Protein–RNA interactions for Protein: Q9BQI4

CCDC3, Coiled-coil domain-containing protein 3, humanhuman

Predictions only

Length 270 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3Q9BQI4 AC105129.2-201ENST00000559536 390 ntBASIC14.57□□□□□ -0.08
CCDC3Q9BQI4 AC079328.1-201ENST00000560358 952 ntBASIC14.57□□□□□ -0.08
CCDC3Q9BQI4 C15orf40-211ENST00000565712 559 ntTSL 3 BASIC14.57□□□□□ -0.08
CCDC3Q9BQI4 LINC00621-201ENST00000577004 1177 ntTSL 4 BASIC14.57□□□□□ -0.08
CCDC3Q9BQI4 MIR3619-201ENST00000579667 83 ntBASIC14.57□□□□□ -0.08
CCDC3Q9BQI4 FXYD6-217ENST00000584394 669 ntTSL 3 BASIC14.57□□□□□ -0.08
CCDC3Q9BQI4 FBXL12-204ENST00000586469 544 ntTSL 2 BASIC14.57□□□□□ -0.08
CCDC3Q9BQI4 MEF2C-227ENST00000626391 1182 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
CCDC3Q9BQI4 MEF2C-231ENST00000628656 1254 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
CCDC3Q9BQI4 RAI2-206ENST00000545871 2421 ntAPPRIS P1 TSL 4 BASIC14.57□□□□□ -0.08
CCDC3Q9BQI4 CROT-201ENST00000331536 3175 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
CCDC3Q9BQI4 AL360270.3-201ENST00000609118 1348 ntBASIC14.57□□□□□ -0.08
CCDC3Q9BQI4 AFG3L2-201ENST00000269143 3247 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
CCDC3Q9BQI4 MAGEA4-205ENST00000393920 1721 ntAPPRIS P1 TSL 2 BASIC14.57□□□□□ -0.08
CCDC3Q9BQI4 PPIL6-202ENST00000424445 4031 ntTSL 5 BASIC14.57□□□□□ -0.08
CCDC3Q9BQI4 HS1BP3-203ENST00000406618 1375 ntTSL 2 BASIC14.57□□□□□ -0.08
CCDC3Q9BQI4 KRT8P29-201ENST00000420409 1371 ntBASIC14.57□□□□□ -0.08
CCDC3Q9BQI4 FAM180B-201ENST00000538490 1388 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
CCDC3Q9BQI4 VSX2-201ENST00000261980 2995 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
CCDC3Q9BQI4 SLC6A20-202ENST00000358525 5423 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
CCDC3Q9BQI4 RNF183-201ENST00000297894 1830 ntAPPRIS P1 TSL 2 BASIC14.57□□□□□ -0.08
CCDC3Q9BQI4 AC018755.2-201ENST00000599649 1837 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
CCDC3Q9BQI4 METTL6-201ENST00000383789 1413 ntTSL 2 BASIC14.57□□□□□ -0.08
CCDC3Q9BQI4 VSTM2A-204ENST00000407838 3112 ntAPPRIS P1 TSL 3 BASIC14.57□□□□□ -0.08
CCDC3Q9BQI4 JADE2-201ENST00000282605 2748 ntAPPRIS P1 TSL 2 BASIC14.57□□□□□ -0.08
CCDC3Q9BQI4 NFYC-205ENST00000372654 1455 ntAPPRIS P3 TSL 1 (best) BASIC14.57□□□□□ -0.08
CCDC3Q9BQI4 MUC20-201ENST00000320736 1916 ntAPPRIS ALT2 TSL 5 BASIC14.56□□□□□ -0.08
CCDC3Q9BQI4 THAP10-201ENST00000249861 2399 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
CCDC3Q9BQI4 TBX10-201ENST00000335385 1548 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
CCDC3Q9BQI4 ZNF197-203ENST00000383744 1989 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
CCDC3Q9BQI4 ALOX15-205ENST00000574640 2422 ntTSL 2 BASIC14.56□□□□□ -0.08
CCDC3Q9BQI4 ADGRG2-207ENST00000379869 4768 ntAPPRIS ALT2 TSL 1 (best) BASIC14.56□□□□□ -0.08
CCDC3Q9BQI4 SLC12A8-207ENST00000469902 2989 ntAPPRIS P1 TSL 2 BASIC14.56□□□□□ -0.08
CCDC3Q9BQI4 SPG21-203ENST00000433215 1613 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
CCDC3Q9BQI4 ABCB6-201ENST00000265316 3016 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
CCDC3Q9BQI4 FAM149B1-201ENST00000242505 5408 ntAPPRIS P1 TSL 5 BASIC14.56□□□□□ -0.08
CCDC3Q9BQI4 MYB-201ENST00000316528 3571 ntTSL 5 BASIC14.56□□□□□ -0.08
CCDC3Q9BQI4 MYB-241ENST00000616088 3573 ntTSL 5 BASIC14.56□□□□□ -0.08
CCDC3Q9BQI4 CCNE1-203ENST00000444983 1680 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
CCDC3Q9BQI4 CHTF18-205ENST00000455171 3172 ntAPPRIS ALT2 TSL 2 BASIC14.56□□□□□ -0.08
CCDC3Q9BQI4 KCTD1-203ENST00000417602 1705 ntAPPRIS P1 TSL 5 BASIC14.56□□□□□ -0.08
CCDC3Q9BQI4 ZNF764-201ENST00000252797 2738 ntAPPRIS P3 TSL 1 (best) BASIC14.56□□□□□ -0.08
CCDC3Q9BQI4 MGAT1-201ENST00000307826 2761 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
CCDC3Q9BQI4 EEPD1-205ENST00000534978 2769 ntAPPRIS P1 TSL 2 BASIC14.56□□□□□ -0.08
CCDC3Q9BQI4 AQP10-203ENST00000484864 2262 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
CCDC3Q9BQI4 MEF2C-AS1-210ENST00000514011 1754 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
CCDC3Q9BQI4 RDH5-201ENST00000257895 1269 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
CCDC3Q9BQI4 SRP14-201ENST00000267884 1077 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
CCDC3Q9BQI4 C9orf24-201ENST00000297623 1151 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
CCDC3Q9BQI4 C9orf24-205ENST00000379133 712 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
CCDC3Q9BQI4 IGLC7-201ENST00000390331 441 ntAPPRIS P1 BASIC14.56□□□□□ -0.08
CCDC3Q9BQI4 LENEP-202ENST00000392487 555 ntAPPRIS P1 BASIC14.56□□□□□ -0.08
CCDC3Q9BQI4 ELK2AP-201ENST00000392510 1007 ntBASIC14.56□□□□□ -0.08
CCDC3Q9BQI4 MRPL23-204ENST00000397297 613 ntTSL 2 BASIC14.56□□□□□ -0.08
CCDC3Q9BQI4 AL731661.1-201ENST00000438217 758 ntTSL 5 BASIC14.56□□□□□ -0.08
CCDC3Q9BQI4 DGUOK-AS1-202ENST00000439192 563 ntTSL 2 BASIC14.56□□□□□ -0.08
CCDC3Q9BQI4 TSACC-208ENST00000481479 741 ntTSL 2 BASIC14.56□□□□□ -0.08
CCDC3Q9BQI4 SDHD-202ENST00000525291 790 ntTSL 3 BASIC14.56□□□□□ -0.08
CCDC3Q9BQI4 CCKBR-204ENST00000531712 463 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
CCDC3Q9BQI4 AC067930.5-201ENST00000531730 1173 ntTSL 2 BASIC14.56□□□□□ -0.08
CCDC3Q9BQI4 RDH5-204ENST00000548082 1259 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
CCDC3Q9BQI4 ZNF385A-213ENST00000551771 1111 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
CCDC3Q9BQI4 CCDC144NL-AS1-209ENST00000577860 884 ntTSL 5 BASIC14.56□□□□□ -0.08
CCDC3Q9BQI4 AP000229.1-202ENST00000609365 559 ntTSL 4 BASIC14.56□□□□□ -0.08
CCDC3Q9BQI4 ZCCHC4-206ENST00000612982 938 ntTSL 5 BASIC14.56□□□□□ -0.08
CCDC3Q9BQI4 AL023803.2-201ENST00000620080 638 ntBASIC14.56□□□□□ -0.08
CCDC3Q9BQI4 ZNF821-203ENST00000446827 1822 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
CCDC3Q9BQI4 LILRB5-202ENST00000345866 1864 ntTSL 2 BASIC14.56□□□□□ -0.08
CCDC3Q9BQI4 PITX2-205ENST00000394598 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC14.56□□□□□ -0.08
CCDC3Q9BQI4 CALCOCO2-211ENST00000508679 1396 ntTSL 2 BASIC14.56□□□□□ -0.08
CCDC3Q9BQI4 KCNJ5-203ENST00000533599 1350 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
CCDC3Q9BQI4 WASH3P-207ENST00000560956 1394 ntBASIC14.56□□□□□ -0.08
CCDC3Q9BQI4 NCAPH2-201ENST00000299821 1996 ntAPPRIS ALT2 TSL 1 (best) BASIC14.56□□□□□ -0.08
CCDC3Q9BQI4 KATNA1-203ENST00000367411 1984 ntAPPRIS P1 TSL 2 BASIC14.56□□□□□ -0.08
CCDC3Q9BQI4 MRPL49-201ENST00000279242 2019 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
CCDC3Q9BQI4 AL162457.1-201ENST00000317652 2000 ntTSL 2 BASIC14.56□□□□□ -0.08
CCDC3Q9BQI4 ZNRD1ASP-217ENST00000437417 1497 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
CCDC3Q9BQI4 CES4A-203ENST00000535696 1472 ntTSL 2 BASIC14.56□□□□□ -0.08
CCDC3Q9BQI4 TLDC2-201ENST00000217320 2083 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
CCDC3Q9BQI4 GABRG3-208ENST00000615808 10768 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
CCDC3Q9BQI4 IVL-201ENST00000368764 2153 ntAPPRIS P1 TSL 2 BASIC14.56□□□□□ -0.08
CCDC3Q9BQI4 MST1L-201ENST00000442552 2185 ntBASIC14.56□□□□□ -0.08
CCDC3Q9BQI4 FUK-201ENST00000288078 4081 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
CCDC3Q9BQI4 SPIN3-224ENST00000639583 2245 ntTSL 5 BASIC14.56□□□□□ -0.08
CCDC3Q9BQI4 ANK1-205ENST00000347528 8237 ntAPPRIS P4 TSL 1 (best) BASIC14.55□□□□□ -0.08
CCDC3Q9BQI4 MAD1L1-203ENST00000402746 2355 ntTSL 2 BASIC14.55□□□□□ -0.08
CCDC3Q9BQI4 MFSD1-203ENST00000415822 2423 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
CCDC3Q9BQI4 EPS8L2-218ENST00000530636 2469 ntAPPRIS P2 TSL 1 (best) BASIC14.55□□□□□ -0.08
CCDC3Q9BQI4 RASAL1-207ENST00000548055 2502 ntAPPRIS ALT2 TSL 1 (best) BASIC14.55□□□□□ -0.08
CCDC3Q9BQI4 TGFB1I1-202ENST00000394858 1803 ntAPPRIS P3 TSL 1 (best) BASIC14.55□□□□□ -0.08
CCDC3Q9BQI4 AP4M1-205ENST00000422582 1814 ntTSL 2 BASIC14.55□□□□□ -0.08
CCDC3Q9BQI4 LINC00900-201ENST00000499809 3322 ntTSL 2 BASIC14.55□□□□□ -0.08
CCDC3Q9BQI4 GHDC-201ENST00000301671 2650 ntAPPRIS P1 TSL 2 BASIC14.55□□□□□ -0.08
CCDC3Q9BQI4 TBP-202ENST00000392092 1903 ntAPPRIS P3 TSL 1 (best) BASIC14.55□□□□□ -0.08
CCDC3Q9BQI4 CFAP46-202ENST00000368586 8278 ntAPPRIS P2 TSL 5 BASIC14.55□□□□□ -0.08
CCDC3Q9BQI4 DNASE2-201ENST00000222219 1955 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
CCDC3Q9BQI4 CCDC90B-213ENST00000529611 1986 ntTSL 2 BASIC14.55□□□□□ -0.08
CCDC3Q9BQI4 PRPF40B-201ENST00000261897 3602 ntAPPRIS ALT2 TSL 1 (best) BASIC14.55□□□□□ -0.08
CCDC3Q9BQI4 BOLA3-201ENST00000295326 444 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
CCDC3Q9BQI4 SDCCAG3P2-201ENST00000326105 1023 ntBASIC14.55□□□□□ -0.08
Retrieved 100 of 98,524 protein–RNA pairs in 39.2 ms