Protein–RNA interactions for Protein: Q96K76

USP47, Ubiquitin carboxyl-terminal hydrolase 47, humanhuman

Predictions only

Length 1,375 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP47Q96K76 SLC38A5-213ENST00000620913 1993 ntAPPRIS P1 TSL 5 BASIC20.68■□□□□ 0.9
USP47Q96K76 PRSS8-201ENST00000317508 1872 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
USP47Q96K76 ZNF7-203ENST00000525266 1874 ntTSL 2 BASIC20.68■□□□□ 0.9
USP47Q96K76 HTR3E-202ENST00000415389 2139 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
USP47Q96K76 RPL13-204ENST00000452368 1455 ntTSL 2 BASIC20.68■□□□□ 0.9
USP47Q96K76 ELAVL1-205ENST00000596459 1473 ntAPPRIS P1 TSL 2 BASIC20.68■□□□□ 0.9
USP47Q96K76 MAN2A2-216ENST00000559717 6704 ntAPPRIS P1 TSL 2 BASIC20.68■□□□□ 0.9
USP47Q96K76 KRT8P29-201ENST00000420409 1371 ntBASIC20.68■□□□□ 0.9
USP47Q96K76 TCL1A-203ENST00000554012 1391 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
USP47Q96K76 NFATC2-206ENST00000609943 5690 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
USP47Q96K76 GALNTL6-205ENST00000511251 2905 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
USP47Q96K76 SST-201ENST00000287641 618 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
USP47Q96K76 HNRNPA1P27-201ENST00000412087 955 ntBASIC20.68■□□□□ 0.9
USP47Q96K76 AC053503.1-201ENST00000429882 519 ntTSL 3 BASIC20.68■□□□□ 0.9
USP47Q96K76 VDAC1P1-201ENST00000439229 848 ntBASIC20.68■□□□□ 0.9
USP47Q96K76 EMC4-209ENST00000559421 497 ntTSL 2 BASIC20.68■□□□□ 0.9
USP47Q96K76 C15orf40-211ENST00000565712 559 ntTSL 3 BASIC20.68■□□□□ 0.9
USP47Q96K76 AC005962.1-201ENST00000584100 773 ntBASIC20.68■□□□□ 0.9
USP47Q96K76 AC005324.6-201ENST00000587972 613 ntBASIC20.68■□□□□ 0.9
USP47Q96K76 AC243960.2-201ENST00000600996 747 ntBASIC20.68■□□□□ 0.9
USP47Q96K76 AC007663.3-201ENST00000609632 465 ntBASIC20.68■□□□□ 0.9
USP47Q96K76 STPG3-204ENST00000611378 1015 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
USP47Q96K76 STUM-202ENST00000366789 4093 ntAPPRIS ALT1 TSL 5 BASIC20.68■□□□□ 0.9
USP47Q96K76 MAGED4B-202ENST00000360134 2510 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
USP47Q96K76 TMEM201-202ENST00000340381 3776 ntAPPRIS P1 TSL 5 BASIC20.68■□□□□ 0.9
USP47Q96K76 ARL15-201ENST00000502271 3248 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
USP47Q96K76 SCFD2-201ENST00000388940 2221 ntTSL 2 BASIC20.68■□□□□ 0.9
USP47Q96K76 CBX3-201ENST00000337620 2128 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
USP47Q96K76 MCHR2-202ENST00000369212 1311 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
USP47Q96K76 MAP4K5-201ENST00000013125 4354 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
USP47Q96K76 C9orf172-201ENST00000436881 4387 ntAPPRIS P1 BASIC20.67■□□□□ 0.9
USP47Q96K76 MVK-214ENST00000629016 1591 ntTSL 5 BASIC20.67■□□□□ 0.9
USP47Q96K76 CYP4B1-201ENST00000271153 2171 ntAPPRIS P3 TSL 1 (best) BASIC20.67■□□□□ 0.9
USP47Q96K76 PPP3CB-201ENST00000342558 2418 ntTSL 5 BASIC20.67■□□□□ 0.9
USP47Q96K76 PPP4R4-201ENST00000304338 3868 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
USP47Q96K76 MDGA2-202ENST00000399232 5075 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
USP47Q96K76 PSMC3-212ENST00000602866 1373 ntAPPRIS ALT1 TSL 1 (best) BASIC20.67■□□□□ 0.9
USP47Q96K76 AC013472.1-203ENST00000380387 1966 ntTSL 4 BASIC20.67■□□□□ 0.9
USP47Q96K76 BLOC1S6-212ENST00000566753 1996 ntTSL 2 BASIC20.67■□□□□ 0.9
USP47Q96K76 FP565260.6-204ENST00000620528 1640 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
USP47Q96K76 PRKD2-201ENST00000291281 3070 ntAPPRIS P3 TSL 1 (best) BASIC20.67■□□□□ 0.9
USP47Q96K76 RAF1-205ENST00000442415 3085 ntTSL 5 BASIC20.67■□□□□ 0.9
USP47Q96K76 OSBPL5-210ENST00000525498 2733 ntTSL 2 BASIC20.67■□□□□ 0.9
USP47Q96K76 RASA3-IT1-201ENST00000454005 380 ntTSL 3 BASIC20.67■□□□□ 0.9
USP47Q96K76 SBSN-202ENST00000518157 957 ntAPPRIS P3 TSL 1 (best) BASIC20.67■□□□□ 0.9
USP47Q96K76 MRPL51-202ENST00000537701 601 ntTSL 2 BASIC20.67■□□□□ 0.9
USP47Q96K76 CCDC86-203ENST00000545580 697 ntAPPRIS ALT2 TSL 3 BASIC20.67■□□□□ 0.9
USP47Q96K76 AC007376.2-201ENST00000556271 540 ntTSL 3 BASIC20.67■□□□□ 0.9
USP47Q96K76 BNIP3P13-201ENST00000599968 566 ntBASIC20.67■□□□□ 0.9
USP47Q96K76 AL118558.3-201ENST00000607414 1079 ntBASIC20.67■□□□□ 0.9
USP47Q96K76 AC244517.4-201ENST00000624549 580 ntTSL 4 BASIC20.67■□□□□ 0.9
USP47Q96K76 CYP1B1-AS1-221ENST00000627172 995 ntTSL 5 BASIC20.67■□□□□ 0.9
USP47Q96K76 AL139099.5-201ENST00000635274 300 ntBASIC20.67■□□□□ 0.9
USP47Q96K76 GRK6-203ENST00000393576 2792 ntTSL 5 BASIC20.67■□□□□ 0.9
USP47Q96K76 AC015802.1-201ENST00000588104 1449 ntBASIC20.67■□□□□ 0.9
USP47Q96K76 MBLAC2-202ENST00000514906 1936 ntBASIC20.67■□□□□ 0.9
USP47Q96K76 PRNP-201ENST00000379440 2657 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
USP47Q96K76 SCRIB-202ENST00000356994 5218 ntAPPRIS P4 TSL 2 BASIC20.67■□□□□ 0.9
USP47Q96K76 SAMD4A-204ENST00000554335 3003 ntAPPRIS P1 TSL 5 BASIC20.66■□□□□ 0.9
USP47Q96K76 AC055854.1-203ENST00000521141 1630 ntTSL 5 BASIC20.66■□□□□ 0.9
USP47Q96K76 RNPS1-216ENST00000565678 2298 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
USP47Q96K76 SLC52A3-202ENST00000381944 3060 ntTSL 2 BASIC20.66■□□□□ 0.9
USP47Q96K76 LCMT1-203ENST00000399069 1368 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
USP47Q96K76 TACC1-202ENST00000317827 7802 ntAPPRIS P3 TSL 1 (best) BASIC20.66■□□□□ 0.9
USP47Q96K76 PRPF40B-201ENST00000261897 3602 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
USP47Q96K76 CLEC18A-201ENST00000288040 2155 ntAPPRIS P2 TSL 1 (best) BASIC20.66■□□□□ 0.9
USP47Q96K76 IMPDH1-203ENST00000354269 2580 ntTSL 2 BASIC20.66■□□□□ 0.9
USP47Q96K76 CATSPERZ-201ENST00000328404 743 ntAPPRIS P5 TSL 1 (best) BASIC20.66■□□□□ 0.9
USP47Q96K76 UROS-203ENST00000368786 1216 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
USP47Q96K76 LMO4-201ENST00000370542 1260 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
USP47Q96K76 AC007952.1-202ENST00000399083 1173 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
USP47Q96K76 MIR1247-201ENST00000408206 136 ntBASIC20.66■□□□□ 0.9
USP47Q96K76 ZNF564-202ENST00000416136 255 ntTSL 3 BASIC20.66■□□□□ 0.9
USP47Q96K76 AC018685.1-201ENST00000457813 368 ntTSL 3 BASIC20.66■□□□□ 0.9
USP47Q96K76 AC006122.1-201ENST00000493323 440 ntBASIC20.66■□□□□ 0.9
USP47Q96K76 IGHVIII-5-2-201ENST00000522505 261 ntBASIC20.66■□□□□ 0.9
USP47Q96K76 ACYP1-206ENST00000555694 565 ntAPPRIS P1 TSL 3 BASIC20.66■□□□□ 0.9
USP47Q96K76 AC027237.1-201ENST00000560942 655 ntBASIC20.66■□□□□ 0.9
USP47Q96K76 GFER-204ENST00000567719 483 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
USP47Q96K76 AL445483.1-201ENST00000568695 736 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
USP47Q96K76 TSR1-204ENST00000576112 1290 ntTSL 5 BASIC20.66■□□□□ 0.9
USP47Q96K76 KC6-205ENST00000599934 556 ntTSL 4 BASIC20.66■□□□□ 0.9
USP47Q96K76 AC106017.2-201ENST00000631194 1173 ntTSL 2 BASIC20.66■□□□□ 0.9
USP47Q96K76 CAPN2-201ENST00000295006 3573 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
USP47Q96K76 AC215219.1-201ENST00000400706 1817 ntBASIC20.66■□□□□ 0.9
USP47Q96K76 ZNF334-202ENST00000457685 3487 ntTSL 2 BASIC20.66■□□□□ 0.9
USP47Q96K76 NFATC4-210ENST00000554050 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
USP47Q96K76 TRPV4-201ENST00000261740 3233 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
USP47Q96K76 HTR3A-205ENST00000504030 2432 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
USP47Q96K76 AC005912.2-201ENST00000619492 2400 ntBASIC20.66■□□□□ 0.9
USP47Q96K76 PPP1R3G-201ENST00000405617 4907 ntAPPRIS P1 BASIC20.66■□□□□ 0.9
USP47Q96K76 CD68-201ENST00000250092 1878 ntAPPRIS P3 TSL 1 (best) BASIC20.66■□□□□ 0.9
USP47Q96K76 NEURL1B-201ENST00000369800 6424 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
USP47Q96K76 SERPING1-204ENST00000378324 1751 ntAPPRIS ALT2 TSL 2 BASIC20.65■□□□□ 0.9
USP47Q96K76 AC007603.1-201ENST00000563124 2085 ntTSL 2 BASIC20.65■□□□□ 0.9
USP47Q96K76 TBC1D9B-201ENST00000355235 5119 ntAPPRIS P3 TSL 5 BASIC20.65■□□□□ 0.9
USP47Q96K76 HNRNPUL1-201ENST00000263367 2952 ntTSL 2 BASIC20.65■□□□□ 0.9
USP47Q96K76 KCNMA1-219ENST00000480683 2963 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
USP47Q96K76 TUBA3D-201ENST00000321253 1546 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
USP47Q96K76 RGS6-218ENST00000556437 1689 ntAPPRIS ALT1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 31.9 ms