Protein–RNA interactions for Protein: Q86VR2

RETREG3, Reticulophagy regulator 3, humanhuman

Predictions only

Length 466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RETREG3Q86VR2 KCNIP2-206ENST00000356640 1989 ntTSL 1 (best) BASIC21.83■■□□□ 1.08
RETREG3Q86VR2 AC090877.2-201ENST00000558441 1738 ntBASIC21.83■■□□□ 1.08
RETREG3Q86VR2 CD37-213ENST00000598095 1598 ntTSL 2 BASIC21.82■■□□□ 1.08
RETREG3Q86VR2 CRTAC1-202ENST00000370591 2348 ntAPPRIS P2 TSL 5 BASIC21.82■■□□□ 1.08
RETREG3Q86VR2 DOK1-203ENST00000409429 1955 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
RETREG3Q86VR2 ACOT12-204ENST00000513751 612 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
RETREG3Q86VR2 PPP1R1B-201ENST00000254079 1845 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
RETREG3Q86VR2 TMEM120A-214ENST00000493111 1456 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
RETREG3Q86VR2 UBXN2A-202ENST00000404924 1557 ntAPPRIS P1 TSL 2 BASIC21.82■■□□□ 1.08
RETREG3Q86VR2 ASPSCR1-201ENST00000306729 2123 ntAPPRIS ALT2 TSL 2 BASIC21.82■■□□□ 1.08
RETREG3Q86VR2 TANGO2-207ENST00000420290 1859 ntTSL 2 BASIC21.81■■□□□ 1.08
RETREG3Q86VR2 MATK-204ENST00000585778 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC21.81■■□□□ 1.08
RETREG3Q86VR2 RHOBTB3-206ENST00000506817 1432 ntTSL 2 BASIC21.81■■□□□ 1.08
RETREG3Q86VR2 PPT2-248ENST00000395523 2111 ntAPPRIS ALT2 TSL 5 BASIC21.81■■□□□ 1.08
RETREG3Q86VR2 PSMG4-206ENST00000438998 838 ntAPPRIS P1 TSL 2 BASIC21.81■■□□□ 1.08
RETREG3Q86VR2 ARHGEF9-204ENST00000374878 2217 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
RETREG3Q86VR2 IDI1-201ENST00000381344 2301 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
RETREG3Q86VR2 LINC00565-201ENST00000562710 2331 ntBASIC21.81■■□□□ 1.08
RETREG3Q86VR2 AC009831.1-201ENST00000580420 1582 ntBASIC21.81■■□□□ 1.08
RETREG3Q86VR2 EID2B-201ENST00000326282 1865 ntAPPRIS P1 BASIC21.81■■□□□ 1.08
RETREG3Q86VR2 C6orf201-202ENST00000380175 1834 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
RETREG3Q86VR2 SRSF11-203ENST00000370951 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC21.8■■□□□ 1.08
RETREG3Q86VR2 OPRD1-202ENST00000621425 1217 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
RETREG3Q86VR2 GAS2L1-201ENST00000406549 1803 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
RETREG3Q86VR2 MRPL10-202ENST00000351111 1725 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
RETREG3Q86VR2 LRRC24-202ENST00000533758 1701 ntAPPRIS ALT2 TSL 5 BASIC21.8■■□□□ 1.08
RETREG3Q86VR2 PPP4C-201ENST00000279387 1407 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
RETREG3Q86VR2 OSCAR-201ENST00000284648 2055 ntAPPRIS ALT2 TSL 1 (best) BASIC21.79■■□□□ 1.08
RETREG3Q86VR2 KLHL36-201ENST00000258157 1974 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
RETREG3Q86VR2 MROH6-202ENST00000524906 1794 ntAPPRIS ALT2 TSL 3 BASIC21.79■■□□□ 1.08
RETREG3Q86VR2 GRM6-202ENST00000517717 2673 ntAPPRIS P1 TSL 5 BASIC21.79■■□□□ 1.08
RETREG3Q86VR2 NKIRAS2-206ENST00000393885 1909 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
RETREG3Q86VR2 H19-210ENST00000439725 1929 ntTSL 2 BASIC21.79■■□□□ 1.08
RETREG3Q86VR2 AC073188.6-202ENST00000616616 2281 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
RETREG3Q86VR2 USP36-218ENST00000590546 1771 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
RETREG3Q86VR2 HAS1-202ENST00000540069 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC21.79■■□□□ 1.08
RETREG3Q86VR2 TMEM98-202ENST00000394642 1683 ntAPPRIS P1 TSL 2 BASIC21.79■■□□□ 1.08
RETREG3Q86VR2 KCNMA1-283ENST00000640523 5425 ntAPPRIS ALT2 TSL 5 BASIC21.78■■□□□ 1.08
RETREG3Q86VR2 DENND1B-204ENST00000367396 2177 ntAPPRIS P3 TSL 1 (best) BASIC21.78■■□□□ 1.08
RETREG3Q86VR2 SEPT2-205ENST00000401990 1734 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
RETREG3Q86VR2 STEAP2-204ENST00000394626 2456 ntTSL 2 BASIC21.78■■□□□ 1.08
RETREG3Q86VR2 PTPMT1-203ENST00000426530 1014 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
RETREG3Q86VR2 RGS6-209ENST00000553525 2005 ntAPPRIS ALT1 TSL 2 BASIC21.78■■□□□ 1.08
RETREG3Q86VR2 NKX6-2-201ENST00000368592 2673 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
RETREG3Q86VR2 AF117829.1-207ENST00000504145 1572 ntTSL 3 BASIC21.78■■□□□ 1.08
RETREG3Q86VR2 EYA2-203ENST00000357410 2465 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
RETREG3Q86VR2 IFNGR2-202ENST00000381995 1742 ntAPPRIS ALT2 TSL 5 BASIC21.77■■□□□ 1.08
RETREG3Q86VR2 BARHL1-201ENST00000263610 2341 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
RETREG3Q86VR2 YPEL1-202ENST00000403503 466 ntTSL 3 BASIC21.77■■□□□ 1.08
RETREG3Q86VR2 HES4-204ENST00000484667 667 ntTSL 3 BASIC21.77■■□□□ 1.08
RETREG3Q86VR2 UBE2D2-205ENST00000505548 1113 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
RETREG3Q86VR2 CASTOR2-201ENST00000616305 1257 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
RETREG3Q86VR2 HTRA2-201ENST00000258080 2370 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
RETREG3Q86VR2 CREG1-201ENST00000370509 1974 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
RETREG3Q86VR2 RBFOX1-206ENST00000535565 1599 ntTSL 2 BASIC21.77■■□□□ 1.08
RETREG3Q86VR2 PPP2R3B-202ENST00000390665 2151 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.07
RETREG3Q86VR2 DIXDC1-205ENST00000529225 1945 ntTSL 5 BASIC21.76■■□□□ 1.07
RETREG3Q86VR2 ZYX-201ENST00000322764 2493 ntAPPRIS P2 TSL 1 (best) BASIC21.76■■□□□ 1.07
RETREG3Q86VR2 ZNF354A-201ENST00000335815 2484 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
RETREG3Q86VR2 ENDOG-201ENST00000372642 1172 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
RETREG3Q86VR2 CNPY3-201ENST00000372836 1704 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
RETREG3Q86VR2 AGO3-204ENST00000397828 1035 ntTSL 2 BASIC21.76■■□□□ 1.07
RETREG3Q86VR2 RPS2P7-201ENST00000447334 885 ntBASIC21.76■■□□□ 1.07
RETREG3Q86VR2 RNF4-207ENST00000506706 2098 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
RETREG3Q86VR2 HOMER3-201ENST00000221222 1384 ntAPPRIS ALT1 TSL 5 BASIC21.75■■□□□ 1.07
RETREG3Q86VR2 OSCAR-202ENST00000351806 1375 ntAPPRIS ALT2 TSL 1 (best) BASIC21.75■■□□□ 1.07
RETREG3Q86VR2 NEIL1-206ENST00000564784 2019 ntAPPRIS P1 TSL 2 BASIC21.75■■□□□ 1.07
RETREG3Q86VR2 CPSF4-204ENST00000436336 1738 ntAPPRIS ALT1 TSL 1 (best) BASIC21.75■■□□□ 1.07
RETREG3Q86VR2 AL161729.1-201ENST00000604104 1402 ntBASIC21.75■■□□□ 1.07
RETREG3Q86VR2 PNLIPRP2-205ENST00000611850 1407 ntTSL 5 BASIC21.75■■□□□ 1.07
RETREG3Q86VR2 WBP1-201ENST00000233615 1294 ntAPPRIS P2 TSL 1 (best) BASIC21.75■■□□□ 1.07
RETREG3Q86VR2 MOGS-202ENST00000409065 2668 ntTSL 5 BASIC21.75■■□□□ 1.07
RETREG3Q86VR2 PRKAR1B-211ENST00000537384 2533 ntAPPRIS P1 TSL 5 BASIC21.75■■□□□ 1.07
RETREG3Q86VR2 SLC35D3-201ENST00000331858 2359 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
RETREG3Q86VR2 FPGS-204ENST00000393706 2230 ntTSL 2 BASIC21.75■■□□□ 1.07
RETREG3Q86VR2 FRAT1-201ENST00000371021 2649 ntAPPRIS P1 BASIC21.75■■□□□ 1.07
RETREG3Q86VR2 RALB-201ENST00000272519 2344 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
RETREG3Q86VR2 GPX1-201ENST00000419349 1106 ntBASIC21.74■■□□□ 1.07
RETREG3Q86VR2 AC133552.2-201ENST00000619106 1032 ntBASIC21.74■■□□□ 1.07
RETREG3Q86VR2 CIDEB-201ENST00000258807 2294 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
RETREG3Q86VR2 FAM83D-202ENST00000619850 2361 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
RETREG3Q86VR2 FAM136A-201ENST00000037869 1810 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
RETREG3Q86VR2 OLIG1-201ENST00000382348 2277 ntAPPRIS P1 BASIC21.73■■□□□ 1.07
RETREG3Q86VR2 TMEM235-205ENST00000586400 2272 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
RETREG3Q86VR2 PSIP1-202ENST00000380716 1889 ntTSL 5 BASIC21.73■■□□□ 1.07
RETREG3Q86VR2 MAPK3-203ENST00000395199 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC21.73■■□□□ 1.07
RETREG3Q86VR2 MAPK3-205ENST00000395202 1008 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
RETREG3Q86VR2 TSPY4-202ENST00000426950 1179 ntAPPRIS P5 TSL 5 BASIC21.73■■□□□ 1.07
RETREG3Q86VR2 HES4-202ENST00000428771 1040 ntTSL 2 BASIC21.73■■□□□ 1.07
RETREG3Q86VR2 FAM136A-202ENST00000430566 885 ntTSL 3 BASIC21.73■■□□□ 1.07
RETREG3Q86VR2 NKX2-5-204ENST00000521848 1027 ntTSL 2 BASIC21.73■■□□□ 1.07
RETREG3Q86VR2 MANF-204ENST00000528157 1153 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
RETREG3Q86VR2 CAPNS1-211ENST00000590874 926 ntTSL 5 BASIC21.73■■□□□ 1.07
RETREG3Q86VR2 LTK-202ENST00000355166 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC21.73■■□□□ 1.07
RETREG3Q86VR2 SRI-201ENST00000265729 2010 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
RETREG3Q86VR2 C14orf80-204ENST00000392522 1630 ntAPPRIS P4 TSL 5 BASIC21.73■■□□□ 1.07
RETREG3Q86VR2 HES6-201ENST00000272937 1454 ntAPPRIS P3 TSL 1 (best) BASIC21.72■■□□□ 1.07
RETREG3Q86VR2 CCDC24-201ENST00000372318 1463 ntAPPRIS P2 TSL 1 (best) BASIC21.72■■□□□ 1.07
RETREG3Q86VR2 TMUB1-203ENST00000462940 1549 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
RETREG3Q86VR2 IKZF1-207ENST00000413698 1808 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
Retrieved 100 of 98,524 protein–RNA pairs in 39.9 ms