Protein–RNA interactions for Protein: P98160

HSPG2, Basement membrane-specific heparan sulfate proteoglycan core protein, humanhuman

Predictions only

Length 4,391 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HSPG2P98160 VEGFC-202ENST00000618562 2064 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
HSPG2P98160 TTLL1-201ENST00000266254 1645 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
HSPG2P98160 EVA1C-203ENST00000401402 1558 ntTSL 5 BASIC14.49□□□□□ -0.09
HSPG2P98160 PCSK1N-201ENST00000218230 1050 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
HSPG2P98160 IL15RA-208ENST00000397251 1046 ntAPPRIS ALT2 TSL 1 (best) BASIC14.49□□□□□ -0.09
HSPG2P98160 IL15RA-215ENST00000528354 1037 ntTSL 2 BASIC14.49□□□□□ -0.09
HSPG2P98160 IL15RA-220ENST00000620345 1115 ntAPPRIS ALT2 TSL 1 (best) BASIC14.49□□□□□ -0.09
HSPG2P98160 IL15RA-221ENST00000620865 1037 ntAPPRIS ALT2 TSL 1 (best) BASIC14.49□□□□□ -0.09
HSPG2P98160 IL15RA-222ENST00000622442 1160 ntAPPRIS ALT2 TSL 1 (best) BASIC14.49□□□□□ -0.09
HSPG2P98160 BMP8A-201ENST00000331593 1692 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
HSPG2P98160 TMEM203-201ENST00000343666 1557 ntAPPRIS P1 BASIC14.49□□□□□ -0.09
HSPG2P98160 PRKCQ-AS1-204ENST00000455810 920 ntTSL 2 BASIC14.48□□□□□ -0.09
HSPG2P98160 YIF1A-205ENST00000471387 854 ntTSL 5 BASIC14.48□□□□□ -0.09
HSPG2P98160 DRD5P2-201ENST00000421395 2012 ntBASIC14.48□□□□□ -0.09
HSPG2P98160 CUL4A-202ENST00000375440 2364 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
HSPG2P98160 CITED1-201ENST00000246139 1231 ntAPPRIS P3 TSL 1 (best) BASIC14.48□□□□□ -0.09
HSPG2P98160 PHLDA3-201ENST00000367309 896 ntAPPRIS P1 TSL 5 BASIC14.48□□□□□ -0.09
HSPG2P98160 ARFIP2-205ENST00000525235 852 ntTSL 2 BASIC14.48□□□□□ -0.09
HSPG2P98160 NFKBIB-201ENST00000313582 1159 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
HSPG2P98160 FMR1-202ENST00000334557 1295 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
HSPG2P98160 AL161908.1-203ENST00000425370 506 ntTSL 2 BASIC14.48□□□□□ -0.09
HSPG2P98160 PLPP2-202ENST00000327790 1397 ntTSL 5 BASIC14.48□□□□□ -0.09
HSPG2P98160 HOMER3-205ENST00000542541 1607 ntAPPRIS P3 TSL 1 (best) BASIC14.48□□□□□ -0.09
HSPG2P98160 C20orf144-201ENST00000375222 571 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
HSPG2P98160 TMEM182-210ENST00000639249 1025 ntTSL 5 BASIC14.48□□□□□ -0.09
HSPG2P98160 RCCD1-203ENST00000555155 1871 ntAPPRIS ALT1 TSL 5 BASIC14.47□□□□□ -0.09
HSPG2P98160 ABCB10P1-201ENST00000614297 2181 ntBASIC14.47□□□□□ -0.09
HSPG2P98160 EXOG-203ENST00000422077 1317 ntTSL 2 BASIC14.47□□□□□ -0.09
HSPG2P98160 MADCAM1-205ENST00000613880 1509 ntAPPRIS ALT2 TSL 5 BASIC14.47□□□□□ -0.09
HSPG2P98160 NEDD8-201ENST00000250495 708 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
HSPG2P98160 SCN1B-206ENST00000638536 1600 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
HSPG2P98160 NRM-201ENST00000259953 1755 ntAPPRIS P2 TSL 2 BASIC14.47□□□□□ -0.09
HSPG2P98160 WDR86-203ENST00000469830 1691 ntTSL 2 BASIC14.47□□□□□ -0.09
HSPG2P98160 AMZ2-219ENST00000612294 1498 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
HSPG2P98160 OLFM1-206ENST00000371799 961 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
HSPG2P98160 AC019068.1-201ENST00000415226 552 ntTSL 4 BASIC14.47□□□□□ -0.09
HSPG2P98160 EPDR1-202ENST00000423717 638 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
HSPG2P98160 DDN-AS1-201ENST00000547395 858 ntTSL 2 BASIC14.47□□□□□ -0.09
HSPG2P98160 EIF3J-202ENST00000424492 1550 ntTSL 4 BASIC14.47□□□□□ -0.09
HSPG2P98160 PDPK1-203ENST00000389224 2416 ntTSL 2 BASIC14.47□□□□□ -0.09
HSPG2P98160 TCTEX1D4-201ENST00000339355 763 ntAPPRIS P1 BASIC14.47□□□□□ -0.09
HSPG2P98160 PLAC9-202ENST00000372267 472 ntAPPRIS ALT2 TSL 3 BASIC14.47□□□□□ -0.09
HSPG2P98160 PCP4L1-201ENST00000504449 1424 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
HSPG2P98160 HAS1-203ENST00000594621 760 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
HSPG2P98160 TRAPPC5-203ENST00000595985 411 ntTSL 3 BASIC14.47□□□□□ -0.09
HSPG2P98160 CD24-202ENST00000610952 802 ntAPPRIS P3 TSL 2 BASIC14.47□□□□□ -0.09
HSPG2P98160 AC093627.4-202ENST00000479592 591 ntTSL 4 BASIC14.46□□□□□ -0.09
HSPG2P98160 SLC25A29-212ENST00000555927 960 ntTSL 2 BASIC14.46□□□□□ -0.09
HSPG2P98160 MIR6084-201ENST00000622012 110 ntBASIC14.46□□□□□ -0.09
HSPG2P98160 HSPBP1-201ENST00000255631 1768 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
HSPG2P98160 ABHD17C-202ENST00000558464 1976 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
HSPG2P98160 MME-202ENST00000382989 1319 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
HSPG2P98160 STX7-201ENST00000367937 1090 ntTSL 5 BASIC14.46□□□□□ -0.09
HSPG2P98160 GADD45A-202ENST00000370986 1496 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
HSPG2P98160 PPP1R14BP3-201ENST00000509033 445 ntBASIC14.46□□□□□ -0.09
HSPG2P98160 IDH2-203ENST00000559482 1278 ntTSL 5 BASIC14.46□□□□□ -0.09
HSPG2P98160 NDUFA6-AS1-207ENST00000595777 833 ntTSL 5 BASIC14.46□□□□□ -0.09
HSPG2P98160 TALDO1-201ENST00000319006 1346 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.1
HSPG2P98160 EMC10-202ENST00000376918 2014 ntAPPRIS ALT2 TSL 1 (best) BASIC14.46□□□□□ -0.1
HSPG2P98160 AL109923.1-201ENST00000618799 583 ntBASIC14.45□□□□□ -0.1
HSPG2P98160 UBAP1L-203ENST00000559089 1694 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
HSPG2P98160 AL353743.1-201ENST00000637846 1769 ntTSL 5 BASIC14.45□□□□□ -0.1
HSPG2P98160 HES6-206ENST00000409574 738 ntTSL 2 BASIC14.45□□□□□ -0.1
HSPG2P98160 RNASEH2B-206ENST00000611510 1257 ntTSL 5 BASIC14.45□□□□□ -0.1
HSPG2P98160 ENTPD5-206ENST00000556242 1437 ntTSL 5 BASIC14.45□□□□□ -0.1
HSPG2P98160 PEX11G-203ENST00000593942 1345 ntTSL 5 BASIC14.45□□□□□ -0.1
HSPG2P98160 CD6-206ENST00000452451 1782 ntAPPRIS ALT2 TSL 1 (best) BASIC14.45□□□□□ -0.1
HSPG2P98160 SLC35A3-213ENST00000638988 1286 ntTSL 5 BASIC14.45□□□□□ -0.1
HSPG2P98160 ZNF503-AS2-202ENST00000466942 1430 ntTSL 2 BASIC14.45□□□□□ -0.1
HSPG2P98160 GLI4-201ENST00000340042 1341 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
HSPG2P98160 TMUB1-202ENST00000392818 1563 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
HSPG2P98160 AMH-201ENST00000221496 1821 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
HSPG2P98160 PDXDC2P-202ENST00000527016 543 ntTSL 3 BASIC14.45□□□□□ -0.1
HSPG2P98160 AC012414.1-201ENST00000556676 535 ntBASIC14.45□□□□□ -0.1
HSPG2P98160 MIR4651-201ENST00000582622 73 ntBASIC14.45□□□□□ -0.1
HSPG2P98160 PYCARD-201ENST00000247470 990 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
HSPG2P98160 HSD17B14-201ENST00000263278 1238 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
HSPG2P98160 NME4-202ENST00000382940 766 ntTSL 3 BASIC14.44□□□□□ -0.1
HSPG2P98160 PIGP-203ENST00000399098 972 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
HSPG2P98160 COX4I1-216ENST00000568794 794 ntTSL 5 BASIC14.44□□□□□ -0.1
HSPG2P98160 NME4-211ENST00000620944 1193 ntTSL 2 BASIC14.44□□□□□ -0.1
HSPG2P98160 UBE2D3-201ENST00000321805 1087 ntAPPRIS ALT1 TSL 5 BASIC14.44□□□□□ -0.1
HSPG2P98160 STOML2-202ENST00000452248 1296 ntTSL 2 BASIC14.44□□□□□ -0.1
HSPG2P98160 AC068385.1-201ENST00000533218 409 ntTSL 3 BASIC14.44□□□□□ -0.1
HSPG2P98160 STOML2-205ENST00000619795 1293 ntTSL 3 BASIC14.44□□□□□ -0.1
HSPG2P98160 POLR2E-214ENST00000619917 932 ntTSL 5 BASIC14.44□□□□□ -0.1
HSPG2P98160 ST7L-221ENST00000490067 1780 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
HSPG2P98160 RCC1L-202ENST00000614461 2419 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
HSPG2P98160 MATK-202ENST00000395040 1907 ntAPPRIS ALT2 TSL 1 (best) BASIC14.44□□□□□ -0.1
HSPG2P98160 HOMER2-202ENST00000450735 1950 ntAPPRIS ALT2 TSL 1 (best) BASIC14.44□□□□□ -0.1
HSPG2P98160 EVC-203ENST00000509451 1960 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
HSPG2P98160 TIMM50-201ENST00000314349 1612 ntAPPRIS P2 TSL 1 (best) BASIC14.44□□□□□ -0.1
HSPG2P98160 IL15RA-207ENST00000397250 584 ntTSL 2 BASIC14.44□□□□□ -0.1
HSPG2P98160 LGI4-206ENST00000591633 1113 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
HSPG2P98160 AC012123.1-201ENST00000426194 1661 ntTSL 5 BASIC14.43□□□□□ -0.1
HSPG2P98160 LINC02091-201ENST00000576171 1185 ntTSL 5 BASIC14.43□□□□□ -0.1
HSPG2P98160 SNUPN-207ENST00000567134 1641 ntAPPRIS P1 TSL 5 BASIC14.43□□□□□ -0.1
HSPG2P98160 TRADD-201ENST00000345057 1877 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
HSPG2P98160 DCXR-201ENST00000306869 887 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
HSPG2P98160 BBC3-204ENST00000449228 1827 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
Retrieved 100 of 98,524 protein–RNA pairs in 14.1 ms