Protein–RNA interactions for Protein: A6NCS4

NKX2-6, Homeobox protein Nkx-2.6, humanhuman

Predictions only

Length 301 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-6A6NCS4 AUH-201ENST00000303617 1490 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
NKX2-6A6NCS4 FBXL8-201ENST00000258200 1658 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
NKX2-6A6NCS4 MEIS2-204ENST00000397620 2295 ntTSL 2 BASIC20.34■□□□□ 0.85
NKX2-6A6NCS4 MARCH2-201ENST00000215555 1376 ntAPPRIS P1 TSL 5 BASIC20.34■□□□□ 0.85
NKX2-6A6NCS4 QKI-207ENST00000453779 5685 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
NKX2-6A6NCS4 FNDC4-201ENST00000264703 1657 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
NKX2-6A6NCS4 SRP68-202ENST00000539137 2386 ntTSL 2 BASIC20.33■□□□□ 0.85
NKX2-6A6NCS4 ZNF641-205ENST00000547026 1823 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
NKX2-6A6NCS4 STX10-202ENST00000343587 1128 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
NKX2-6A6NCS4 EPDR1-202ENST00000423717 638 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
NKX2-6A6NCS4 SERGEF-219ENST00000532265 1124 ntTSL 2 BASIC20.33■□□□□ 0.85
NKX2-6A6NCS4 CCDC189-211ENST00000545825 1046 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
NKX2-6A6NCS4 AC018413.1-201ENST00000581996 1200 ntTSL 2 BASIC20.33■□□□□ 0.85
NKX2-6A6NCS4 SNHG7-204ENST00000447221 2157 ntTSL 2 BASIC20.33■□□□□ 0.85
NKX2-6A6NCS4 TSPOAP1-AS1-205ENST00000580022 2337 ntTSL 2 BASIC20.33■□□□□ 0.84
NKX2-6A6NCS4 UBL7-202ENST00000395081 1427 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
NKX2-6A6NCS4 FAM57A-202ENST00000308278 2412 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
NKX2-6A6NCS4 OTUD5-201ENST00000156084 2740 ntAPPRIS P3 TSL 1 (best) BASIC20.33■□□□□ 0.84
NKX2-6A6NCS4 AC010501.1-201ENST00000606270 1962 ntBASIC20.32■□□□□ 0.84
NKX2-6A6NCS4 JAG2-202ENST00000347004 5720 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
NKX2-6A6NCS4 HADH-203ENST00000505878 1719 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
NKX2-6A6NCS4 BICDL2-203ENST00000572449 1984 ntAPPRIS P1 TSL 5 BASIC20.32■□□□□ 0.84
NKX2-6A6NCS4 ANKS3-204ENST00000585773 1946 ntTSL 2 BASIC20.31■□□□□ 0.84
NKX2-6A6NCS4 MBOAT7-205ENST00000431666 2471 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
NKX2-6A6NCS4 HSPE1-203ENST00000409729 478 ntTSL 2 BASIC20.31■□□□□ 0.84
NKX2-6A6NCS4 GATA2-AS1-201ENST00000464242 1163 ntTSL 2 BASIC20.31■□□□□ 0.84
NKX2-6A6NCS4 AL136967.2-201ENST00000623968 743 ntBASIC20.31■□□□□ 0.84
NKX2-6A6NCS4 WIPI2-204ENST00000404704 1663 ntTSL 5 BASIC20.31■□□□□ 0.84
NKX2-6A6NCS4 HSF4-225ENST00000584272 1549 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
NKX2-6A6NCS4 SDSL-201ENST00000345635 1397 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
NKX2-6A6NCS4 PURG-202ENST00000475541 2875 ntAPPRIS P1 BASIC20.31■□□□□ 0.84
NKX2-6A6NCS4 SIRT3-204ENST00000525319 1475 ntAPPRIS ALT2 TSL 2 BASIC20.3■□□□□ 0.84
NKX2-6A6NCS4 MEIS1-AS3-201ENST00000454167 707 ntTSL 4 BASIC20.3■□□□□ 0.84
NKX2-6A6NCS4 STOX2-205ENST00000513034 807 ntTSL 3 BASIC20.3■□□□□ 0.84
NKX2-6A6NCS4 GSX2-205ENST00000611459 1262 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
NKX2-6A6NCS4 MIR5787-201ENST00000611784 55 ntBASIC20.3■□□□□ 0.84
NKX2-6A6NCS4 BAG1-212ENST00000641048 1038 ntAPPRIS P3 BASIC20.3■□□□□ 0.84
NKX2-6A6NCS4 LLGL2-202ENST00000375227 1374 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
NKX2-6A6NCS4 PMS1-205ENST00000409985 1882 ntTSL 2 BASIC20.3■□□□□ 0.84
NKX2-6A6NCS4 CYS1-201ENST00000381813 2738 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
NKX2-6A6NCS4 KCNMA1-283ENST00000640523 5425 ntAPPRIS ALT2 TSL 5 BASIC20.29■□□□□ 0.84
NKX2-6A6NCS4 GLRX3-201ENST00000331244 1302 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
NKX2-6A6NCS4 C19orf12-204ENST00000392276 1912 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
NKX2-6A6NCS4 HOMER3-205ENST00000542541 1607 ntAPPRIS P3 TSL 1 (best) BASIC20.29■□□□□ 0.84
NKX2-6A6NCS4 TMEM147-203ENST00000392205 767 ntTSL 2 BASIC20.29■□□□□ 0.84
NKX2-6A6NCS4 CAMTA1-208ENST00000473578 567 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
NKX2-6A6NCS4 TMEM218-209ENST00000529583 848 ntAPPRIS P1 TSL 3 BASIC20.29■□□□□ 0.84
NKX2-6A6NCS4 DUX4L19-201ENST00000557448 1267 ntBASIC20.29■□□□□ 0.84
NKX2-6A6NCS4 SYT6-210ENST00000641643 1587 ntBASIC20.29■□□□□ 0.84
NKX2-6A6NCS4 MAZ-201ENST00000219782 2698 ntAPPRIS P4 TSL 1 (best) BASIC20.29■□□□□ 0.84
NKX2-6A6NCS4 ZCCHC2-201ENST00000269499 5959 ntAPPRIS P2 TSL 5 BASIC20.28■□□□□ 0.84
NKX2-6A6NCS4 ARMC10-204ENST00000425331 2443 ntTSL 2 BASIC20.28■□□□□ 0.84
NKX2-6A6NCS4 PIP5K1C-203ENST00000539785 2289 ntAPPRIS ALT2 TSL 2 BASIC20.28■□□□□ 0.84
NKX2-6A6NCS4 RINL-202ENST00000591812 1910 ntAPPRIS ALT2 TSL 2 BASIC20.28■□□□□ 0.84
NKX2-6A6NCS4 RFWD2-201ENST00000308769 2124 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
NKX2-6A6NCS4 D2HGDH-203ENST00000403782 2208 ntTSL 2 BASIC20.28■□□□□ 0.84
NKX2-6A6NCS4 HES6-201ENST00000272937 1454 ntAPPRIS P3 TSL 1 (best) BASIC20.28■□□□□ 0.84
NKX2-6A6NCS4 SRR-201ENST00000344595 2728 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
NKX2-6A6NCS4 CPLX1-203ENST00000505203 2011 ntTSL 2 BASIC20.27■□□□□ 0.84
NKX2-6A6NCS4 AC093323.1-202ENST00000635031 2045 ntBASIC20.27■□□□□ 0.84
NKX2-6A6NCS4 MATK-204ENST00000585778 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
NKX2-6A6NCS4 RBMXL2-201ENST00000306904 1874 ntAPPRIS P1 BASIC20.27■□□□□ 0.84
NKX2-6A6NCS4 SIGMAR1-201ENST00000277010 1656 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
NKX2-6A6NCS4 AC012123.1-201ENST00000426194 1661 ntTSL 5 BASIC20.27■□□□□ 0.84
NKX2-6A6NCS4 CREB3L3-205ENST00000602257 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
NKX2-6A6NCS4 REST-206ENST00000612429 1376 ntTSL 5 BASIC20.27■□□□□ 0.84
NKX2-6A6NCS4 REST-207ENST00000616975 1370 ntTSL 5 BASIC20.27■□□□□ 0.84
NKX2-6A6NCS4 LAMTOR1-201ENST00000278671 1179 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
NKX2-6A6NCS4 BAD-203ENST00000394532 1157 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
NKX2-6A6NCS4 MIR939-201ENST00000401314 82 ntBASIC20.27■□□□□ 0.84
NKX2-6A6NCS4 YJEFN3-201ENST00000436027 878 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
NKX2-6A6NCS4 VAMP2-204ENST00000488857 874 ntAPPRIS ALT1 TSL 3 BASIC20.27■□□□□ 0.84
NKX2-6A6NCS4 AP001330.3-201ENST00000520123 633 ntBASIC20.27■□□□□ 0.84
NKX2-6A6NCS4 GJD3-201ENST00000578689 885 ntAPPRIS P1 BASIC20.27■□□□□ 0.84
NKX2-6A6NCS4 FAM222B-213ENST00000583522 556 ntTSL 2 BASIC20.27■□□□□ 0.84
NKX2-6A6NCS4 ARHGDIA-217ENST00000584461 886 ntTSL 2 BASIC20.27■□□□□ 0.84
NKX2-6A6NCS4 NFKBIE-201ENST00000275015 2581 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
NKX2-6A6NCS4 SDHAP1-204ENST00000427415 559 ntTSL 4 BASIC20.26■□□□□ 0.83
NKX2-6A6NCS4 AC104564.3-201ENST00000582367 638 ntBASIC20.26■□□□□ 0.83
NKX2-6A6NCS4 MIR4767-201ENST00000582827 78 ntBASIC20.26■□□□□ 0.83
NKX2-6A6NCS4 EZH2-206ENST00000478654 2522 ntTSL 5 BASIC20.26■□□□□ 0.83
NKX2-6A6NCS4 ZKSCAN7-206ENST00000431636 1692 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
NKX2-6A6NCS4 CCND3-223ENST00000616010 2047 ntTSL 5 BASIC20.26■□□□□ 0.83
NKX2-6A6NCS4 PRADC1-201ENST00000258083 1083 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
NKX2-6A6NCS4 PABPN1-202ENST00000397276 2768 ntAPPRIS ALT1 TSL 1 (best) BASIC20.25■□□□□ 0.83
NKX2-6A6NCS4 TMEM185A-208ENST00000611119 2662 ntTSL 2 BASIC20.25■□□□□ 0.83
NKX2-6A6NCS4 ATG16L2-201ENST00000321297 2243 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
NKX2-6A6NCS4 GYG2-205ENST00000398806 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
NKX2-6A6NCS4 DCAF15-201ENST00000254337 2278 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
NKX2-6A6NCS4 METTL23-201ENST00000341249 1155 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
NKX2-6A6NCS4 PTMA-205ENST00000410064 814 ntTSL 2 BASIC20.24■□□□□ 0.83
NKX2-6A6NCS4 ZNF264-206ENST00000600531 774 ntTSL 2 BASIC20.24■□□□□ 0.83
NKX2-6A6NCS4 SF1-220ENST00000626028 704 ntTSL 2 BASIC20.24■□□□□ 0.83
NKX2-6A6NCS4 SLC35A3-216ENST00000639221 1032 ntTSL 5 BASIC20.24■□□□□ 0.83
NKX2-6A6NCS4 SPIRE2-205ENST00000563972 1823 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
NKX2-6A6NCS4 C1orf35-201ENST00000272139 1427 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
NKX2-6A6NCS4 DLK2-202ENST00000372485 1572 ntAPPRIS ALT1 TSL 5 BASIC20.24■□□□□ 0.83
NKX2-6A6NCS4 BTBD6-203ENST00000392554 2176 ntAPPRIS P2 TSL 1 (best) BASIC20.24■□□□□ 0.83
NKX2-6A6NCS4 C14orf80-204ENST00000392522 1630 ntAPPRIS P4 TSL 5 BASIC20.24■□□□□ 0.83
NKX2-6A6NCS4 SLC16A11-202ENST00000447225 1779 ntAPPRIS ALT2 TSL 5 BASIC20.23■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 18.4 ms