Protein–RNA interactions for Protein: Q9Y4P1

ATG4B, Cysteine protease ATG4B, humanhuman

Predictions only

Length 393 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4BQ9Y4P1 MBOAT2-201ENST00000305997 7751 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
ATG4BQ9Y4P1 LINC00924-202ENST00000556053 2682 ntTSL 2 BASIC14.14□□□□□ -0.15
ATG4BQ9Y4P1 USP10-201ENST00000219473 3009 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
ATG4BQ9Y4P1 MPP1-204ENST00000393531 1389 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
ATG4BQ9Y4P1 MROH1-207ENST00000528919 5234 ntAPPRIS P3 TSL 1 (best) BASIC14.14□□□□□ -0.15
ATG4BQ9Y4P1 CREB3L3-204ENST00000602147 1382 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
ATG4BQ9Y4P1 GLIS2-201ENST00000262366 4469 ntAPPRIS P1 TSL 2 BASIC14.14□□□□□ -0.15
ATG4BQ9Y4P1 DYNLRB2-201ENST00000305904 497 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
ATG4BQ9Y4P1 NCR3-201ENST00000340027 1042 ntAPPRIS P3 TSL 1 (best) BASIC14.14□□□□□ -0.15
ATG4BQ9Y4P1 GATD1-203ENST00000397472 790 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
ATG4BQ9Y4P1 KRT43P-201ENST00000434019 910 ntBASIC14.14□□□□□ -0.15
ATG4BQ9Y4P1 HOXB-AS1-201ENST00000435312 806 ntTSL 5 BASIC14.14□□□□□ -0.15
ATG4BQ9Y4P1 DMKN-216ENST00000458071 510 ntAPPRIS ALT2 TSL 3 BASIC14.14□□□□□ -0.15
ATG4BQ9Y4P1 FTLP10-202ENST00000505798 471 ntBASIC14.14□□□□□ -0.15
ATG4BQ9Y4P1 AL391280.1-201ENST00000506969 1062 ntBASIC14.14□□□□□ -0.15
ATG4BQ9Y4P1 SLC45A2-204ENST00000509381 1040 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
ATG4BQ9Y4P1 LINC02449-203ENST00000536034 451 ntTSL 3 BASIC14.14□□□□□ -0.15
ATG4BQ9Y4P1 RPL28-206ENST00000558752 671 ntTSL 3 BASIC14.14□□□□□ -0.15
ATG4BQ9Y4P1 GCHFR-204ENST00000559445 626 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
ATG4BQ9Y4P1 ORC6-206ENST00000568364 888 ntTSL 5 BASIC14.14□□□□□ -0.15
ATG4BQ9Y4P1 PIH1D1-209ENST00000596049 992 ntAPPRIS P1 TSL 5 BASIC14.14□□□□□ -0.15
ATG4BQ9Y4P1 RIC8A-217ENST00000626818 159 ntTSL 5 BASIC14.14□□□□□ -0.15
ATG4BQ9Y4P1 CDC37-201ENST00000222005 1608 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
ATG4BQ9Y4P1 KDM2B-201ENST00000377069 5224 ntAPPRIS ALT2 TSL 2 BASIC14.14□□□□□ -0.15
ATG4BQ9Y4P1 TARS2-203ENST00000369054 1998 ntTSL 2 BASIC14.14□□□□□ -0.15
ATG4BQ9Y4P1 AL354702.1-201ENST00000442006 1960 ntBASIC14.14□□□□□ -0.15
ATG4BQ9Y4P1 ADAM33-206ENST00000617732 1971 ntTSL 5 BASIC14.14□□□□□ -0.15
ATG4BQ9Y4P1 SFTA3-204ENST00000518529 1531 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
ATG4BQ9Y4P1 KCNT1-208ENST00000488444 3696 ntAPPRIS ALT2 TSL 5 BASIC14.14□□□□□ -0.15
ATG4BQ9Y4P1 PMM2-201ENST00000268261 2313 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
ATG4BQ9Y4P1 DEPDC7-201ENST00000241051 1755 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
ATG4BQ9Y4P1 SMARCA4-207ENST00000541122 5139 ntAPPRIS P4 TSL 5 BASIC14.14□□□□□ -0.15
ATG4BQ9Y4P1 SLC35G3-201ENST00000297307 2004 ntAPPRIS P1 BASIC14.14□□□□□ -0.15
ATG4BQ9Y4P1 BLCAP-205ENST00000397137 2036 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
ATG4BQ9Y4P1 TNFAIP8L3-201ENST00000327536 2262 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
ATG4BQ9Y4P1 TRMT11-201ENST00000334379 1565 ntAPPRIS P2 TSL 1 (best) BASIC14.13□□□□□ -0.15
ATG4BQ9Y4P1 TANGO2-205ENST00000401886 1559 ntTSL 5 BASIC14.13□□□□□ -0.15
ATG4BQ9Y4P1 OPA1-204ENST00000361828 6381 ntAPPRIS ALT1 TSL 5 BASIC14.13□□□□□ -0.15
ATG4BQ9Y4P1 SNAP91-213ENST00000521485 4521 ntAPPRIS ALT2 TSL 5 BASIC14.13□□□□□ -0.15
ATG4BQ9Y4P1 TIFA-201ENST00000361717 4157 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
ATG4BQ9Y4P1 RNF157-AS1-204ENST00000590137 1812 ntTSL 2 BASIC14.13□□□□□ -0.15
ATG4BQ9Y4P1 CLIC5-208ENST00000544153 2051 ntTSL 2 BASIC14.13□□□□□ -0.15
ATG4BQ9Y4P1 NFATC4-206ENST00000539237 5686 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
ATG4BQ9Y4P1 AMT-204ENST00000427987 1646 ntTSL 5 BASIC14.13□□□□□ -0.15
ATG4BQ9Y4P1 ZNF385A-205ENST00000546970 2494 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
ATG4BQ9Y4P1 MAP7D1-204ENST00000373151 3324 ntAPPRIS P3 TSL 1 (best) BASIC14.13□□□□□ -0.15
ATG4BQ9Y4P1 LIN9-201ENST00000328205 3567 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
ATG4BQ9Y4P1 POLR2I-201ENST00000221859 913 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
ATG4BQ9Y4P1 LBX2-201ENST00000341396 886 ntTSL 3 BASIC14.13□□□□□ -0.15
ATG4BQ9Y4P1 LRRC30-201ENST00000383467 923 ntAPPRIS P1 BASIC14.13□□□□□ -0.15
ATG4BQ9Y4P1 DBI-203ENST00000393103 599 ntAPPRIS P4 TSL 1 (best) BASIC14.13□□□□□ -0.15
ATG4BQ9Y4P1 HIST1H2BPS3-201ENST00000419683 341 ntBASIC14.13□□□□□ -0.15
ATG4BQ9Y4P1 CNN2P8-201ENST00000421872 913 ntBASIC14.13□□□□□ -0.15
ATG4BQ9Y4P1 AC234783.1-201ENST00000441761 496 ntBASIC14.13□□□□□ -0.15
ATG4BQ9Y4P1 RHOXF1P1-201ENST00000454625 772 ntTSL 3 BASIC14.13□□□□□ -0.15
ATG4BQ9Y4P1 ATG10-207ENST00000513443 978 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
ATG4BQ9Y4P1 RPL8-205ENST00000527914 551 ntTSL 3 BASIC14.13□□□□□ -0.15
ATG4BQ9Y4P1 ANAPC15-214ENST00000543587 883 ntAPPRIS ALT1 TSL 1 (best) BASIC14.13□□□□□ -0.15
ATG4BQ9Y4P1 AC078819.1-201ENST00000547454 765 ntBASIC14.13□□□□□ -0.15
ATG4BQ9Y4P1 AC012085.1-201ENST00000548270 765 ntBASIC14.13□□□□□ -0.15
ATG4BQ9Y4P1 KRT90P-201ENST00000549264 1064 ntBASIC14.13□□□□□ -0.15
ATG4BQ9Y4P1 AL132711.1-201ENST00000557546 722 ntTSL 3 BASIC14.13□□□□□ -0.15
ATG4BQ9Y4P1 APRT-204ENST00000563655 709 ntTSL 5 BASIC14.13□□□□□ -0.15
ATG4BQ9Y4P1 MAP2K6-209ENST00000613873 1509 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
ATG4BQ9Y4P1 TMEM51-204ENST00000428417 1942 ntAPPRIS P1 TSL 3 BASIC14.13□□□□□ -0.15
ATG4BQ9Y4P1 FDFT1-224ENST00000618539 2660 ntAPPRIS P1 TSL 5 BASIC14.13□□□□□ -0.15
ATG4BQ9Y4P1 AC018716.2-201ENST00000528390 2597 ntTSL 2 BASIC14.13□□□□□ -0.15
ATG4BQ9Y4P1 SLC7A4-202ENST00000403586 2307 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
ATG4BQ9Y4P1 SERINC2-206ENST00000536859 2072 ntTSL 2 BASIC14.13□□□□□ -0.15
ATG4BQ9Y4P1 PGBD5-202ENST00000525115 1569 ntTSL 2 BASIC14.13□□□□□ -0.15
ATG4BQ9Y4P1 PSMC5-209ENST00000580864 1552 ntTSL 5 BASIC14.13□□□□□ -0.15
ATG4BQ9Y4P1 ARPP19-202ENST00000561650 3245 ntTSL 2 BASIC14.13□□□□□ -0.15
ATG4BQ9Y4P1 HDAC11-201ENST00000295757 2960 ntAPPRIS P3 TSL 1 (best) BASIC14.13□□□□□ -0.15
ATG4BQ9Y4P1 SPRY4-202ENST00000434127 2379 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
ATG4BQ9Y4P1 MYH6-201ENST00000356287 5871 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
ATG4BQ9Y4P1 NAA60-229ENST00000575076 2531 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
ATG4BQ9Y4P1 TMPRSS6-204ENST00000406856 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC14.12□□□□□ -0.15
ATG4BQ9Y4P1 FAM189A2-201ENST00000257515 2423 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
ATG4BQ9Y4P1 BIRC5-203ENST00000374948 2446 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
ATG4BQ9Y4P1 RUBCNL-212ENST00000631139 1948 ntAPPRIS ALT2 TSL 2 BASIC14.12□□□□□ -0.15
ATG4BQ9Y4P1 TEAD3-202ENST00000402886 2729 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
ATG4BQ9Y4P1 MCL1-202ENST00000369026 3932 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
ATG4BQ9Y4P1 ATP2A3-202ENST00000352011 3274 ntTSL 5 BASIC14.12□□□□□ -0.15
ATG4BQ9Y4P1 TPM3-208ENST00000341485 2063 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
ATG4BQ9Y4P1 RRM1-214ENST00000534285 2075 ntTSL 5 BASIC14.12□□□□□ -0.15
ATG4BQ9Y4P1 SOD1-201ENST00000270142 966 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
ATG4BQ9Y4P1 PRTFDC1-203ENST00000376378 747 ntTSL 2 BASIC14.12□□□□□ -0.15
ATG4BQ9Y4P1 UCHL3-201ENST00000377595 844 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
ATG4BQ9Y4P1 IFT20-203ENST00000395418 825 ntAPPRIS P4 TSL 1 (best) BASIC14.12□□□□□ -0.15
ATG4BQ9Y4P1 MPV17-205ENST00000402310 906 ntTSL 5 BASIC14.12□□□□□ -0.15
ATG4BQ9Y4P1 AL583835.2-202ENST00000421363 1104 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
ATG4BQ9Y4P1 AL354761.2-202ENST00000430816 546 ntAPPRIS P1 TSL 5 BASIC14.12□□□□□ -0.15
ATG4BQ9Y4P1 AC072022.1-201ENST00000450760 1144 ntAPPRIS P1 TSL 3 BASIC14.12□□□□□ -0.15
ATG4BQ9Y4P1 IP6K1-203ENST00000460540 1260 ntTSL 2 BASIC14.12□□□□□ -0.15
ATG4BQ9Y4P1 AL121845.2-201ENST00000467211 252 ntAPPRIS P1 TSL 3 BASIC14.12□□□□□ -0.15
ATG4BQ9Y4P1 AC131206.1-201ENST00000538078 1211 ntBASIC14.12□□□□□ -0.15
ATG4BQ9Y4P1 COX14-203ENST00000550487 739 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
ATG4BQ9Y4P1 AC008969.1-205ENST00000553254 876 ntTSL 2 BASIC14.12□□□□□ -0.15
ATG4BQ9Y4P1 RORA-AS1-205ENST00000559824 761 ntTSL 3 BASIC14.12□□□□□ -0.15
ATG4BQ9Y4P1 AC004637.1-201ENST00000586675 482 ntTSL 3 BASIC14.12□□□□□ -0.15
Retrieved 100 of 98,524 protein–RNA pairs in 35.7 ms