Protein–RNA interactions for Protein: O00300

TNFRSF11B, Tumor necrosis factor receptor superfamily member 11B, humanhuman

Predictions only

Length 401 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF11BO00300 C5orf49-201ENST00000399810 2385 ntAPPRIS P2 TSL 1 (best) BASIC21.12■□□□□ 0.97
TNFRSF11BO00300 TNFRSF10B-202ENST00000347739 1723 ntAPPRIS ALT2 TSL 1 (best) BASIC21.12■□□□□ 0.97
TNFRSF11BO00300 ZNF74-204ENST00000405993 1839 ntAPPRIS ALT2 TSL 5 BASIC21.12■□□□□ 0.97
TNFRSF11BO00300 TLX1-203ENST00000467928 1838 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
TNFRSF11BO00300 DUSP22-201ENST00000344450 1485 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
TNFRSF11BO00300 TMEM120A-214ENST00000493111 1456 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
TNFRSF11BO00300 TANGO2-201ENST00000327374 2273 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
TNFRSF11BO00300 AC092068.2-201ENST00000590491 1708 ntBASIC21.12■□□□□ 0.97
TNFRSF11BO00300 SLIT1-203ENST00000371041 1695 ntTSL 2 BASIC21.12■□□□□ 0.97
TNFRSF11BO00300 PPP1CC-206ENST00000550991 1882 ntTSL 2 BASIC21.11■□□□□ 0.97
TNFRSF11BO00300 NR6A1-201ENST00000344523 1846 ntAPPRIS ALT2 TSL 5 BASIC21.11■□□□□ 0.97
TNFRSF11BO00300 FHL2-203ENST00000358129 1578 ntTSL 5 BASIC21.11■□□□□ 0.97
TNFRSF11BO00300 DUSP8P3-201ENST00000399571 1760 ntBASIC21.11■□□□□ 0.97
TNFRSF11BO00300 PDLIM2-202ENST00000308354 2236 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
TNFRSF11BO00300 NXNL1-201ENST00000301944 946 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
TNFRSF11BO00300 RASGEF1B-211ENST00000514050 537 ntTSL 2 BASIC21.11■□□□□ 0.97
TNFRSF11BO00300 RPS2-202ENST00000526522 924 ntTSL 2 BASIC21.11■□□□□ 0.97
TNFRSF11BO00300 SAP25-204ENST00000622764 1031 ntAPPRIS ALT2 TSL 5 BASIC21.11■□□□□ 0.97
TNFRSF11BO00300 BTBD6-201ENST00000327471 1948 ntAPPRIS ALT2 TSL 2 BASIC21.11■□□□□ 0.97
TNFRSF11BO00300 ANXA8-204ENST00000583911 1874 ntTSL 2 BASIC21.11■□□□□ 0.97
TNFRSF11BO00300 WHAMM-201ENST00000286760 5101 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
TNFRSF11BO00300 PTPRJ-201ENST00000418331 5122 ntAPPRIS P2 TSL 1 (best) BASIC21.11■□□□□ 0.97
TNFRSF11BO00300 ACTL10-201ENST00000330271 2028 ntAPPRIS P1 BASIC21.11■□□□□ 0.97
TNFRSF11BO00300 JMJD8-201ENST00000412368 2038 ntAPPRIS P2 TSL 1 (best) BASIC21.11■□□□□ 0.97
TNFRSF11BO00300 CNN3-201ENST00000370206 2165 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
TNFRSF11BO00300 CLDN5-201ENST00000403084 2357 ntBASIC21.1■□□□□ 0.97
TNFRSF11BO00300 TMEM259-201ENST00000333175 2581 ntAPPRIS P3 TSL 1 (best) BASIC21.1■□□□□ 0.97
TNFRSF11BO00300 BCKDHB-202ENST00000356489 1514 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
TNFRSF11BO00300 AC090877.2-201ENST00000558441 1738 ntBASIC21.1■□□□□ 0.97
TNFRSF11BO00300 B3GNT6-202ENST00000622824 2503 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
TNFRSF11BO00300 MAPK3-203ENST00000395199 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC21.1■□□□□ 0.97
TNFRSF11BO00300 MAPK3-205ENST00000395202 1008 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
TNFRSF11BO00300 HES4-202ENST00000428771 1040 ntTSL 2 BASIC21.1■□□□□ 0.97
TNFRSF11BO00300 PSMG4-206ENST00000438998 838 ntAPPRIS P1 TSL 2 BASIC21.1■□□□□ 0.97
TNFRSF11BO00300 HES4-204ENST00000484667 667 ntTSL 3 BASIC21.1■□□□□ 0.97
TNFRSF11BO00300 ZNF213-208ENST00000576416 2240 ntAPPRIS P1 TSL 2 BASIC21.1■□□□□ 0.97
TNFRSF11BO00300 EI24-213ENST00000618552 1747 ntTSL 5 BASIC21.09■□□□□ 0.97
TNFRSF11BO00300 LRRC34-206ENST00000522526 1899 ntAPPRIS P3 TSL 1 (best) BASIC21.09■□□□□ 0.97
TNFRSF11BO00300 SMARCD2-201ENST00000225742 1800 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
TNFRSF11BO00300 MCMBP-202ENST00000369077 2465 ntAPPRIS ALT1 TSL 1 (best) BASIC21.09■□□□□ 0.97
TNFRSF11BO00300 FGF13-AS1-202ENST00000446383 584 ntTSL 3 BASIC21.09■□□□□ 0.97
TNFRSF11BO00300 MYBL2-201ENST00000217026 2639 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
TNFRSF11BO00300 LYPLA1-201ENST00000316963 2585 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
TNFRSF11BO00300 PRODH-203ENST00000357068 2462 ntAPPRIS P3 TSL 1 (best) BASIC21.09■□□□□ 0.97
TNFRSF11BO00300 C8orf82-202ENST00000524821 2476 ntAPPRIS P2 TSL 1 (best) BASIC21.09■□□□□ 0.97
TNFRSF11BO00300 B3GALT6-201ENST00000379198 2777 ntAPPRIS P1 BASIC21.08■□□□□ 0.97
TNFRSF11BO00300 ZNF668-205ENST00000426488 2282 ntTSL 5 BASIC21.08■□□□□ 0.97
TNFRSF11BO00300 TPRN-202ENST00000409012 2718 ntAPPRIS P2 TSL 1 (best) BASIC21.08■□□□□ 0.97
TNFRSF11BO00300 RASSF10-201ENST00000529419 2530 ntAPPRIS P1 BASIC21.08■□□□□ 0.97
TNFRSF11BO00300 TMEM8B-203ENST00000377996 2473 ntTSL 2 BASIC21.08■□□□□ 0.97
TNFRSF11BO00300 RHOBTB3-206ENST00000506817 1432 ntTSL 2 BASIC21.08■□□□□ 0.97
TNFRSF11BO00300 AL161729.1-201ENST00000604104 1402 ntBASIC21.08■□□□□ 0.97
TNFRSF11BO00300 NEK6-214ENST00000545174 2573 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
TNFRSF11BO00300 SLC39A14-202ENST00000289952 2137 ntAPPRIS ALT2 TSL 2 BASIC21.08■□□□□ 0.96
TNFRSF11BO00300 LGR4-201ENST00000379214 5206 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
TNFRSF11BO00300 MATK-202ENST00000395040 1907 ntAPPRIS ALT2 TSL 1 (best) BASIC21.08■□□□□ 0.96
TNFRSF11BO00300 MROH6-202ENST00000524906 1794 ntAPPRIS ALT2 TSL 3 BASIC21.08■□□□□ 0.96
TNFRSF11BO00300 USP36-218ENST00000590546 1771 ntTSL 1 (best) BASIC21.08■□□□□ 0.96
TNFRSF11BO00300 TANGO2-207ENST00000420290 1859 ntTSL 2 BASIC21.07■□□□□ 0.96
TNFRSF11BO00300 CACNA1H-202ENST00000358590 8069 ntAPPRIS ALT2 TSL 5 BASIC21.07■□□□□ 0.96
TNFRSF11BO00300 LSR-202ENST00000354900 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC21.07■□□□□ 0.96
TNFRSF11BO00300 U2AF1-201ENST00000291552 962 ntAPPRIS P3 TSL 1 (best) BASIC21.07■□□□□ 0.96
TNFRSF11BO00300 FAM98C-202ENST00000343358 1006 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
TNFRSF11BO00300 AGO3-204ENST00000397828 1035 ntTSL 2 BASIC21.07■□□□□ 0.96
TNFRSF11BO00300 PTPA-210ENST00000414510 1153 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
TNFRSF11BO00300 ACOT12-204ENST00000513751 612 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
TNFRSF11BO00300 OPRD1-202ENST00000621425 1217 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
TNFRSF11BO00300 IER5L-201ENST00000372491 2711 ntAPPRIS P1 BASIC21.07■□□□□ 0.96
TNFRSF11BO00300 NKIRAS2-206ENST00000393885 1909 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
TNFRSF11BO00300 SLC10A3-201ENST00000263512 2161 ntAPPRIS P3 TSL 2 BASIC21.07■□□□□ 0.96
TNFRSF11BO00300 C19orf68-201ENST00000328759 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC21.07■□□□□ 0.96
TNFRSF11BO00300 KAT5-201ENST00000341318 2296 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
TNFRSF11BO00300 MRPL10-202ENST00000351111 1725 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
TNFRSF11BO00300 HOMER3-204ENST00000539827 1979 ntAPPRIS P3 TSL 1 (best) BASIC21.06■□□□□ 0.96
TNFRSF11BO00300 RBFOX1-206ENST00000535565 1599 ntTSL 2 BASIC21.06■□□□□ 0.96
TNFRSF11BO00300 GAS2L1-201ENST00000406549 1803 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
TNFRSF11BO00300 HIRA-201ENST00000263208 4053 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
TNFRSF11BO00300 YPEL1-202ENST00000403503 466 ntTSL 3 BASIC21.06■□□□□ 0.96
TNFRSF11BO00300 UBE2D2-205ENST00000505548 1113 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
TNFRSF11BO00300 CASTOR2-201ENST00000616305 1257 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
TNFRSF11BO00300 PDLIM2-203ENST00000339162 2226 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
TNFRSF11BO00300 EP400NL-214ENST00000641289 2402 ntBASIC21.06■□□□□ 0.96
TNFRSF11BO00300 CD37-213ENST00000598095 1598 ntTSL 2 BASIC21.06■□□□□ 0.96
TNFRSF11BO00300 GPIHBP1-201ENST00000622500 2282 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
TNFRSF11BO00300 C1orf229-201ENST00000623686 2258 ntBASIC21.06■□□□□ 0.96
TNFRSF11BO00300 PNLIPRP2-205ENST00000611850 1407 ntTSL 5 BASIC21.05■□□□□ 0.96
TNFRSF11BO00300 TBX1-202ENST00000332710 2084 ntAPPRIS P4 TSL 1 (best) BASIC21.05■□□□□ 0.96
TNFRSF11BO00300 KCNQ5-205ENST00000370398 6345 ntAPPRIS P3 TSL 1 (best) BASIC21.05■□□□□ 0.96
TNFRSF11BO00300 PVT1-219ENST00000523427 938 ntTSL 3 BASIC21.05■□□□□ 0.96
TNFRSF11BO00300 CDIPT-201ENST00000219789 2353 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
TNFRSF11BO00300 CABLES1-201ENST00000256925 5002 ntAPPRIS P4 TSL 1 (best) BASIC21.05■□□□□ 0.96
TNFRSF11BO00300 DOK1-203ENST00000409429 1955 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
TNFRSF11BO00300 EGR4-202ENST00000545030 2372 ntAPPRIS P2 TSL 1 (best) BASIC21.04■□□□□ 0.96
TNFRSF11BO00300 FAM129C-211ENST00000600871 1822 ntAPPRIS ALT2 TSL 5 BASIC21.04■□□□□ 0.96
TNFRSF11BO00300 FMR1-AS1-201ENST00000594922 2005 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
TNFRSF11BO00300 UBXN2A-202ENST00000404924 1557 ntAPPRIS P1 TSL 2 BASIC21.04■□□□□ 0.96
TNFRSF11BO00300 AF117829.1-207ENST00000504145 1572 ntTSL 3 BASIC21.04■□□□□ 0.96
TNFRSF11BO00300 ASAP2-201ENST00000281419 5712 ntAPPRIS P3 TSL 1 (best) BASIC21.04■□□□□ 0.96
TNFRSF11BO00300 CACNG8-201ENST00000270458 8747 ntAPPRIS ALT2 TSL 1 (best) BASIC21.04■□□□□ 0.96
TNFRSF11BO00300 LRRC24-202ENST00000533758 1701 ntAPPRIS ALT2 TSL 5 BASIC21.04■□□□□ 0.96
Retrieved 100 of 98,524 protein–RNA pairs in 23.3 ms