NKX2-3Q8TAU0 NUDT18-202ENST00000613958 1754 ntTSL 2 BASIC27.22■■□□□ 1.95
NKX2-3Q8TAU0 MRPL10-202ENST00000351111 1725 ntAPPRIS P1 TSL 1 (best) BASIC27.21■■□□□ 1.95
NKX2-3Q8TAU0 AP2S1-201ENST00000263270 935 ntAPPRIS P3 TSL 1 (best) BASIC27.21■■□□□ 1.95
NKX2-3Q8TAU0 CBR3-201ENST00000290354 1169 ntAPPRIS P1 TSL 1 (best) BASIC27.21■■□□□ 1.95
NKX2-3Q8TAU0 CRLF1-201ENST00000392386 1792 ntAPPRIS P1 TSL 1 (best) BASIC27.21■■□□□ 1.95
NKX2-3Q8TAU0 LINC02043-201ENST00000419745 1832 ntTSL 2 BASIC27.2■■□□□ 1.95
NKX2-3Q8TAU0 IKBKG-211ENST00000615874 1460 ntTSL 5 BASIC27.2■■□□□ 1.95
NKX2-3Q8TAU0 IKBKG-215ENST00000619941 1463 ntTSL 5 BASIC27.2■■□□□ 1.95
NKX2-3Q8TAU0 AGBL5-201ENST00000323064 2382 ntAPPRIS ALT2 TSL 1 (best) BASIC27.2■■□□□ 1.95
NKX2-3Q8TAU0 NPW-201ENST00000329610 498 ntAPPRIS P2 TSL 1 (best) BASIC27.2■■□□□ 1.94
NKX2-3Q8TAU0 MRPL41-201ENST00000371443 1262 ntAPPRIS P1 TSL 1 (best) BASIC27.2■■□□□ 1.94
NKX2-3Q8TAU0 PARD6B-202ENST00000396039 522 ntTSL 1 (best) BASIC27.2■■□□□ 1.94
NKX2-3Q8TAU0 AC004540.2-202ENST00000451264 508 ntTSL 2 BASIC27.2■■□□□ 1.94
NKX2-3Q8TAU0 HSF4-225ENST00000584272 1549 ntTSL 1 (best) BASIC27.2■■□□□ 1.94
NKX2-3Q8TAU0 PLEKHA8-202ENST00000396257 1907 ntTSL 1 (best) BASIC27.2■■□□□ 1.94
NKX2-3Q8TAU0 ADSSL1-201ENST00000330877 1766 ntAPPRIS P1 TSL 1 (best) BASIC27.2■■□□□ 1.94
NKX2-3Q8TAU0 ADIPOR1-201ENST00000340990 2177 ntAPPRIS P1 TSL 1 (best) BASIC27.19■■□□□ 1.94
NKX2-3Q8TAU0 NOX4-204ENST00000393282 560 ntTSL 1 (best) BASIC27.19■■□□□ 1.94
NKX2-3Q8TAU0 KCNQ3-202ENST00000519445 2801 ntAPPRIS ALT2 TSL 5 BASIC27.19■■□□□ 1.94
NKX2-3Q8TAU0 HOMER3-205ENST00000542541 1607 ntAPPRIS P3 TSL 1 (best) BASIC27.19■■□□□ 1.94
NKX2-3Q8TAU0 MSX2-201ENST00000239243 2241 ntAPPRIS P1 TSL 1 (best) BASIC27.18■■□□□ 1.94
NKX2-3Q8TAU0 GP1BB-201ENST00000366425 1553 ntAPPRIS P1 TSL 1 (best) BASIC27.18■■□□□ 1.94
NKX2-3Q8TAU0 LSM4-201ENST00000252816 986 ntTSL 2 BASIC27.18■■□□□ 1.94
NKX2-3Q8TAU0 KRAS-204ENST00000557334 1052 ntTSL 5 BASIC27.18■■□□□ 1.94
NKX2-3Q8TAU0 AC142381.2-201ENST00000566120 298 ntBASIC27.18■■□□□ 1.94
NKX2-3Q8TAU0 HNRNPUL1-222ENST00000617774 451 ntTSL 5 BASIC27.18■■□□□ 1.94
NKX2-3Q8TAU0 GALNT12-201ENST00000375011 2735 ntAPPRIS P1 TSL 1 (best) BASIC27.18■■□□□ 1.94
NKX2-3Q8TAU0 HES5-201ENST00000378453 1306 ntAPPRIS P1 TSL 1 (best) BASIC27.17■■□□□ 1.94
NKX2-3Q8TAU0 CCND3-202ENST00000372988 2133 ntTSL 1 (best) BASIC27.17■■□□□ 1.94
NKX2-3Q8TAU0 FAM220A-201ENST00000313324 2214 ntTSL 1 (best) BASIC27.17■■□□□ 1.94
NKX2-3Q8TAU0 BOP1-205ENST00000569669 2303 ntAPPRIS P1 TSL 1 (best) BASIC27.17■■□□□ 1.94
NKX2-3Q8TAU0 C1QTNF12-201ENST00000330388 1036 ntAPPRIS P1 TSL 1 (best) BASIC27.17■■□□□ 1.94
NKX2-3Q8TAU0 AC004448.1-201ENST00000458332 883 ntBASIC27.17■■□□□ 1.94
NKX2-3Q8TAU0 GADD45A-202ENST00000370986 1496 ntAPPRIS P1 TSL 1 (best) BASIC27.17■■□□□ 1.94
NKX2-3Q8TAU0 ARG2-201ENST00000261783 2045 ntAPPRIS P1 TSL 1 (best) BASIC27.16■■□□□ 1.94
NKX2-3Q8TAU0 TRIOBP-203ENST00000403663 2324 ntAPPRIS ALT2 TSL 1 (best) BASIC27.16■■□□□ 1.94
NKX2-3Q8TAU0 AC092343.1-201ENST00000500224 729 ntTSL 3 BASIC27.16■■□□□ 1.94
NKX2-3Q8TAU0 AC106739.1-201ENST00000617035 715 ntBASIC27.16■■□□□ 1.94
NKX2-3Q8TAU0 ALKAL2-204ENST00000403610 1389 ntAPPRIS P1 TSL 1 (best) BASIC27.16■■□□□ 1.94
NKX2-3Q8TAU0 TANGO2-207ENST00000420290 1859 ntTSL 2 BASIC27.16■■□□□ 1.94
NKX2-3Q8TAU0 PNLIPRP2-205ENST00000611850 1407 ntTSL 5 BASIC27.16■■□□□ 1.94
Retrieved 100 of 98,524 protein–RNA pairs in 18.9 ms