Protein–RNA interactions for Protein: Q07699

SCN1B, Sodium channel subunit beta-1, humanhuman

Predictions only

Length 218 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1BQ07699 PPIP5K1-209ENST00000420765 5718 ntAPPRIS ALT2 TSL 5 BASIC13.39□□□□□ -0.27
SCN1BQ07699 PRRT2-201ENST00000300797 3002 ntTSL 2 BASIC13.39□□□□□ -0.27
SCN1BQ07699 TRAPPC1-201ENST00000303731 811 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
SCN1BQ07699 FIGLA-201ENST00000332372 722 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
SCN1BQ07699 AC093423.3-201ENST00000370453 654 ntAPPRIS P1 TSL 5 BASIC13.39□□□□□ -0.27
SCN1BQ07699 MRPS18A-202ENST00000372133 1062 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
SCN1BQ07699 LINC01121-201ENST00000378479 1095 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
SCN1BQ07699 AL137003.1-201ENST00000423260 491 ntTSL 5 BASIC13.39□□□□□ -0.27
SCN1BQ07699 RBPMS2P1-201ENST00000437762 623 ntBASIC13.39□□□□□ -0.27
SCN1BQ07699 AKIRIN1-203ENST00000446189 1243 ntTSL 2 BASIC13.39□□□□□ -0.27
SCN1BQ07699 TWIST2-201ENST00000448943 1176 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
SCN1BQ07699 TMEM44-AS1-203ENST00000453671 1119 ntTSL 2 BASIC13.39□□□□□ -0.27
SCN1BQ07699 AC122138.1-201ENST00000508799 646 ntTSL 2 BASIC13.39□□□□□ -0.27
SCN1BQ07699 VASH2-211ENST00000517399 1068 ntAPPRIS ALT1 TSL 1 (best) BASIC13.39□□□□□ -0.27
SCN1BQ07699 AC100810.1-201ENST00000518822 978 ntTSL 2 BASIC13.39□□□□□ -0.27
SCN1BQ07699 AC007406.4-201ENST00000539568 765 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
SCN1BQ07699 AC103808.2-201ENST00000582755 594 ntTSL 4 BASIC13.39□□□□□ -0.27
SCN1BQ07699 AC108010.1-201ENST00000605862 1107 ntTSL 5 BASIC13.39□□□□□ -0.27
SCN1BQ07699 LAMTOR5-208ENST00000614544 846 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
SCN1BQ07699 CD1E-212ENST00000368167 1458 ntAPPRIS P4 TSL 1 (best) BASIC13.39□□□□□ -0.27
SCN1BQ07699 PFDN4-201ENST00000371419 1462 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
SCN1BQ07699 DGCR8-201ENST00000351989 4514 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
SCN1BQ07699 TNS2-203ENST00000379902 4737 ntAPPRIS ALT2 TSL 1 (best) BASIC13.39□□□□□ -0.27
SCN1BQ07699 SLC22A16-202ENST00000368919 1987 ntAPPRIS P2 TSL 1 (best) BASIC13.39□□□□□ -0.27
SCN1BQ07699 NTRK3-AS1-201ENST00000569588 2663 ntTSL 2 BASIC13.39□□□□□ -0.27
SCN1BQ07699 KDM5C-208ENST00000452825 6096 ntAPPRIS ALT2 TSL 5 BASIC13.39□□□□□ -0.27
SCN1BQ07699 NAA15-201ENST00000296543 6222 ntAPPRIS P2 TSL 1 (best) BASIC13.39□□□□□ -0.27
SCN1BQ07699 LDLRAD2-201ENST00000344642 4012 ntAPPRIS P1 TSL 2 BASIC13.39□□□□□ -0.27
SCN1BQ07699 ATRIP-204ENST00000412052 2721 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
SCN1BQ07699 TOX2-202ENST00000358131 2605 ntTSL 2 BASIC13.39□□□□□ -0.27
SCN1BQ07699 KRT36-202ENST00000393986 1707 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
SCN1BQ07699 STMN1-203ENST00000399728 1712 ntAPPRIS P1 TSL 2 BASIC13.39□□□□□ -0.27
SCN1BQ07699 AL023775.1-201ENST00000454907 1746 ntBASIC13.39□□□□□ -0.27
SCN1BQ07699 SPIN3-207ENST00000638386 4461 ntAPPRIS P1 TSL 2 BASIC13.39□□□□□ -0.27
SCN1BQ07699 OSBPL5-201ENST00000263650 3889 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
SCN1BQ07699 OTP-201ENST00000306422 3669 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
SCN1BQ07699 PSIP1-203ENST00000380733 3391 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
SCN1BQ07699 FRZB-201ENST00000295113 3162 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
SCN1BQ07699 FAAP100-202ENST00000425898 2996 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
SCN1BQ07699 CES1-203ENST00000422046 2178 ntAPPRIS ALT1 TSL 1 (best) BASIC13.38□□□□□ -0.27
SCN1BQ07699 SLC4A5-201ENST00000346834 6233 ntAPPRIS P4 TSL 5 BASIC13.38□□□□□ -0.27
SCN1BQ07699 TM9SF1-202ENST00000396854 2055 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
SCN1BQ07699 NLRP13-201ENST00000342929 3132 ntAPPRIS P3 TSL 1 (best) BASIC13.38□□□□□ -0.27
SCN1BQ07699 GPR4-201ENST00000323040 3048 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
SCN1BQ07699 IDH3G-203ENST00000370093 1662 ntTSL 2 BASIC13.38□□□□□ -0.27
SCN1BQ07699 MTX3-201ENST00000509852 1655 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
SCN1BQ07699 NT5C3A-213ENST00000610140 1670 ntAPPRIS ALT1 TSL 1 (best) BASIC13.38□□□□□ -0.27
SCN1BQ07699 RASSF3-204ENST00000542104 3492 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
SCN1BQ07699 PPFIA4-203ENST00000367240 6434 ntAPPRIS P5 TSL 5 BASIC13.38□□□□□ -0.27
SCN1BQ07699 DKKL1-201ENST00000221498 1222 ntAPPRIS P2 TSL 1 (best) BASIC13.38□□□□□ -0.27
SCN1BQ07699 ARMC12-201ENST00000288065 1169 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
SCN1BQ07699 C19orf70-201ENST00000309324 896 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
SCN1BQ07699 CACNB2-206ENST00000377328 1233 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
SCN1BQ07699 TKFC-201ENST00000394900 4696 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
SCN1BQ07699 AC004461.1-201ENST00000412461 403 ntBASIC13.38□□□□□ -0.27
SCN1BQ07699 GHSR-202ENST00000427970 912 ntBASIC13.38□□□□□ -0.27
SCN1BQ07699 FAM58DP-201ENST00000428076 619 ntBASIC13.38□□□□□ -0.27
SCN1BQ07699 AFG3L1P-209ENST00000429663 458 ntTSL 3 BASIC13.38□□□□□ -0.27
SCN1BQ07699 AC099552.3-201ENST00000454149 367 ntTSL 3 BASIC13.38□□□□□ -0.27
SCN1BQ07699 AC092691.1-201ENST00000484092 554 ntTSL 4 BASIC13.38□□□□□ -0.27
SCN1BQ07699 AC112482.1-201ENST00000492080 688 ntBASIC13.38□□□□□ -0.27
SCN1BQ07699 SEC24B-AS1-203ENST00000505895 800 ntTSL 4 BASIC13.38□□□□□ -0.27
SCN1BQ07699 SMIM15-AS1-201ENST00000506902 796 ntTSL 3 BASIC13.38□□□□□ -0.27
SCN1BQ07699 ATP6V0A2-207ENST00000544833 1013 ntTSL 2 BASIC13.38□□□□□ -0.27
SCN1BQ07699 ZNF843-202ENST00000564218 3816 ntAPPRIS ALT2 TSL 5 BASIC13.38□□□□□ -0.27
SCN1BQ07699 RPL13-214ENST00000567815 712 ntAPPRIS P1 TSL 3 BASIC13.38□□□□□ -0.27
SCN1BQ07699 DCTPP1-203ENST00000567983 801 ntTSL 5 BASIC13.38□□□□□ -0.27
SCN1BQ07699 IL11-202ENST00000585513 1201 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
SCN1BQ07699 TNNT1-211ENST00000588426 683 ntTSL 5 BASIC13.38□□□□□ -0.27
SCN1BQ07699 RAMP2-205ENST00000589683 858 ntTSL 3 BASIC13.38□□□□□ -0.27
SCN1BQ07699 AC007192.2-201ENST00000600364 463 ntTSL 5 BASIC13.38□□□□□ -0.27
SCN1BQ07699 FSTL3-207ENST00000605925 748 ntTSL 4 BASIC13.38□□□□□ -0.27
SCN1BQ07699 MCCC2-209ENST00000629193 1128 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
SCN1BQ07699 NDNF-201ENST00000379692 2885 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
SCN1BQ07699 MX1-202ENST00000398598 2850 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
SCN1BQ07699 POU2F2-202ENST00000389341 6901 ntAPPRIS P3 TSL 1 (best) BASIC13.38□□□□□ -0.27
SCN1BQ07699 F2-201ENST00000311907 2023 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
SCN1BQ07699 ARMCX2-201ENST00000328766 2762 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
SCN1BQ07699 SIRPA-202ENST00000358771 3996 ntAPPRIS P3 TSL 1 (best) BASIC13.38□□□□□ -0.27
SCN1BQ07699 SLC35G1-201ENST00000371408 3490 ntAPPRIS P3 TSL 2 BASIC13.38□□□□□ -0.27
SCN1BQ07699 GNAI2-201ENST00000266027 2169 ntTSL 2 BASIC13.38□□□□□ -0.27
SCN1BQ07699 AC025594.2-201ENST00000609480 3902 ntAPPRIS P1 TSL 3 BASIC13.38□□□□□ -0.27
SCN1BQ07699 OCRL-201ENST00000357121 5138 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
SCN1BQ07699 SEPT11-206ENST00000505788 2079 ntAPPRIS ALT1 TSL 5 BASIC13.38□□□□□ -0.27
SCN1BQ07699 MAP7-201ENST00000354570 4152 ntAPPRIS P3 TSL 1 (best) BASIC13.38□□□□□ -0.27
SCN1BQ07699 AC020658.7-201ENST00000624274 2442 ntBASIC13.38□□□□□ -0.27
SCN1BQ07699 P2RX5-207ENST00000551178 1863 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
SCN1BQ07699 SF3A1-201ENST00000215793 5143 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
SCN1BQ07699 KDM8-212ENST00000568965 1655 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
SCN1BQ07699 C19orf66-202ENST00000397881 2140 ntAPPRIS ALT2 TSL 2 BASIC13.37□□□□□ -0.27
SCN1BQ07699 CACNA2D4-220ENST00000585732 2566 ntTSL 5 BASIC13.37□□□□□ -0.27
SCN1BQ07699 GNAS-213ENST00000371099 3709 ntTSL 5 BASIC13.37□□□□□ -0.27
SCN1BQ07699 AC114271.1-201ENST00000612689 2813 ntBASIC13.37□□□□□ -0.27
SCN1BQ07699 DISC1-221ENST00000620189 6689 ntAPPRIS ALT2 TSL 5 BASIC13.37□□□□□ -0.27
SCN1BQ07699 HFE-202ENST00000317896 1922 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
SCN1BQ07699 ABCC5-203ENST00000382494 1923 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
SCN1BQ07699 STRCP1-201ENST00000509801 5328 ntBASIC13.37□□□□□ -0.27
SCN1BQ07699 ACTL7A-201ENST00000333999 1494 ntAPPRIS P1 BASIC13.37□□□□□ -0.27
SCN1BQ07699 FAM131A-203ENST00000383847 1483 ntAPPRIS P1 TSL 2 BASIC13.37□□□□□ -0.27
SCN1BQ07699 BCS1L-212ENST00000439945 1483 ntAPPRIS P1 TSL 5 BASIC13.37□□□□□ -0.27
Retrieved 100 of 98,524 protein–RNA pairs in 54.9 ms