Protein–RNA interactions for Protein: O75161

NPHP4, Nephrocystin-4, humanhuman

Predicted RBP Predictions only

Length 1,426 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4O75161 ANKRD13D-211ENST00000511455 2139 ntAPPRIS P1 TSL 1 (best) BASIC32.89■■■□□ 2.86
NPHP4O75161 SMCO4-201ENST00000298966 1104 ntAPPRIS P1 TSL 1 (best) BASIC32.89■■■□□ 2.86
NPHP4O75161 AL691442.1-201ENST00000505139 1042 ntAPPRIS P1 TSL 2 BASIC32.89■■■□□ 2.86
NPHP4O75161 AC012414.1-201ENST00000556676 535 ntBASIC32.89■■■□□ 2.86
NPHP4O75161 ZNHIT2-201ENST00000310597 1306 ntAPPRIS P1 BASIC32.89■■■□□ 2.86
NPHP4O75161 FBXL6-202ENST00000455319 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC32.89■■■□□ 2.86
NPHP4O75161 HSPBP1-206ENST00000587922 1449 ntAPPRIS P1 TSL 1 (best) BASIC32.89■■■□□ 2.86
NPHP4O75161 FAM117A-201ENST00000240364 2365 ntAPPRIS P2 TSL 1 (best) BASIC32.88■■■□□ 2.85
NPHP4O75161 AP003419.1-201ENST00000535922 470 ntTSL 3 BASIC32.88■■■□□ 2.85
NPHP4O75161 LRRC37A17P-202ENST00000570478 572 ntTSL 4 BASIC32.88■■■□□ 2.85
NPHP4O75161 NTF6G-201ENST00000591094 616 ntBASIC32.88■■■□□ 2.85
NPHP4O75161 FAR2P4-203ENST00000560285 1739 ntTSL 2 BASIC32.88■■■□□ 2.85
NPHP4O75161 ZNF653-201ENST00000293771 2240 ntAPPRIS P1 TSL 1 (best) BASIC32.88■■■□□ 2.85
NPHP4O75161 ATP6V0A2-209ENST00000613625 1620 ntTSL 1 (best) BASIC32.88■■■□□ 2.85
NPHP4O75161 CAMKMT-202ENST00000402247 665 ntTSL 2 BASIC32.87■■■□□ 2.85
NPHP4O75161 PITX1-205ENST00000506438 1305 ntAPPRIS P1 TSL 1 (best) BASIC32.87■■■□□ 2.85
NPHP4O75161 POMZP3-202ENST00000310842 1490 ntAPPRIS P1 TSL 1 (best) BASIC32.87■■■□□ 2.85
NPHP4O75161 AC019068.1-201ENST00000415226 552 ntTSL 4 BASIC32.86■■■□□ 2.85
NPHP4O75161 ZEB1-AS1-201ENST00000423714 456 ntTSL 3 BASIC32.86■■■□□ 2.85
NPHP4O75161 TK2-208ENST00000545043 1120 ntTSL 2 BASIC32.86■■■□□ 2.85
NPHP4O75161 TMEM41B-207ENST00000611268 1440 ntAPPRIS P1 TSL 1 (best) BASIC32.86■■■□□ 2.85
NPHP4O75161 CBWD2-203ENST00000416503 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC32.86■■■□□ 2.85
NPHP4O75161 ARHGAP22-202ENST00000374170 2107 ntTSL 5 BASIC32.86■■■□□ 2.85
NPHP4O75161 CRB3-202ENST00000356762 733 ntAPPRIS P4 TSL 1 (best) BASIC32.85■■■□□ 2.85
NPHP4O75161 TSPAN10-203ENST00000574882 1837 ntAPPRIS P2 TSL 1 (best) BASIC32.85■■■□□ 2.85
NPHP4O75161 KCNJ4-201ENST00000303592 2065 ntAPPRIS P1 TSL 1 (best) BASIC32.85■■■□□ 2.85
NPHP4O75161 ADAP1-201ENST00000265846 2363 ntAPPRIS P1 TSL 1 (best) BASIC32.85■■■□□ 2.85
NPHP4O75161 KAT8-202ENST00000448516 1789 ntTSL 1 (best) BASIC32.84■■■□□ 2.85
NPHP4O75161 TTBK2-205ENST00000567274 1777 ntTSL 5 BASIC32.84■■■□□ 2.85
NPHP4O75161 CERS2-205ENST00000368954 2505 ntAPPRIS P1 TSL 1 (best) BASIC32.84■■■□□ 2.85
NPHP4O75161 C14orf80-204ENST00000392522 1630 ntAPPRIS P4 TSL 5 BASIC32.84■■■□□ 2.85
NPHP4O75161 ABHD16B-201ENST00000369916 1491 ntAPPRIS P1 BASIC32.84■■■□□ 2.85
NPHP4O75161 KRT18P14-201ENST00000534205 1250 ntBASIC32.84■■■□□ 2.85
NPHP4O75161 SLC25A1-201ENST00000215882 1648 ntAPPRIS P1 TSL 1 (best) BASIC32.83■■■□□ 2.85
NPHP4O75161 MATK-204ENST00000585778 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC32.83■■■□□ 2.85
NPHP4O75161 TLX3-201ENST00000296921 1493 ntAPPRIS P1 TSL 1 (best) BASIC32.83■■■□□ 2.85
NPHP4O75161 RASGRP2-203ENST00000377486 667 ntTSL 3 BASIC32.83■■■□□ 2.85
NPHP4O75161 FGF12-AS2-201ENST00000443165 580 ntTSL 4 BASIC32.83■■■□□ 2.85
NPHP4O75161 BRD2-214ENST00000496118 735 ntTSL 1 (best) BASIC32.83■■■□□ 2.85
NPHP4O75161 AICDA-202ENST00000537228 667 ntTSL 5 BASIC32.83■■■□□ 2.85
NPHP4O75161 EMC9-206ENST00000560403 872 ntTSL 2 BASIC32.83■■■□□ 2.85
NPHP4O75161 AC010336.5-201ENST00000594308 317 ntTSL 3 BASIC32.83■■■□□ 2.85
NPHP4O75161 MADCAM1-208ENST00000621286 1203 ntAPPRIS ALT2 TSL 5 BASIC32.83■■■□□ 2.85
NPHP4O75161 TNFRSF11A-207ENST00000639222 855 ntAPPRIS ALT2 TSL 5 BASIC32.83■■■□□ 2.85
NPHP4O75161 TIMM50-201ENST00000314349 1612 ntAPPRIS P2 TSL 1 (best) BASIC32.83■■■□□ 2.85
NPHP4O75161 GLTP-201ENST00000318348 2356 ntAPPRIS P1 TSL 1 (best) BASIC32.83■■■□□ 2.85
NPHP4O75161 SAC3D1-201ENST00000398846 1566 ntAPPRIS P1 TSL 1 (best) BASIC32.83■■■□□ 2.85
NPHP4O75161 AC011825.4-201ENST00000582233 473 ntTSL 2 BASIC32.82■■■□□ 2.84
NPHP4O75161 TERF1P2-201ENST00000583350 1212 ntBASIC32.82■■■□□ 2.84
NPHP4O75161 C2CD4D-201ENST00000454109 1757 ntAPPRIS P1 TSL 2 BASIC32.82■■■□□ 2.84
NPHP4O75161 GALK1-201ENST00000225614 1445 ntAPPRIS P1 TSL 2 BASIC32.81■■■□□ 2.84
NPHP4O75161 SEPT5-201ENST00000383045 1588 ntTSL 5 BASIC32.81■■■□□ 2.84
NPHP4O75161 DPF1-202ENST00000412732 2303 ntTSL 1 (best) BASIC32.81■■■□□ 2.84
NPHP4O75161 PYCARD-201ENST00000247470 990 ntAPPRIS P1 TSL 1 (best) BASIC32.81■■■□□ 2.84
NPHP4O75161 STYXL1-204ENST00000360591 1127 ntTSL 5 BASIC32.81■■■□□ 2.84
NPHP4O75161 CD63-202ENST00000420846 981 ntAPPRIS P1 TSL 5 BASIC32.81■■■□□ 2.84
NPHP4O75161 PRKCQ-AS1-204ENST00000455810 920 ntTSL 2 BASIC32.81■■■□□ 2.84
NPHP4O75161 RAP2CP1-201ENST00000605103 478 ntBASIC32.81■■■□□ 2.84
NPHP4O75161 ST7-205ENST00000393446 2114 ntTSL 5 BASIC32.81■■■□□ 2.84
NPHP4O75161 TXNRD2-204ENST00000400521 2115 ntAPPRIS P2 TSL 1 (best) BASIC32.81■■■□□ 2.84
NPHP4O75161 SLC16A3-214ENST00000582743 2002 ntAPPRIS P1 TSL 1 (best) BASIC32.8■■■□□ 2.84
NPHP4O75161 MIR572-201ENST00000384983 95 ntBASIC32.8■■■□□ 2.84
NPHP4O75161 IGHV3-19-201ENST00000521488 291 ntBASIC32.8■■■□□ 2.84
NPHP4O75161 PRKAR1B-203ENST00000403562 1917 ntAPPRIS P1 TSL 1 (best) BASIC32.8■■■□□ 2.84
NPHP4O75161 AC007773.1-201ENST00000592680 972 ntTSL 2 BASIC32.79■■■□□ 2.84
NPHP4O75161 DNAJC25-GNG10-201ENST00000374294 1448 ntAPPRIS P1 TSL 2 BASIC32.79■■■□□ 2.84
NPHP4O75161 FAM66C-205ENST00000456135 1216 ntTSL 5 BASIC32.78■■■□□ 2.84
NPHP4O75161 AL354811.1-201ENST00000610286 706 ntBASIC32.78■■■□□ 2.84
NPHP4O75161 AL032819.3-201ENST00000640283 925 ntAPPRIS P1 TSL 5 BASIC32.78■■■□□ 2.84
NPHP4O75161 FXYD3-201ENST00000344013 1404 ntTSL 5 BASIC32.78■■■□□ 2.84
NPHP4O75161 CCKBR-206ENST00000532715 1734 ntTSL 3 BASIC32.78■■■□□ 2.84
NPHP4O75161 BTBD6-205ENST00000536364 1973 ntAPPRIS P2 TSL 5 BASIC32.78■■■□□ 2.84
NPHP4O75161 AC097639.1-201ENST00000565519 1891 ntBASIC32.78■■■□□ 2.84
NPHP4O75161 HADH-203ENST00000505878 1719 ntTSL 1 (best) BASIC32.78■■■□□ 2.84
NPHP4O75161 THAP11-201ENST00000303596 2114 ntAPPRIS P1 BASIC32.77■■■□□ 2.84
NPHP4O75161 TMEM41B-205ENST00000533723 723 ntTSL 2 BASIC32.77■■■□□ 2.84
NPHP4O75161 SDS-201ENST00000257549 1606 ntAPPRIS P1 TSL 2 BASIC32.77■■■□□ 2.84
NPHP4O75161 ENTPD5-206ENST00000556242 1437 ntTSL 5 BASIC32.77■■■□□ 2.84
NPHP4O75161 NFKBIB-201ENST00000313582 1159 ntAPPRIS P1 TSL 1 (best) BASIC32.77■■■□□ 2.84
NPHP4O75161 NXNL2-201ENST00000375854 805 ntAPPRIS P1 TSL 5 BASIC32.77■■■□□ 2.84
NPHP4O75161 STOML2-202ENST00000452248 1296 ntTSL 2 BASIC32.77■■■□□ 2.84
NPHP4O75161 STOML2-205ENST00000619795 1293 ntTSL 3 BASIC32.77■■■□□ 2.84
NPHP4O75161 TRIM14-203ENST00000375098 1792 ntAPPRIS P1 TSL 2 BASIC32.76■■■□□ 2.84
NPHP4O75161 MTCH1-201ENST00000373616 2006 ntTSL 1 (best) BASIC32.76■■■□□ 2.84
NPHP4O75161 RTN2-202ENST00000344680 2063 ntAPPRIS P1 TSL 1 (best) BASIC32.76■■■□□ 2.84
NPHP4O75161 UCK1-204ENST00000372215 2167 ntAPPRIS P1 TSL 1 (best) BASIC32.76■■■□□ 2.83
NPHP4O75161 NANOS2-201ENST00000341294 1657 ntAPPRIS P1 BASIC32.76■■■□□ 2.83
NPHP4O75161 CDKN2AIPNL-201ENST00000395009 800 ntTSL 1 (best) BASIC32.76■■■□□ 2.83
NPHP4O75161 AC092171.1-201ENST00000455866 753 ntTSL 2 BASIC32.76■■■□□ 2.83
NPHP4O75161 STK32C-205ENST00000456004 607 ntTSL 2 BASIC32.76■■■□□ 2.83
NPHP4O75161 NDUFA6-AS1-207ENST00000595777 833 ntTSL 5 BASIC32.76■■■□□ 2.83
NPHP4O75161 TMEM230-210ENST00000612323 1231 ntTSL 1 (best) BASIC32.76■■■□□ 2.83
NPHP4O75161 CNNM2-201ENST00000369875 2059 ntTSL 1 (best) BASIC32.76■■■□□ 2.83
NPHP4O75161 NT5C-201ENST00000245552 954 ntAPPRIS P1 TSL 1 (best) BASIC32.75■■■□□ 2.83
NPHP4O75161 TNFRSF18-202ENST00000379265 705 ntAPPRIS ALT2 TSL 1 (best) BASIC32.75■■■□□ 2.83
NPHP4O75161 UBAP1L-203ENST00000559089 1694 ntAPPRIS P1 TSL 1 (best) BASIC32.75■■■□□ 2.83
NPHP4O75161 ST7L-221ENST00000490067 1780 ntTSL 1 (best) BASIC32.75■■■□□ 2.83
NPHP4O75161 NKAIN3-202ENST00000523211 1988 ntAPPRIS P1 TSL 2 BASIC32.74■■■□□ 2.83
NPHP4O75161 OLFM1-206ENST00000371799 961 ntTSL 1 (best) BASIC32.74■■■□□ 2.83
NPHP4O75161 AC091138.1-202ENST00000578967 457 ntTSL 2 BASIC32.74■■■□□ 2.83
Retrieved 100 of 98,524 protein–RNA pairs in 15.7 ms