Protein–RNA interactions for Protein: Q8N205

SYNE4, Nesprin-4, humanhuman

Predictions only

Length 404 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE4Q8N205 UNC119B-201ENST00000344651 4404 ntAPPRIS P1 TSL 2 BASIC18.36■□□□□ 0.53
SYNE4Q8N205 TDRP-205ENST00000613071 3421 ntAPPRIS P1 TSL 3 BASIC18.36■□□□□ 0.53
SYNE4Q8N205 SUPT20H-212ENST00000475892 2836 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
SYNE4Q8N205 EGLN3-201ENST00000250457 2709 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
SYNE4Q8N205 NUTM2F-201ENST00000253262 2561 ntAPPRIS P2 TSL 1 (best) BASIC18.36■□□□□ 0.53
SYNE4Q8N205 SIDT1-202ENST00000393830 2572 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
SYNE4Q8N205 KIF18B-203ENST00000590129 2569 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
SYNE4Q8N205 CENPT-202ENST00000440851 2200 ntAPPRIS P2 TSL 5 BASIC18.35■□□□□ 0.53
SYNE4Q8N205 AGAP7P-201ENST00000582299 2062 ntBASIC18.35■□□□□ 0.53
SYNE4Q8N205 AGAP14-201ENST00000624701 2060 ntBASIC18.35■□□□□ 0.53
SYNE4Q8N205 STRA6-205ENST00000432245 1889 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
SYNE4Q8N205 STK26-204ENST00000481105 1835 ntTSL 2 BASIC18.35■□□□□ 0.53
SYNE4Q8N205 ITGA8-201ENST00000378076 6755 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
SYNE4Q8N205 TMEM57-202ENST00000399766 3294 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
SYNE4Q8N205 AL590440.2-201ENST00000641973 1595 ntBASIC18.35■□□□□ 0.53
SYNE4Q8N205 EHF-210ENST00000531794 1481 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
SYNE4Q8N205 ENAH-203ENST00000366843 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
SYNE4Q8N205 UPK3BL1-201ENST00000340457 1342 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
SYNE4Q8N205 IL9-201ENST00000274520 591 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
SYNE4Q8N205 CRB3-201ENST00000308243 631 ntAPPRIS ALT2 TSL 2 BASIC18.35■□□□□ 0.53
SYNE4Q8N205 RPP25L-202ENST00000378959 888 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
SYNE4Q8N205 LINC00313-205ENST00000427188 967 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
SYNE4Q8N205 SHANK2-210ENST00000449116 939 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
SYNE4Q8N205 OSMR-AS1-202ENST00000512519 837 ntTSL 2 BASIC18.35■□□□□ 0.53
SYNE4Q8N205 AL356756.1-201ENST00000550941 551 ntTSL 3 BASIC18.35■□□□□ 0.53
SYNE4Q8N205 FKBP11-212ENST00000552878 1052 ntAPPRIS ALT2 TSL 2 BASIC18.35■□□□□ 0.53
SYNE4Q8N205 HPN-206ENST00000597419 1212 ntTSL 5 BASIC18.35■□□□□ 0.53
SYNE4Q8N205 TTC28-AS1_3.1-201ENST00000615579 181 ntBASIC18.35■□□□□ 0.53
SYNE4Q8N205 AP001065.2-201ENST00000617205 644 ntBASIC18.35■□□□□ 0.53
SYNE4Q8N205 YRDCP1-201ENST00000621419 643 ntBASIC18.35■□□□□ 0.53
SYNE4Q8N205 FUCA2-201ENST00000002165 2356 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
SYNE4Q8N205 ASAH1-210ENST00000520781 2245 ntTSL 2 BASIC18.35■□□□□ 0.53
SYNE4Q8N205 GDF7-201ENST00000272224 9749 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
SYNE4Q8N205 MEOX1-202ENST00000329168 2129 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
SYNE4Q8N205 TLE3-215ENST00000559048 2918 ntTSL 2 BASIC18.35■□□□□ 0.53
SYNE4Q8N205 CYP11A1-201ENST00000268053 1934 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
SYNE4Q8N205 KIAA0513-207ENST00000567328 1873 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
SYNE4Q8N205 RNF157-AS1-204ENST00000590137 1812 ntTSL 2 BASIC18.35■□□□□ 0.53
SYNE4Q8N205 KCTD1-203ENST00000417602 1705 ntAPPRIS P1 TSL 5 BASIC18.35■□□□□ 0.53
SYNE4Q8N205 ADGRB2-206ENST00000398556 4879 ntAPPRIS ALT2 TSL 5 BASIC18.34■□□□□ 0.53
SYNE4Q8N205 BICDL1-201ENST00000397558 3055 ntAPPRIS P1 TSL 5 BASIC18.34■□□□□ 0.53
SYNE4Q8N205 TBXAS1-201ENST00000336425 2185 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
SYNE4Q8N205 RNF31-201ENST00000324103 3627 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
SYNE4Q8N205 MCFD2-201ENST00000319466 4182 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
SYNE4Q8N205 CRAT-201ENST00000318080 2763 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
SYNE4Q8N205 MRPL19-201ENST00000358788 693 ntTSL 5 BASIC18.34■□□□□ 0.53
SYNE4Q8N205 PRTFDC1-202ENST00000376376 741 ntTSL 2 BASIC18.34■□□□□ 0.53
SYNE4Q8N205 UBE4B-203ENST00000377153 1273 ntTSL 3 BASIC18.34■□□□□ 0.53
SYNE4Q8N205 ESD-202ENST00000378720 1192 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
SYNE4Q8N205 RPL3-202ENST00000401609 1289 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
SYNE4Q8N205 PFN2-202ENST00000423691 911 ntTSL 2 BASIC18.34■□□□□ 0.53
SYNE4Q8N205 AC133961.1-201ENST00000503085 762 ntTSL 3 BASIC18.34■□□□□ 0.53
SYNE4Q8N205 LTBR-209ENST00000541102 1084 ntTSL 5 BASIC18.34■□□□□ 0.53
SYNE4Q8N205 LGALS3-204ENST00000554715 916 ntTSL 3 BASIC18.34■□□□□ 0.53
SYNE4Q8N205 STUB1-204ENST00000564370 875 ntTSL 2 BASIC18.34■□□□□ 0.53
SYNE4Q8N205 MIR3677-201ENST00000578964 60 ntBASIC18.34■□□□□ 0.53
SYNE4Q8N205 ZNF350-AS1-202ENST00000600253 577 ntTSL 4 BASIC18.34■□□□□ 0.53
SYNE4Q8N205 ZNF772-207ENST00000601768 482 ntTSL 3 BASIC18.34■□□□□ 0.53
SYNE4Q8N205 AC138894.2-201ENST00000602838 371 ntBASIC18.34■□□□□ 0.53
SYNE4Q8N205 C14orf79-205ENST00000549240 2503 ntAPPRIS ALT2 TSL 2 BASIC18.34■□□□□ 0.53
SYNE4Q8N205 PDZD4-202ENST00000393758 3763 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
SYNE4Q8N205 AL391244.1-206ENST00000447725 1843 ntTSL 5 BASIC18.34■□□□□ 0.53
SYNE4Q8N205 PARN-202ENST00000420015 2360 ntTSL 2 BASIC18.34■□□□□ 0.53
SYNE4Q8N205 NAXD-202ENST00000424185 2311 ntTSL 2 BASIC18.34■□□□□ 0.53
SYNE4Q8N205 BBS5-201ENST00000295240 3475 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
SYNE4Q8N205 SPATS2L-218ENST00000451764 2250 ntAPPRIS P1 TSL 5 BASIC18.34■□□□□ 0.53
SYNE4Q8N205 ABR-203ENST00000536794 2213 ntTSL 2 BASIC18.34■□□□□ 0.53
SYNE4Q8N205 CRK-201ENST00000300574 3880 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
SYNE4Q8N205 AC006486.2-201ENST00000624246 2199 ntBASIC18.34■□□□□ 0.53
SYNE4Q8N205 AC092384.2-204ENST00000565053 2566 ntTSL 2 BASIC18.34■□□□□ 0.53
SYNE4Q8N205 JAKMIP1-204ENST00000409831 2371 ntAPPRIS P1 TSL 2 BASIC18.33■□□□□ 0.53
SYNE4Q8N205 SLC35A3-221ENST00000640600 3341 ntTSL 5 BASIC18.33■□□□□ 0.53
SYNE4Q8N205 GOLGA8R-201ENST00000327271 1896 ntAPPRIS P1 TSL 5 BASIC18.33■□□□□ 0.53
SYNE4Q8N205 KLF3-201ENST00000261438 5122 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
SYNE4Q8N205 TRPC4AP-201ENST00000252015 3226 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
SYNE4Q8N205 P2RX3-201ENST00000263314 1831 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
SYNE4Q8N205 C3orf67-201ENST00000295966 2650 ntTSL 2 BASIC18.33■□□□□ 0.53
SYNE4Q8N205 MLF1-201ENST00000355893 2203 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
SYNE4Q8N205 TRIP10-210ENST00000600428 2249 ntTSL 5 BASIC18.33■□□□□ 0.53
SYNE4Q8N205 RGS6-217ENST00000555571 1764 ntAPPRIS P3 TSL 1 (best) BASIC18.33■□□□□ 0.53
SYNE4Q8N205 KLK3-216ENST00000617027 1341 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
SYNE4Q8N205 KCNC2-207ENST00000548513 3026 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.52
SYNE4Q8N205 SLC32A1-201ENST00000217420 2574 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
SYNE4Q8N205 SLC17A9-201ENST00000370349 2594 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.52
SYNE4Q8N205 IER3-201ENST00000259874 1244 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
SYNE4Q8N205 ARHGEF1-204ENST00000378152 2986 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
SYNE4Q8N205 AL627389.1-201ENST00000413508 1182 ntBASIC18.33■□□□□ 0.52
SYNE4Q8N205 AC026320.2-201ENST00000434379 478 ntBASIC18.33■□□□□ 0.52
SYNE4Q8N205 AC003686.1-201ENST00000550956 1034 ntBASIC18.33■□□□□ 0.52
SYNE4Q8N205 AL132709.1-203ENST00000555103 569 ntTSL 4 BASIC18.33■□□□□ 0.52
SYNE4Q8N205 AQP8-202ENST00000566125 1276 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
SYNE4Q8N205 AC061992.1-201ENST00000592569 777 ntTSL 3 BASIC18.33■□□□□ 0.52
SYNE4Q8N205 MIR6769A-201ENST00000617340 73 ntBASIC18.33■□□□□ 0.52
SYNE4Q8N205 ARL16-215ENST00000622299 1053 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
SYNE4Q8N205 AC009084.3-201ENST00000623356 437 ntBASIC18.33■□□□□ 0.52
SYNE4Q8N205 AC004706.3-207ENST00000634823 977 ntTSL 5 BASIC18.33■□□□□ 0.52
SYNE4Q8N205 COPS7B-206ENST00000410017 2051 ntTSL 3 BASIC18.33■□□□□ 0.52
SYNE4Q8N205 EXOG-201ENST00000287675 2792 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
SYNE4Q8N205 FES-204ENST00000414248 2327 ntTSL 2 BASIC18.33■□□□□ 0.52
SYNE4Q8N205 RUFY2-204ENST00000399200 2685 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 45.4 ms