Protein–RNA interactions for Protein: P55854

SUMO3, Small ubiquitin-related modifier 3, humanhuman

Predicted RBP Predictions only

Length 103 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SUMO3P55854 MDM2-215ENST00000428863 1037 ntTSL 5 BASIC13.48□□□□□ -0.25
SUMO3P55854 AC026954.1-201ENST00000429771 1293 ntBASIC13.48□□□□□ -0.25
SUMO3P55854 PTPA-215ENST00000432124 567 ntTSL 4 BASIC13.48□□□□□ -0.25
SUMO3P55854 YBX1P6-201ENST00000442962 1002 ntBASIC13.48□□□□□ -0.25
SUMO3P55854 CHMP1AP1-201ENST00000445563 662 ntBASIC13.48□□□□□ -0.25
SUMO3P55854 AC022210.1-201ENST00000449856 793 ntBASIC13.48□□□□□ -0.25
SUMO3P55854 GLIS3-AS1-201ENST00000451340 734 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
SUMO3P55854 CIDEC-206ENST00000455015 1123 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
SUMO3P55854 RAB3A-202ENST00000464076 1253 ntTSL 2 BASIC13.48□□□□□ -0.25
SUMO3P55854 AC106786.2-201ENST00000506859 561 ntTSL 4 BASIC13.48□□□□□ -0.25
SUMO3P55854 IFITM1-204ENST00000528780 730 ntAPPRIS P1 TSL 3 BASIC13.48□□□□□ -0.25
SUMO3P55854 TPD52L1-214ENST00000534199 811 ntTSL 2 BASIC13.48□□□□□ -0.25
SUMO3P55854 AC021054.1-202ENST00000543884 599 ntTSL 3 BASIC13.48□□□□□ -0.25
SUMO3P55854 ATP6V0A2-207ENST00000544833 1013 ntTSL 2 BASIC13.48□□□□□ -0.25
SUMO3P55854 HILS1-202ENST00000545329 423 ntBASIC13.48□□□□□ -0.25
SUMO3P55854 AL110118.2-203ENST00000557574 554 ntAPPRIS P1 TSL 4 BASIC13.48□□□□□ -0.25
SUMO3P55854 AC103988.2-201ENST00000561804 725 ntBASIC13.48□□□□□ -0.25
SUMO3P55854 SLC38A7-207ENST00000564391 731 ntTSL 2 BASIC13.48□□□□□ -0.25
SUMO3P55854 DYNLRB2-205ENST00000568035 409 ntTSL 5 BASIC13.48□□□□□ -0.25
SUMO3P55854 AC145343.1-201ENST00000579629 650 ntTSL 3 BASIC13.48□□□□□ -0.25
SUMO3P55854 FBXL12-211ENST00000591009 1005 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
SUMO3P55854 YIF1B-215ENST00000592246 936 ntTSL 3 BASIC13.48□□□□□ -0.25
SUMO3P55854 UBE2E3-205ENST00000602475 602 ntTSL 3 BASIC13.48□□□□□ -0.25
SUMO3P55854 AP000229.1-202ENST00000609365 559 ntTSL 4 BASIC13.48□□□□□ -0.25
SUMO3P55854 MIR6074-201ENST00000612054 107 ntBASIC13.48□□□□□ -0.25
SUMO3P55854 AL590644.3-201ENST00000635428 1228 ntTSL 5 BASIC13.48□□□□□ -0.25
SUMO3P55854 EDDM13-208ENST00000637802 854 ntAPPRIS P1 TSL 5 BASIC13.48□□□□□ -0.25
SUMO3P55854 TNFRSF10A-201ENST00000221132 2714 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
SUMO3P55854 SORCS2-201ENST00000329016 5582 ntAPPRIS ALT2 TSL 5 BASIC13.48□□□□□ -0.25
SUMO3P55854 CYP1A1-203ENST00000395049 1594 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
SUMO3P55854 PDE8B-202ENST00000333194 2572 ntAPPRIS ALT2 TSL 1 (best) BASIC13.48□□□□□ -0.25
SUMO3P55854 ZNF750-202ENST00000572562 1513 ntTSL 2 BASIC13.48□□□□□ -0.25
SUMO3P55854 F10-203ENST00000409306 1450 ntTSL 3 BASIC13.48□□□□□ -0.25
SUMO3P55854 NLRX1-202ENST00000409109 4092 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
SUMO3P55854 MEF2C-AS1-210ENST00000514011 1754 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
SUMO3P55854 AP002414.2-201ENST00000591780 3365 ntBASIC13.48□□□□□ -0.25
SUMO3P55854 NOS1AP-201ENST00000361897 4931 ntAPPRIS P3 TSL 1 (best) BASIC13.47□□□□□ -0.25
SUMO3P55854 MRPS7-201ENST00000245539 1406 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
SUMO3P55854 CAP2-206ENST00000489374 1430 ntTSL 2 BASIC13.47□□□□□ -0.25
SUMO3P55854 ECHDC1-220ENST00000528402 1449 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
SUMO3P55854 AC015802.1-201ENST00000588104 1449 ntBASIC13.47□□□□□ -0.25
SUMO3P55854 TSPAN11-201ENST00000261177 5505 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
SUMO3P55854 SUGP2-202ENST00000337018 3640 ntAPPRIS P3 TSL 1 (best) BASIC13.47□□□□□ -0.25
SUMO3P55854 MAPKAPK3-203ENST00000446044 2988 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
SUMO3P55854 NIPAL4-201ENST00000311946 3274 ntAPPRIS P3 TSL 1 (best) BASIC13.47□□□□□ -0.25
SUMO3P55854 MAGEA2-203ENST00000611557 2024 ntAPPRIS P1 TSL 5 BASIC13.47□□□□□ -0.25
SUMO3P55854 FOXI2-201ENST00000388920 3217 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
SUMO3P55854 PCDHA9-202ENST00000532602 6293 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
SUMO3P55854 NMBR-201ENST00000258042 1354 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
SUMO3P55854 CRCP-201ENST00000338592 1393 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
SUMO3P55854 COX10-201ENST00000261643 2873 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
SUMO3P55854 ZNF334-202ENST00000457685 3487 ntTSL 2 BASIC13.47□□□□□ -0.25
SUMO3P55854 ENO2-211ENST00000541477 2549 ntAPPRIS P1 TSL 2 BASIC13.47□□□□□ -0.25
SUMO3P55854 BAIAP2-201ENST00000321280 1939 ntAPPRIS ALT2 TSL 1 (best) BASIC13.47□□□□□ -0.25
SUMO3P55854 PRKD2-201ENST00000291281 3070 ntAPPRIS P3 TSL 1 (best) BASIC13.47□□□□□ -0.25
SUMO3P55854 ADGRG2-207ENST00000379869 4768 ntAPPRIS ALT2 TSL 1 (best) BASIC13.47□□□□□ -0.25
SUMO3P55854 NEDD4L-202ENST00000356462 3335 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
SUMO3P55854 AC106881.1-201ENST00000605849 3329 ntBASIC13.47□□□□□ -0.25
SUMO3P55854 SLC35E2B-203ENST00000611123 5948 ntAPPRIS P1 TSL 2 BASIC13.47□□□□□ -0.25
SUMO3P55854 POLR1E-202ENST00000377798 1868 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
SUMO3P55854 AC139712.1-201ENST00000378256 1875 ntBASIC13.47□□□□□ -0.25
SUMO3P55854 EIF3G-201ENST00000253108 1103 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
SUMO3P55854 MRPL53-201ENST00000258105 1162 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
SUMO3P55854 OR8S1-201ENST00000310194 1080 ntBASIC13.47□□□□□ -0.25
SUMO3P55854 ANO1-201ENST00000316296 2118 ntTSL 2 BASIC13.47□□□□□ -0.25
SUMO3P55854 NOL4L-202ENST00000326071 701 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
SUMO3P55854 RBM38-204ENST00000371219 760 ntTSL 2 BASIC13.47□□□□□ -0.25
SUMO3P55854 PLAC9-201ENST00000372263 785 ntAPPRIS P2 TSL 1 (best) BASIC13.47□□□□□ -0.25
SUMO3P55854 C9orf16-201ENST00000372994 713 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
SUMO3P55854 TPO-206ENST00000382269 1155 ntTSL 5 BASIC13.47□□□□□ -0.25
SUMO3P55854 MRPL23-204ENST00000397297 613 ntTSL 2 BASIC13.47□□□□□ -0.25
SUMO3P55854 PGF-202ENST00000405431 666 ntTSL 5 BASIC13.47□□□□□ -0.25
SUMO3P55854 AC010141.1-201ENST00000411585 623 ntBASIC13.47□□□□□ -0.25
SUMO3P55854 AL157392.1-201ENST00000412388 373 ntTSL 2 BASIC13.47□□□□□ -0.25
SUMO3P55854 AC079178.1-201ENST00000420915 656 ntBASIC13.47□□□□□ -0.25
SUMO3P55854 DNAJC19-209ENST00000491873 769 ntTSL 2 BASIC13.47□□□□□ -0.25
SUMO3P55854 AC109479.1-201ENST00000519603 624 ntTSL 2 BASIC13.47□□□□□ -0.25
SUMO3P55854 IGHV3-71-201ENST00000523324 359 ntBASIC13.47□□□□□ -0.25
SUMO3P55854 NR2C2AP-207ENST00000544883 899 ntTSL 2 BASIC13.47□□□□□ -0.25
SUMO3P55854 SNX29P1-201ENST00000548357 1007 ntBASIC13.47□□□□□ -0.25
SUMO3P55854 DUX4L45-201ENST00000566406 1057 ntBASIC13.47□□□□□ -0.25
SUMO3P55854 COX11-210ENST00000639671 696 ntBASIC13.47□□□□□ -0.25
SUMO3P55854 ITSN2-203ENST00000406921 4563 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
SUMO3P55854 CEP295NL-201ENST00000322630 2090 ntTSL 2 BASIC13.47□□□□□ -0.25
SUMO3P55854 PYGM-202ENST00000377432 2611 ntTSL 2 BASIC13.47□□□□□ -0.25
SUMO3P55854 EXOC7-213ENST00000467929 2260 ntTSL 2 BASIC13.47□□□□□ -0.25
SUMO3P55854 MAPK7-203ENST00000395602 3059 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
SUMO3P55854 GPER1-201ENST00000297469 2778 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
SUMO3P55854 ELFN1-201ENST00000424383 3845 ntAPPRIS P1 TSL 5 BASIC13.47□□□□□ -0.25
SUMO3P55854 HOGA1-203ENST00000370647 1999 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
SUMO3P55854 ZNF7-202ENST00000446747 2242 ntAPPRIS ALT2 TSL 1 (best) BASIC13.47□□□□□ -0.25
SUMO3P55854 EPB41L4A-AS1-201ENST00000413221 2969 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
SUMO3P55854 SIGLEC6-202ENST00000346477 1940 ntAPPRIS ALT2 TSL 2 BASIC13.47□□□□□ -0.25
SUMO3P55854 EXOC6B-202ENST00000410104 5795 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
SUMO3P55854 GPR161-202ENST00000367835 2400 ntAPPRIS P1 TSL 2 BASIC13.47□□□□□ -0.25
SUMO3P55854 UBTF-201ENST00000302904 4997 ntAPPRIS P1 TSL 2 BASIC13.47□□□□□ -0.25
SUMO3P55854 COL9A1-204ENST00000370496 1372 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
SUMO3P55854 MAGEB2-201ENST00000378988 1610 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
SUMO3P55854 SPAG1-202ENST00000388798 3852 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
SUMO3P55854 OSBPL10-201ENST00000396556 6600 ntAPPRIS P3 TSL 1 (best) BASIC13.46□□□□□ -0.25
Retrieved 100 of 98,524 protein–RNA pairs in 50.3 ms