Protein–RNA interactions for Protein: Q8TAU0

NKX2-3, Homeobox protein Nkx-2.3, humanhuman

Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-3Q8TAU0 TALDO1-203ENST00000528097 1231 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
NKX2-3Q8TAU0 AC125603.3-201ENST00000550742 486 ntTSL 3 BASIC17.54■□□□□ 0.4
NKX2-3Q8TAU0 PRKXP1-201ENST00000561423 1122 ntBASIC17.54■□□□□ 0.4
NKX2-3Q8TAU0 AP003419.4-201ENST00000616071 517 ntBASIC17.54■□□□□ 0.4
NKX2-3Q8TAU0 AP001002.2-201ENST00000625137 386 ntBASIC17.54■□□□□ 0.4
NKX2-3Q8TAU0 LINC01672-205ENST00000635092 633 ntTSL 5 BASIC17.54■□□□□ 0.4
NKX2-3Q8TAU0 AC002472.3-201ENST00000640124 621 ntBASIC17.54■□□□□ 0.4
NKX2-3Q8TAU0 PPP3CB-201ENST00000342558 2418 ntTSL 5 BASIC17.54■□□□□ 0.4
NKX2-3Q8TAU0 CDH24-202ENST00000397359 3552 ntTSL 5 BASIC17.54■□□□□ 0.4
NKX2-3Q8TAU0 TBRG4-215ENST00000494076 2190 ntAPPRIS P1 TSL 2 BASIC17.54■□□□□ 0.4
NKX2-3Q8TAU0 SMARCA4-201ENST00000344626 5392 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
NKX2-3Q8TAU0 B4GALT3-201ENST00000319769 1911 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
NKX2-3Q8TAU0 ZBED1-201ENST00000381218 2832 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
NKX2-3Q8TAU0 YTHDC1-202ENST00000355665 3244 ntAPPRIS P3 TSL 1 (best) BASIC17.54■□□□□ 0.4
NKX2-3Q8TAU0 SLC41A3-204ENST00000383598 2330 ntAPPRIS P3 TSL 2 BASIC17.54■□□□□ 0.4
NKX2-3Q8TAU0 CYP4F3-203ENST00000586182 2338 ntAPPRIS ALT1 TSL 2 BASIC17.54■□□□□ 0.4
NKX2-3Q8TAU0 POMK-201ENST00000331373 1865 ntAPPRIS P1 TSL 2 BASIC17.54■□□□□ 0.4
NKX2-3Q8TAU0 HNRNPUL1-201ENST00000263367 2952 ntTSL 2 BASIC17.54■□□□□ 0.4
NKX2-3Q8TAU0 CGGBP1-201ENST00000309534 4495 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
NKX2-3Q8TAU0 ZNF557-201ENST00000252840 2268 ntAPPRIS P3 TSL 1 (best) BASIC17.54■□□□□ 0.4
NKX2-3Q8TAU0 PCDHA13-202ENST00000409494 4884 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
NKX2-3Q8TAU0 USP43-202ENST00000570475 3500 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
NKX2-3Q8TAU0 ELL2-201ENST00000237853 6046 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
NKX2-3Q8TAU0 GPR161-202ENST00000367835 2400 ntAPPRIS P1 TSL 2 BASIC17.53■□□□□ 0.4
NKX2-3Q8TAU0 FAM135A-209ENST00000505769 4806 ntTSL 5 BASIC17.53■□□□□ 0.4
NKX2-3Q8TAU0 AC006480.2-201ENST00000609770 1337 ntBASIC17.53■□□□□ 0.4
NKX2-3Q8TAU0 AL359915.2-205ENST00000418015 1529 ntTSL 2 BASIC17.53■□□□□ 0.4
NKX2-3Q8TAU0 PDHB-206ENST00000474765 1503 ntTSL 5 BASIC17.53■□□□□ 0.4
NKX2-3Q8TAU0 AMPD2-218ENST00000528454 2728 ntTSL 2 BASIC17.53■□□□□ 0.4
NKX2-3Q8TAU0 E2F6-201ENST00000307236 3317 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
NKX2-3Q8TAU0 MLF1-217ENST00000619577 2290 ntTSL 5 BASIC17.53■□□□□ 0.4
NKX2-3Q8TAU0 TOMM34-201ENST00000372813 2062 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
NKX2-3Q8TAU0 C4B-AS1-205ENST00000415626 2095 ntTSL 2 BASIC17.53■□□□□ 0.4
NKX2-3Q8TAU0 C4A-AS1-204ENST00000458633 2095 ntTSL 2 BASIC17.53■□□□□ 0.4
NKX2-3Q8TAU0 EGOT-201ENST00000414938 1464 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
NKX2-3Q8TAU0 MYL12B-201ENST00000237500 1210 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
NKX2-3Q8TAU0 TCL1B-201ENST00000340722 1166 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
NKX2-3Q8TAU0 AC011450.1-202ENST00000358234 573 ntTSL 4 BASIC17.53■□□□□ 0.4
NKX2-3Q8TAU0 CELA2B-201ENST00000375910 923 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
NKX2-3Q8TAU0 SMIM29-202ENST00000394990 792 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
NKX2-3Q8TAU0 AL645608.5-201ENST00000398216 443 ntTSL 3 BASIC17.53■□□□□ 0.4
NKX2-3Q8TAU0 AC131097.2-203ENST00000401641 507 ntAPPRIS ALT2 TSL 2 BASIC17.53■□□□□ 0.4
NKX2-3Q8TAU0 LINC01118-202ENST00000409912 1023 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
NKX2-3Q8TAU0 AL121901.1-201ENST00000419613 366 ntTSL 3 BASIC17.53■□□□□ 0.4
NKX2-3Q8TAU0 AC099552.1-201ENST00000431083 744 ntTSL 5 BASIC17.53■□□□□ 0.4
NKX2-3Q8TAU0 RN7SL11P-201ENST00000471305 293 ntBASIC17.53■□□□□ 0.4
NKX2-3Q8TAU0 SERPINA13P-202ENST00000478994 924 ntBASIC17.53■□□□□ 0.4
NKX2-3Q8TAU0 RAMP3-202ENST00000481345 559 ntAPPRIS P2 TSL 4 BASIC17.53■□□□□ 0.4
NKX2-3Q8TAU0 AL136309.4-201ENST00000527831 640 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
NKX2-3Q8TAU0 ZNF720-210ENST00000534369 791 ntTSL 3 BASIC17.53■□□□□ 0.4
NKX2-3Q8TAU0 RPL28-208ENST00000559463 852 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
NKX2-3Q8TAU0 AP007216.2-201ENST00000562094 299 ntTSL 3 BASIC17.53■□□□□ 0.4
NKX2-3Q8TAU0 AC092634.5-202ENST00000587736 928 ntTSL 2 BASIC17.53■□□□□ 0.4
NKX2-3Q8TAU0 AC244157.2-201ENST00000616239 1006 ntBASIC17.53■□□□□ 0.4
NKX2-3Q8TAU0 CCDC197-205ENST00000636493 1279 ntAPPRIS P5 TSL 5 BASIC17.53■□□□□ 0.4
NKX2-3Q8TAU0 HLA-C-210ENST00000640219 976 ntBASIC17.53■□□□□ 0.4
NKX2-3Q8TAU0 USP10-201ENST00000219473 3009 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
NKX2-3Q8TAU0 KLF3-201ENST00000261438 5122 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
NKX2-3Q8TAU0 ZNF563-201ENST00000293725 2754 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
NKX2-3Q8TAU0 ZNF497-201ENST00000311044 3468 ntAPPRIS P1 TSL 2 BASIC17.53■□□□□ 0.4
NKX2-3Q8TAU0 CALCR-203ENST00000394441 1774 ntAPPRIS P3 TSL 1 (best) BASIC17.53■□□□□ 0.4
NKX2-3Q8TAU0 RNF135-202ENST00000328381 2892 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
NKX2-3Q8TAU0 YY1-201ENST00000262238 6697 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
NKX2-3Q8TAU0 CDC42EP4-202ENST00000439510 2879 ntTSL 2 BASIC17.52■□□□□ 0.4
NKX2-3Q8TAU0 ASB10-201ENST00000275838 1820 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
NKX2-3Q8TAU0 RNF157-AS1-204ENST00000590137 1812 ntTSL 2 BASIC17.52■□□□□ 0.4
NKX2-3Q8TAU0 TRIM33-201ENST00000358465 8339 ntAPPRIS P4 TSL 1 (best) BASIC17.52■□□□□ 0.4
NKX2-3Q8TAU0 CYB561-203ENST00000392976 3151 ntAPPRIS P1 TSL 3 BASIC17.52■□□□□ 0.4
NKX2-3Q8TAU0 PDZK1IP1-201ENST00000294338 846 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
NKX2-3Q8TAU0 PAX4-201ENST00000338516 1085 ntAPPRIS ALT2 TSL 5 BASIC17.52■□□□□ 0.4
NKX2-3Q8TAU0 NCR3-201ENST00000340027 1042 ntAPPRIS P3 TSL 1 (best) BASIC17.52■□□□□ 0.4
NKX2-3Q8TAU0 NUDT1-203ENST00000356714 662 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
NKX2-3Q8TAU0 SF3B5-201ENST00000367569 693 ntAPPRIS P1 BASIC17.52■□□□□ 0.4
NKX2-3Q8TAU0 NUDT1-204ENST00000397046 712 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
NKX2-3Q8TAU0 NIF3L1-205ENST00000409588 1269 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
NKX2-3Q8TAU0 ALG1L2-201ENST00000425059 969 ntAPPRIS P1 TSL 5 BASIC17.52■□□□□ 0.4
NKX2-3Q8TAU0 MAATS1-203ENST00000463700 939 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
NKX2-3Q8TAU0 AC104784.1-201ENST00000473096 294 ntBASIC17.52■□□□□ 0.4
NKX2-3Q8TAU0 RPL23A-206ENST00000496182 636 ntTSL 3 BASIC17.52■□□□□ 0.4
NKX2-3Q8TAU0 AC008443.1-201ENST00000511331 1000 ntTSL 3 BASIC17.52■□□□□ 0.4
NKX2-3Q8TAU0 FAM153B-214ENST00000512862 1071 ntAPPRIS ALT2 TSL 2 BASIC17.52■□□□□ 0.4
NKX2-3Q8TAU0 AC097103.2-206ENST00000514729 588 ntTSL 4 BASIC17.52■□□□□ 0.4
NKX2-3Q8TAU0 PSORS1C1-206ENST00000547221 655 ntAPPRIS ALT2 TSL 3 BASIC17.52■□□□□ 0.4
NKX2-3Q8TAU0 AL163636.1-201ENST00000554286 915 ntTSL 5 BASIC17.52■□□□□ 0.4
NKX2-3Q8TAU0 AC025048.1-201ENST00000592317 542 ntTSL 4 BASIC17.52■□□□□ 0.4
NKX2-3Q8TAU0 STPG3-204ENST00000611378 1015 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
NKX2-3Q8TAU0 AC091544.8-201ENST00000619490 361 ntBASIC17.52■□□□□ 0.4
NKX2-3Q8TAU0 MEF2C-227ENST00000626391 1182 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
NKX2-3Q8TAU0 MEF2C-231ENST00000628656 1254 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
NKX2-3Q8TAU0 ADAM15-201ENST00000271836 2799 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.4
NKX2-3Q8TAU0 MRPS7-201ENST00000245539 1406 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
NKX2-3Q8TAU0 LINC01168-201ENST00000461291 5254 ntTSL 2 BASIC17.52■□□□□ 0.4
NKX2-3Q8TAU0 OPN4-202ENST00000372071 2401 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
NKX2-3Q8TAU0 PCDHA7-202ENST00000525929 5221 ntAPPRIS P2 TSL 1 (best) BASIC17.52■□□□□ 0.39
NKX2-3Q8TAU0 FAM103A1-201ENST00000304191 1568 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
NKX2-3Q8TAU0 TRMT11-201ENST00000334379 1565 ntAPPRIS P2 TSL 1 (best) BASIC17.52■□□□□ 0.39
NKX2-3Q8TAU0 HCG27-201ENST00000383331 1720 ntTSL 1 (best) BASIC17.52■□□□□ 0.39
NKX2-3Q8TAU0 DDX50-206ENST00000610822 2510 ntTSL 5 BASIC17.52■□□□□ 0.39
NKX2-3Q8TAU0 ZNF746-201ENST00000340622 3806 ntAPPRIS P3 TSL 1 (best) BASIC17.52■□□□□ 0.39
NKX2-3Q8TAU0 BCAS4-201ENST00000358791 1378 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 36.6 ms