Protein–RNA interactions for Protein: P22223

CDH3, Cadherin-3, humanhuman

Predictions only

Length 829 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3P22223 PCOLCE2-201ENST00000295992 2021 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
CDH3P22223 TRIM54-201ENST00000296098 2027 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
CDH3P22223 SLC35B2-202ENST00000393812 2043 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
CDH3P22223 VDAC2-203ENST00000332211 1557 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
CDH3P22223 C14orf80-204ENST00000392522 1630 ntAPPRIS P4 TSL 5 BASIC22.28■■□□□ 1.16
CDH3P22223 SNX5-217ENST00000606557 1087 ntBASIC22.28■■□□□ 1.16
CDH3P22223 SPIRE2-205ENST00000563972 1823 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
CDH3P22223 AGBL5-201ENST00000323064 2382 ntAPPRIS ALT2 TSL 1 (best) BASIC22.28■■□□□ 1.16
CDH3P22223 LHX3-201ENST00000371746 2403 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
CDH3P22223 SCTR-201ENST00000019103 1865 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
CDH3P22223 PELI3-201ENST00000320740 2740 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
CDH3P22223 RFNG-201ENST00000310496 1828 ntAPPRIS P1 TSL 2 BASIC22.27■■□□□ 1.16
CDH3P22223 TMEM150C-201ENST00000449862 1990 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
CDH3P22223 PFKFB4-204ENST00000416568 1575 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
CDH3P22223 MIR6724-1-201ENST00000616420 92 ntBASIC22.27■■□□□ 1.16
CDH3P22223 MIR6724-2-201ENST00000616483 92 ntBASIC22.27■■□□□ 1.16
CDH3P22223 MIR6724-4-201ENST00000617390 92 ntBASIC22.27■■□□□ 1.16
CDH3P22223 MIR6724-3-201ENST00000622482 92 ntBASIC22.27■■□□□ 1.16
CDH3P22223 EXOG-217ENST00000630638 197 ntTSL 5 BASIC22.27■■□□□ 1.16
CDH3P22223 ATG16L2-201ENST00000321297 2243 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
CDH3P22223 FEZ2-203ENST00000379245 2097 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
CDH3P22223 HOMER3-205ENST00000542541 1607 ntAPPRIS P3 TSL 1 (best) BASIC22.27■■□□□ 1.16
CDH3P22223 CNN3-202ENST00000394202 1974 ntTSL 2 BASIC22.27■■□□□ 1.15
CDH3P22223 FPGS-221ENST00000630236 2160 ntTSL 5 BASIC22.26■■□□□ 1.15
CDH3P22223 C7orf25-205ENST00000438029 1743 ntAPPRIS P1 TSL 2 BASIC22.26■■□□□ 1.15
CDH3P22223 HNRNPAB-208ENST00000515193 1595 ntAPPRIS ALT2 TSL 5 BASIC22.26■■□□□ 1.15
CDH3P22223 CBLN2-209ENST00000585159 2406 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
CDH3P22223 FAM124A-201ENST00000280057 2104 ntTSL 2 BASIC22.26■■□□□ 1.15
CDH3P22223 CD63-202ENST00000420846 981 ntAPPRIS P1 TSL 5 BASIC22.26■■□□□ 1.15
CDH3P22223 COMMD5-201ENST00000305103 1373 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
CDH3P22223 STEAP2-207ENST00000402625 1372 ntTSL 5 BASIC22.25■■□□□ 1.15
CDH3P22223 ZNF598-202ENST00000562103 2717 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
CDH3P22223 MRPS7-203ENST00000579002 1638 ntTSL 2 BASIC22.25■■□□□ 1.15
CDH3P22223 LSM4-201ENST00000252816 986 ntTSL 2 BASIC22.25■■□□□ 1.15
CDH3P22223 CCER2-201ENST00000571838 1057 ntAPPRIS P2 TSL 5 BASIC22.25■■□□□ 1.15
CDH3P22223 CRLF1-201ENST00000392386 1792 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
CDH3P22223 SNX21-204ENST00000372542 1824 ntAPPRIS P1 TSL 2 BASIC22.24■■□□□ 1.15
CDH3P22223 SNF8-202ENST00000502492 2319 ntAPPRIS P3 TSL 1 (best) BASIC22.24■■□□□ 1.15
CDH3P22223 SUSD3-202ENST00000375472 1195 ntAPPRIS P3 TSL 1 (best) BASIC22.24■■□□□ 1.15
CDH3P22223 AC073934.1-201ENST00000490314 495 ntTSL 4 BASIC22.24■■□□□ 1.15
CDH3P22223 TSPAN17-204ENST00000503045 1019 ntTSL 5 BASIC22.24■■□□□ 1.15
CDH3P22223 SLC52A2-202ENST00000402965 1777 ntAPPRIS P1 TSL 2 BASIC22.24■■□□□ 1.15
CDH3P22223 FGF22-201ENST00000215530 1311 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
CDH3P22223 AC079834.2-201ENST00000609776 1949 ntBASIC22.23■■□□□ 1.15
CDH3P22223 DNAJB11-201ENST00000265028 1688 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
CDH3P22223 AC012123.1-201ENST00000426194 1661 ntTSL 5 BASIC22.23■■□□□ 1.15
CDH3P22223 IKBKG-211ENST00000615874 1460 ntTSL 5 BASIC22.23■■□□□ 1.15
CDH3P22223 IKBKG-215ENST00000619941 1463 ntTSL 5 BASIC22.23■■□□□ 1.15
CDH3P22223 PTPRM-201ENST00000332175 6095 ntAPPRIS P3 TSL 1 (best) BASIC22.23■■□□□ 1.15
CDH3P22223 PEMT-201ENST00000255389 1013 ntTSL 1 (best) BASIC22.23■■□□□ 1.15
CDH3P22223 RAB33A-201ENST00000257017 1258 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
CDH3P22223 CD72-202ENST00000378430 585 ntTSL 3 BASIC22.23■■□□□ 1.15
CDH3P22223 SUMF1-205ENST00000458465 1102 ntTSL 2 BASIC22.23■■□□□ 1.15
CDH3P22223 TMEM165-204ENST00000506198 828 ntTSL 2 BASIC22.23■■□□□ 1.15
CDH3P22223 SLC16A10-206ENST00000612036 1231 ntTSL 5 BASIC22.23■■□□□ 1.15
CDH3P22223 TMEM51-205ENST00000434578 1861 ntTSL 1 (best) BASIC22.23■■□□□ 1.15
CDH3P22223 AC022211.4-201ENST00000625094 2161 ntBASIC22.23■■□□□ 1.15
CDH3P22223 BTBD6-201ENST00000327471 1948 ntAPPRIS ALT2 TSL 2 BASIC22.23■■□□□ 1.15
CDH3P22223 PCSK6-220ENST00000622483 3132 ntAPPRIS ALT2 TSL 1 (best) BASIC22.23■■□□□ 1.15
CDH3P22223 C8orf58-201ENST00000289989 2016 ntAPPRIS P3 TSL 5 BASIC22.23■■□□□ 1.15
CDH3P22223 AKT1S1-203ENST00000391831 2025 ntAPPRIS P1 TSL 2 BASIC22.23■■□□□ 1.15
CDH3P22223 BIN1-206ENST00000352848 2209 ntTSL 1 (best) BASIC22.22■■□□□ 1.15
CDH3P22223 PNCK-215ENST00000447676 1585 ntTSL 2 BASIC22.22■■□□□ 1.15
CDH3P22223 CSNK1G3-207ENST00000512718 1569 ntTSL 2 BASIC22.22■■□□□ 1.15
CDH3P22223 SLBP-206ENST00000489418 1977 ntAPPRIS P2 TSL 1 (best) BASIC22.22■■□□□ 1.15
CDH3P22223 TMEM240-203ENST00000624426 796 ntTSL 3 BASIC22.22■■□□□ 1.15
CDH3P22223 TMEM221-201ENST00000341130 1930 ntAPPRIS P1 TSL 2 BASIC22.21■■□□□ 1.15
CDH3P22223 ATP5A1-220ENST00000593152 2258 ntTSL 2 BASIC22.21■■□□□ 1.15
CDH3P22223 DNAJC4-202ENST00000321685 1288 ntAPPRIS P3 TSL 1 (best) BASIC22.21■■□□□ 1.15
CDH3P22223 AC004448.1-201ENST00000458332 883 ntBASIC22.21■■□□□ 1.15
CDH3P22223 ZNF419-210ENST00000520540 568 ntTSL 4 BASIC22.21■■□□□ 1.15
CDH3P22223 PLEKHJ1-213ENST00000591099 1092 ntTSL 2 BASIC22.21■■□□□ 1.15
CDH3P22223 MIR6722-201ENST00000617286 78 ntBASIC22.21■■□□□ 1.15
CDH3P22223 DNAJC4-212ENST00000628077 938 ntTSL 5 BASIC22.21■■□□□ 1.15
CDH3P22223 AC008406.3-201ENST00000620001 1374 ntBASIC22.21■■□□□ 1.15
CDH3P22223 ST3GAL5-231ENST00000639119 2131 ntTSL 5 BASIC22.21■■□□□ 1.15
CDH3P22223 FBXW4-201ENST00000331272 2483 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
CDH3P22223 PEX5-205ENST00000420616 2477 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
CDH3P22223 PXK-201ENST00000302779 1974 ntTSL 1 (best) BASIC22.2■■□□□ 1.14
CDH3P22223 ZNF503-AS2-201ENST00000425916 2026 ntTSL 1 (best) BASIC22.2■■□□□ 1.14
CDH3P22223 SPAG16-201ENST00000272898 1059 ntTSL 5 BASIC22.2■■□□□ 1.14
CDH3P22223 TRIM7-202ENST00000334421 1228 ntTSL 1 (best) BASIC22.2■■□□□ 1.14
CDH3P22223 STK32C-205ENST00000456004 607 ntTSL 2 BASIC22.2■■□□□ 1.14
CDH3P22223 SRR-208ENST00000576848 588 ntTSL 4 BASIC22.2■■□□□ 1.14
CDH3P22223 AL117332.1-201ENST00000622628 974 ntBASIC22.2■■□□□ 1.14
CDH3P22223 ARHGEF9-210ENST00000623517 2143 ntTSL 2 BASIC22.2■■□□□ 1.14
CDH3P22223 AUH-201ENST00000303617 1490 ntTSL 1 (best) BASIC22.2■■□□□ 1.14
CDH3P22223 C7orf49-203ENST00000430372 1579 ntTSL 5 BASIC22.2■■□□□ 1.14
CDH3P22223 FAM107B-211ENST00000468747 2633 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
CDH3P22223 E2F5-203ENST00000418930 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC22.2■■□□□ 1.14
CDH3P22223 WNT11-201ENST00000322563 1930 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
CDH3P22223 AK3-203ENST00000447596 705 ntTSL 2 BASIC22.19■■□□□ 1.14
CDH3P22223 AC004540.2-202ENST00000451264 508 ntTSL 2 BASIC22.19■■□□□ 1.14
CDH3P22223 ARPC4-208ENST00000498623 942 ntTSL 2 BASIC22.19■■□□□ 1.14
CDH3P22223 SNHG12-212ENST00000531126 719 ntTSL 1 (best) BASIC22.19■■□□□ 1.14
CDH3P22223 TMEM170A-206ENST00000569276 609 ntTSL 2 BASIC22.19■■□□□ 1.14
CDH3P22223 TRIR-202ENST00000588213 841 ntTSL 3 BASIC22.19■■□□□ 1.14
CDH3P22223 PRSS21-201ENST00000005995 1101 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
CDH3P22223 AL356740.2-201ENST00000601559 647 ntBASIC22.19■■□□□ 1.14
CDH3P22223 LINC01881-206ENST00000614114 957 ntTSL 2 BASIC22.19■■□□□ 1.14
Retrieved 100 of 98,524 protein–RNA pairs in 40.1 ms