Protein–RNA interactions for Protein: Q9BRP4

PAAF1, Proteasomal ATPase-associated factor 1, humanhuman

Predictions only

Length 392 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PAAF1Q9BRP4 ANXA6-211ENST00000521512 1793 ntTSL 5 BASIC15.77■□□□□ 0.12
PAAF1Q9BRP4 GGT6-204ENST00000574154 2482 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
PAAF1Q9BRP4 CUX1-211ENST00000546411 4212 ntAPPRIS ALT2 TSL 5 BASIC15.77■□□□□ 0.12
PAAF1Q9BRP4 HSPB7-202ENST00000375718 2415 ntTSL 2 BASIC15.77■□□□□ 0.12
PAAF1Q9BRP4 GK-204ENST00000378945 2063 ntAPPRIS P3 TSL 1 (best) BASIC15.77■□□□□ 0.12
PAAF1Q9BRP4 KRT8P28-201ENST00000433288 1390 ntBASIC15.77■□□□□ 0.12
PAAF1Q9BRP4 PTBP1-202ENST00000350092 3069 ntAPPRIS ALT1 TSL 1 (best) BASIC15.77■□□□□ 0.12
PAAF1Q9BRP4 EPHX2-209ENST00000521780 2038 ntTSL 2 BASIC15.77■□□□□ 0.12
PAAF1Q9BRP4 C11orf16-202ENST00000525780 1685 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
PAAF1Q9BRP4 NAXD-202ENST00000424185 2311 ntTSL 2 BASIC15.77■□□□□ 0.12
PAAF1Q9BRP4 PKD2L2-205ENST00000508638 2333 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
PAAF1Q9BRP4 ZNF586-202ENST00000396150 1977 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
PAAF1Q9BRP4 ERG28-201ENST00000256319 2633 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
PAAF1Q9BRP4 MAGEB2-201ENST00000378988 1610 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
PAAF1Q9BRP4 GAD1-203ENST00000375272 1252 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
PAAF1Q9BRP4 RAB1A-201ENST00000398529 1198 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
PAAF1Q9BRP4 PTPA-217ENST00000434095 870 ntTSL 2 BASIC15.77■□□□□ 0.12
PAAF1Q9BRP4 AC005234.1-201ENST00000457851 434 ntTSL 3 BASIC15.77■□□□□ 0.12
PAAF1Q9BRP4 SUPT4H1P2-201ENST00000501248 353 ntBASIC15.77■□□□□ 0.12
PAAF1Q9BRP4 AC008406.1-201ENST00000509530 541 ntTSL 3 BASIC15.77■□□□□ 0.12
PAAF1Q9BRP4 IFITM3-202ENST00000526811 543 ntAPPRIS ALT1 TSL 5 BASIC15.77■□□□□ 0.12
PAAF1Q9BRP4 CATSPERZ-203ENST00000539943 917 ntAPPRIS ALT2 TSL 2 BASIC15.77■□□□□ 0.12
PAAF1Q9BRP4 TGIF1-218ENST00000551402 1089 ntTSL 2 BASIC15.77■□□□□ 0.12
PAAF1Q9BRP4 AC009065.3-201ENST00000562027 627 ntTSL 5 BASIC15.77■□□□□ 0.12
PAAF1Q9BRP4 TBC1D16-203ENST00000570373 961 ntTSL 5 BASIC15.77■□□□□ 0.12
PAAF1Q9BRP4 MIR3907-201ENST00000579424 151 ntBASIC15.77■□□□□ 0.12
PAAF1Q9BRP4 TLDC2-203ENST00000602922 1179 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
PAAF1Q9BRP4 AL157813.1-201ENST00000612996 587 ntBASIC15.77■□□□□ 0.12
PAAF1Q9BRP4 LINC01517-203ENST00000616194 908 ntTSL 5 BASIC15.77■□□□□ 0.12
PAAF1Q9BRP4 CYP1B1-AS1-221ENST00000627172 995 ntTSL 5 BASIC15.77■□□□□ 0.12
PAAF1Q9BRP4 PTBP1-204ENST00000394601 3185 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
PAAF1Q9BRP4 ZXDA-201ENST00000358697 4113 ntAPPRIS P1 BASIC15.77■□□□□ 0.12
PAAF1Q9BRP4 NEK2-201ENST00000366998 1865 ntTSL 1 (best) BASIC15.77■□□□□ 0.11
PAAF1Q9BRP4 NTRK2-207ENST00000376214 5608 ntAPPRIS P3 TSL 5 BASIC15.77■□□□□ 0.11
PAAF1Q9BRP4 PPP1R3G-201ENST00000405617 4907 ntAPPRIS P1 BASIC15.77■□□□□ 0.11
PAAF1Q9BRP4 ASGR1-201ENST00000269299 1504 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
PAAF1Q9BRP4 ARID1A-205ENST00000457599 6268 ntAPPRIS ALT2 TSL 5 BASIC15.77■□□□□ 0.11
PAAF1Q9BRP4 HGNC:18790-202ENST00000421177 4172 ntAPPRIS P1 TSL 5 BASIC15.77■□□□□ 0.11
PAAF1Q9BRP4 MED15-202ENST00000292733 3252 ntAPPRIS P3 TSL 1 (best) BASIC15.77■□□□□ 0.11
PAAF1Q9BRP4 KHK-201ENST00000260598 2397 ntAPPRIS P5 TSL 2 BASIC15.77■□□□□ 0.11
PAAF1Q9BRP4 GPC3-202ENST00000394299 2379 ntTSL 1 (best) BASIC15.77■□□□□ 0.11
PAAF1Q9BRP4 SCAMP4-202ENST00000409472 2394 ntTSL 2 BASIC15.77■□□□□ 0.11
PAAF1Q9BRP4 AC018442.1-201ENST00000421439 2061 ntBASIC15.77■□□□□ 0.11
PAAF1Q9BRP4 TUBB-206ENST00000330914 2632 ntTSL 2 BASIC15.77■□□□□ 0.11
PAAF1Q9BRP4 CNKSR1-201ENST00000361530 2625 ntAPPRIS P3 TSL 1 (best) BASIC15.77■□□□□ 0.11
PAAF1Q9BRP4 PCNP-201ENST00000265260 2342 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
PAAF1Q9BRP4 LEF1-202ENST00000379951 3477 ntTSL 1 (best) BASIC15.77■□□□□ 0.11
PAAF1Q9BRP4 CLCN2-202ENST00000344937 3187 ntAPPRIS ALT2 TSL 1 (best) BASIC15.77■□□□□ 0.11
PAAF1Q9BRP4 PLCXD2-204ENST00000477665 1721 ntTSL 1 (best) BASIC15.77■□□□□ 0.11
PAAF1Q9BRP4 MAGED2-201ENST00000218439 1958 ntAPPRIS P2 TSL 5 BASIC15.76■□□□□ 0.11
PAAF1Q9BRP4 PNPLA3-203ENST00000423180 2222 ntTSL 2 BASIC15.76■□□□□ 0.11
PAAF1Q9BRP4 MAD1L1-202ENST00000399654 2762 ntAPPRIS P1 TSL 5 BASIC15.76■□□□□ 0.11
PAAF1Q9BRP4 TBC1D8-202ENST00000409318 3803 ntTSL 5 BASIC15.76■□□□□ 0.11
PAAF1Q9BRP4 HVCN1-202ENST00000356742 2189 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
PAAF1Q9BRP4 SLC4A3-202ENST00000317151 4069 ntAPPRIS P1 TSL 5 BASIC15.76■□□□□ 0.11
PAAF1Q9BRP4 COG5-203ENST00000393603 5418 ntAPPRIS ALT2 TSL 1 (best) BASIC15.76■□□□□ 0.11
PAAF1Q9BRP4 NTM-205ENST00000425719 1607 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
PAAF1Q9BRP4 BRAT1-201ENST00000340611 2915 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
PAAF1Q9BRP4 TRIM3-215ENST00000639856 2137 ntTSL 5 BASIC15.76■□□□□ 0.11
PAAF1Q9BRP4 ADAMTSL1-204ENST00000380545 1562 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
PAAF1Q9BRP4 DYRK1A-203ENST00000398956 1590 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
PAAF1Q9BRP4 ISCA2-204ENST00000556816 2626 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
PAAF1Q9BRP4 PLPPR4-202ENST00000370185 5369 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
PAAF1Q9BRP4 MYB-201ENST00000316528 3571 ntTSL 5 BASIC15.76■□□□□ 0.11
PAAF1Q9BRP4 MYB-241ENST00000616088 3573 ntTSL 5 BASIC15.76■□□□□ 0.11
PAAF1Q9BRP4 BOLA3-201ENST00000295326 444 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
PAAF1Q9BRP4 DPCD-202ENST00000370151 858 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
PAAF1Q9BRP4 COL5A1-AS1-201ENST00000371813 336 ntTSL 2 BASIC15.76■□□□□ 0.11
PAAF1Q9BRP4 UQCRQ-203ENST00000378670 839 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
PAAF1Q9BRP4 AL645608.5-201ENST00000398216 443 ntTSL 3 BASIC15.76■□□□□ 0.11
PAAF1Q9BRP4 TEX33-202ENST00000402860 986 ntAPPRIS P3 TSL 1 (best) BASIC15.76■□□□□ 0.11
PAAF1Q9BRP4 CD8A-204ENST00000409781 597 ntAPPRIS ALT2 TSL 5 BASIC15.76■□□□□ 0.11
PAAF1Q9BRP4 AC079807.2-203ENST00000417692 656 ntTSL 2 BASIC15.76■□□□□ 0.11
PAAF1Q9BRP4 Z82214.1-201ENST00000419643 988 ntTSL 3 BASIC15.76■□□□□ 0.11
PAAF1Q9BRP4 DLGAP4-AS1-202ENST00000433238 593 ntTSL 3 BASIC15.76■□□□□ 0.11
PAAF1Q9BRP4 LAMA4-209ENST00000453937 645 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
PAAF1Q9BRP4 AC135178.1-201ENST00000458568 537 ntTSL 3 BASIC15.76■□□□□ 0.11
PAAF1Q9BRP4 AC116345.2-201ENST00000512837 523 ntBASIC15.76■□□□□ 0.11
PAAF1Q9BRP4 AP001547.1-201ENST00000527440 374 ntTSL 3 BASIC15.76■□□□□ 0.11
PAAF1Q9BRP4 AL021997.3-201ENST00000621053 557 ntAPPRIS P1 TSL 4 BASIC15.76■□□□□ 0.11
PAAF1Q9BRP4 NAP1L6-202ENST00000641404 1222 ntBASIC15.76■□□□□ 0.11
PAAF1Q9BRP4 RGS6-217ENST00000555571 1764 ntAPPRIS P3 TSL 1 (best) BASIC15.76■□□□□ 0.11
PAAF1Q9BRP4 RUSC1-202ENST00000368347 2503 ntAPPRIS ALT2 TSL 1 (best) BASIC15.76■□□□□ 0.11
PAAF1Q9BRP4 GBA2-202ENST00000378094 3757 ntAPPRIS ALT2 TSL 1 (best) BASIC15.76■□□□□ 0.11
PAAF1Q9BRP4 DNAH14-204ENST00000366849 2215 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
PAAF1Q9BRP4 SLC51A-201ENST00000296327 1463 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
PAAF1Q9BRP4 SLC41A3-211ENST00000508835 1480 ntTSL 2 BASIC15.76■□□□□ 0.11
PAAF1Q9BRP4 MANSC1-202ENST00000535902 5831 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
PAAF1Q9BRP4 IQCF3-205ENST00000456080 1685 ntAPPRIS P1 TSL 2 BASIC15.76■□□□□ 0.11
PAAF1Q9BRP4 UBE2D3-207ENST00000394801 2368 ntAPPRIS ALT1 TSL 1 (best) BASIC15.76■□□□□ 0.11
PAAF1Q9BRP4 FETUB-207ENST00000450521 1410 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
PAAF1Q9BRP4 MIR762HG-203ENST00000570025 1429 ntTSL 2 BASIC15.76■□□□□ 0.11
PAAF1Q9BRP4 STRA6-205ENST00000432245 1889 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
PAAF1Q9BRP4 TEN1-CDK3-202ENST00000569284 3287 ntAPPRIS P1 TSL 2 BASIC15.76■□□□□ 0.11
PAAF1Q9BRP4 HDAC5-201ENST00000225983 5326 ntAPPRIS P3 TSL 5 BASIC15.75■□□□□ 0.11
PAAF1Q9BRP4 RGS3-201ENST00000317613 2542 ntTSL 2 BASIC15.75■□□□□ 0.11
PAAF1Q9BRP4 MAP3K10-201ENST00000253055 3436 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
PAAF1Q9BRP4 SPO11-203ENST00000371263 1834 ntAPPRIS P4 TSL 1 (best) BASIC15.75■□□□□ 0.11
PAAF1Q9BRP4 SCRIB-202ENST00000356994 5218 ntAPPRIS P4 TSL 2 BASIC15.75■□□□□ 0.11
PAAF1Q9BRP4 SYT5-207ENST00000590851 3619 ntTSL 2 BASIC15.75■□□□□ 0.11
Retrieved 100 of 98,524 protein–RNA pairs in 80.8 ms