Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 AC005775.1-201ENST00000592413 850 ntTSL 5 BASIC32.23■■■□□ 2.75
MSH6P52701 C19orf12-204ENST00000392276 1912 ntTSL 1 (best) BASIC32.23■■■□□ 2.75
MSH6P52701 C14orf80-206ENST00000392527 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC32.23■■■□□ 2.75
MSH6P52701 LINC00454-202ENST00000430978 1327 ntTSL 5 BASIC32.23■■■□□ 2.75
MSH6P52701 CDIPT-210ENST00000570016 1346 ntAPPRIS P1 TSL 5 BASIC32.23■■■□□ 2.75
MSH6P52701 YWHAH-201ENST00000248975 1825 ntAPPRIS P1 TSL 1 (best) BASIC32.23■■■□□ 2.75
MSH6P52701 PORCN-202ENST00000355961 1848 ntAPPRIS ALT1 TSL 1 (best) BASIC32.23■■■□□ 2.75
MSH6P52701 SHOX2-201ENST00000389589 2072 ntAPPRIS P3 TSL 1 (best) BASIC32.23■■■□□ 2.75
MSH6P52701 SNAI3-AS1-201ENST00000563261 998 ntTSL 1 (best) BASIC32.22■■■□□ 2.75
MSH6P52701 HDHD5-202ENST00000336737 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC32.22■■■□□ 2.75
MSH6P52701 ACTR3B-201ENST00000256001 2216 ntAPPRIS P1 TSL 1 (best) BASIC32.22■■■□□ 2.75
MSH6P52701 MPV17L-202ENST00000396385 1037 ntAPPRIS P1 TSL 1 (best) BASIC32.21■■■□□ 2.75
MSH6P52701 GXYLT1P2-201ENST00000433312 1230 ntBASIC32.21■■■□□ 2.75
MSH6P52701 AC093817.1-201ENST00000507296 812 ntTSL 3 BASIC32.21■■■□□ 2.75
MSH6P52701 GLI4-210ENST00000523522 1297 ntAPPRIS P1 TSL 1 (best) BASIC32.21■■■□□ 2.75
MSH6P52701 AC126544.1-201ENST00000580842 1059 ntBASIC32.21■■■□□ 2.75
MSH6P52701 AL358852.1-201ENST00000623174 1268 ntBASIC32.21■■■□□ 2.75
MSH6P52701 DISC1-224ENST00000639374 1071 ntAPPRIS ALT2 TSL 1 (best) BASIC32.21■■■□□ 2.75
MSH6P52701 TST-202ENST00000403892 1797 ntAPPRIS P1 TSL 1 (best) BASIC32.2■■■□□ 2.75
MSH6P52701 C20orf144-201ENST00000375222 571 ntAPPRIS P1 TSL 1 (best) BASIC32.2■■■□□ 2.75
MSH6P52701 SNHG12-212ENST00000531126 719 ntTSL 1 (best) BASIC32.2■■■□□ 2.75
MSH6P52701 MIR3181-201ENST00000578512 73 ntBASIC32.2■■■□□ 2.75
MSH6P52701 AL831711.1-201ENST00000636824 569 ntTSL 4 BASIC32.2■■■□□ 2.75
MSH6P52701 TSPY26P-201ENST00000476365 1326 ntBASIC32.2■■■□□ 2.75
MSH6P52701 RCCD1-203ENST00000555155 1871 ntAPPRIS ALT1 TSL 5 BASIC32.2■■■□□ 2.75
MSH6P52701 SESN3-202ENST00000416495 1408 ntTSL 1 (best) BASIC32.2■■■□□ 2.75
MSH6P52701 MNX1-201ENST00000252971 2174 ntAPPRIS P3 TSL 1 (best) BASIC32.2■■■□□ 2.74
MSH6P52701 JARID2-AS1-201ENST00000441978 455 ntTSL 1 (best) BASIC32.19■■■□□ 2.74
MSH6P52701 APLP1-201ENST00000221891 2495 ntAPPRIS P1 TSL 1 (best) BASIC32.19■■■□□ 2.74
MSH6P52701 CDCP1-202ENST00000425231 1416 ntAPPRIS ALT2 TSL 1 (best) BASIC32.18■■■□□ 2.74
MSH6P52701 HNRNPAB-201ENST00000355836 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC32.18■■■□□ 2.74
MSH6P52701 TAF9-201ENST00000217893 1283 ntAPPRIS P2 TSL 1 (best) BASIC32.18■■■□□ 2.74
MSH6P52701 AL136090.1-201ENST00000446849 366 ntTSL 3 BASIC32.18■■■□□ 2.74
MSH6P52701 AC009086.3-201ENST00000623486 1008 ntBASIC32.18■■■□□ 2.74
MSH6P52701 ANKRD53-204ENST00000457410 1671 ntTSL 5 BASIC32.17■■■□□ 2.74
MSH6P52701 SMARCD3-203ENST00000392811 2018 ntTSL 1 (best) BASIC32.17■■■□□ 2.74
MSH6P52701 FZD2-201ENST00000315323 2112 ntAPPRIS P1 BASIC32.17■■■□□ 2.74
MSH6P52701 IGHV3-20-201ENST00000390606 415 ntAPPRIS P1 BASIC32.17■■■□□ 2.74
MSH6P52701 CNPY3-202ENST00000394142 954 ntTSL 5 BASIC32.17■■■□□ 2.74
MSH6P52701 TSEN15-207ENST00000533373 618 ntTSL 2 BASIC32.17■■■□□ 2.74
MSH6P52701 LRRC37A17P-202ENST00000570478 572 ntTSL 4 BASIC32.17■■■□□ 2.74
MSH6P52701 LTB4R2-205ENST00000543919 1560 ntAPPRIS P1 TSL 1 (best) BASIC32.17■■■□□ 2.74
MSH6P52701 ATP6V0A2-209ENST00000613625 1620 ntTSL 1 (best) BASIC32.17■■■□□ 2.74
MSH6P52701 GTF2E2-201ENST00000355904 1762 ntAPPRIS P1 TSL 1 (best) BASIC32.16■■■□□ 2.74
MSH6P52701 ME3-201ENST00000323418 1068 ntTSL 5 BASIC32.16■■■□□ 2.74
MSH6P52701 AP1S1-201ENST00000337619 1306 ntAPPRIS P1 TSL 1 (best) BASIC32.16■■■□□ 2.74
MSH6P52701 PRDX4-202ENST00000379341 1005 ntAPPRIS P1 TSL 1 (best) BASIC32.16■■■□□ 2.74
MSH6P52701 AC019068.1-201ENST00000415226 552 ntTSL 4 BASIC32.16■■■□□ 2.74
MSH6P52701 ITGA9-203ENST00000422441 2282 ntTSL 1 (best) BASIC32.16■■■□□ 2.74
MSH6P52701 CCDC92B-201ENST00000575506 885 ntBASIC32.16■■■□□ 2.74
MSH6P52701 MADCAM1-205ENST00000613880 1509 ntAPPRIS ALT2 TSL 5 BASIC32.16■■■□□ 2.74
MSH6P52701 HSD11B1L-203ENST00000342970 1620 ntTSL 1 (best) BASIC32.15■■■□□ 2.74
MSH6P52701 SLC16A3-214ENST00000582743 2002 ntAPPRIS P1 TSL 1 (best) BASIC32.15■■■□□ 2.74
MSH6P52701 FBXL6-202ENST00000455319 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC32.14■■■□□ 2.74
MSH6P52701 AC131274.2-201ENST00000580697 1507 ntBASIC32.14■■■□□ 2.74
MSH6P52701 IL15RA-201ENST00000379971 588 ntTSL 3 BASIC32.14■■■□□ 2.74
MSH6P52701 AC006538.2-201ENST00000586572 543 ntAPPRIS P1 TSL 4 BASIC32.14■■■□□ 2.74
MSH6P52701 CEND1-201ENST00000330106 1649 ntAPPRIS P1 TSL 1 (best) BASIC32.14■■■□□ 2.73
MSH6P52701 RUNDC3A-201ENST00000225441 1821 ntTSL 1 (best) BASIC32.13■■■□□ 2.73
MSH6P52701 GPR75-ASB3-201ENST00000406625 2113 ntAPPRIS P1 TSL 2 BASIC32.13■■■□□ 2.73
MSH6P52701 ZNF653-201ENST00000293771 2240 ntAPPRIS P1 TSL 1 (best) BASIC32.13■■■□□ 2.73
MSH6P52701 PCP4L1-201ENST00000504449 1424 ntAPPRIS P1 TSL 1 (best) BASIC32.12■■■□□ 2.73
MSH6P52701 PYCARD-201ENST00000247470 990 ntAPPRIS P1 TSL 1 (best) BASIC32.12■■■□□ 2.73
MSH6P52701 SMCO4-201ENST00000298966 1104 ntAPPRIS P1 TSL 1 (best) BASIC32.12■■■□□ 2.73
MSH6P52701 MIR6084-201ENST00000622012 110 ntBASIC32.12■■■□□ 2.73
MSH6P52701 DCAF8-211ENST00000475733 1426 ntTSL 1 (best) BASIC32.12■■■□□ 2.73
MSH6P52701 HSPBP1-206ENST00000587922 1449 ntAPPRIS P1 TSL 1 (best) BASIC32.12■■■□□ 2.73
MSH6P52701 HOXB7-201ENST00000239165 1371 ntAPPRIS P1 TSL 1 (best) BASIC32.11■■■□□ 2.73
MSH6P52701 C14orf80-204ENST00000392522 1630 ntAPPRIS P4 TSL 5 BASIC32.11■■■□□ 2.73
MSH6P52701 PITX1-205ENST00000506438 1305 ntAPPRIS P1 TSL 1 (best) BASIC32.11■■■□□ 2.73
MSH6P52701 TSPAN10-203ENST00000574882 1837 ntAPPRIS P2 TSL 1 (best) BASIC32.11■■■□□ 2.73
MSH6P52701 AL691442.1-201ENST00000505139 1042 ntAPPRIS P1 TSL 2 BASIC32.11■■■□□ 2.73
MSH6P52701 AICDA-202ENST00000537228 667 ntTSL 5 BASIC32.11■■■□□ 2.73
MSH6P52701 NTF6G-201ENST00000591094 616 ntBASIC32.11■■■□□ 2.73
MSH6P52701 MADCAM1-208ENST00000621286 1203 ntAPPRIS ALT2 TSL 5 BASIC32.11■■■□□ 2.73
MSH6P52701 SERPING1-205ENST00000403558 2231 ntTSL 5 BASIC32.1■■■□□ 2.73
MSH6P52701 MATK-204ENST00000585778 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC32.1■■■□□ 2.73
MSH6P52701 HIST2H2AC-201ENST00000331380 390 ntAPPRIS P1 BASIC32.1■■■□□ 2.73
MSH6P52701 CRB3-202ENST00000356762 733 ntAPPRIS P4 TSL 1 (best) BASIC32.1■■■□□ 2.73
MSH6P52701 AP003419.1-201ENST00000535922 470 ntTSL 3 BASIC32.1■■■□□ 2.73
MSH6P52701 AC012414.1-201ENST00000556676 535 ntBASIC32.1■■■□□ 2.73
MSH6P52701 ESRRAP2-201ENST00000418437 1549 ntBASIC32.1■■■□□ 2.73
MSH6P52701 ZNHIT2-201ENST00000310597 1306 ntAPPRIS P1 BASIC32.1■■■□□ 2.73
MSH6P52701 KCNJ4-201ENST00000303592 2065 ntAPPRIS P1 TSL 1 (best) BASIC32.1■■■□□ 2.73
MSH6P52701 TLX3-201ENST00000296921 1493 ntAPPRIS P1 TSL 1 (best) BASIC32.09■■■□□ 2.73
MSH6P52701 ABHD16B-201ENST00000369916 1491 ntAPPRIS P1 BASIC32.09■■■□□ 2.73
MSH6P52701 SLC35A2-205ENST00000376529 865 ntTSL 3 BASIC32.09■■■□□ 2.73
MSH6P52701 ZEB1-AS1-201ENST00000423714 456 ntTSL 3 BASIC32.09■■■□□ 2.73
MSH6P52701 TTBK2-205ENST00000567274 1777 ntTSL 5 BASIC32.09■■■□□ 2.73
MSH6P52701 FAR2P4-203ENST00000560285 1739 ntTSL 2 BASIC32.09■■■□□ 2.73
MSH6P52701 SLC25A1-201ENST00000215882 1648 ntAPPRIS P1 TSL 1 (best) BASIC32.09■■■□□ 2.73
MSH6P52701 ABHD17AP1-201ENST00000358206 933 ntBASIC32.08■■■□□ 2.73
MSH6P52701 TK2-208ENST00000545043 1120 ntTSL 2 BASIC32.08■■■□□ 2.73
MSH6P52701 TRAF4-205ENST00000444415 1456 ntTSL 5 BASIC32.08■■■□□ 2.73
MSH6P52701 SEPT5-201ENST00000383045 1588 ntTSL 5 BASIC32.08■■■□□ 2.73
MSH6P52701 CAMKMT-202ENST00000402247 665 ntTSL 2 BASIC32.07■■■□□ 2.73
MSH6P52701 CBWD2-203ENST00000416503 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC32.07■■■□□ 2.72
MSH6P52701 CD63-202ENST00000420846 981 ntAPPRIS P1 TSL 5 BASIC32.07■■■□□ 2.72
MSH6P52701 FGF12-AS2-201ENST00000443165 580 ntTSL 4 BASIC32.07■■■□□ 2.72
MSH6P52701 PLSCR3-209ENST00000574401 2032 ntAPPRIS P1 TSL 1 (best) BASIC32.06■■■□□ 2.72
Retrieved 100 of 98,524 protein–RNA pairs in 12 ms