Protein–RNA interactions for Protein: P49711

CTCF, Transcriptional repressor CTCF, humanhuman

Predicted RBP Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTCFP49711 FDFT1-224ENST00000618539 2660 ntAPPRIS P1 TSL 5 BASIC17.17■□□□□ 0.34
CTCFP49711 CBSL-201ENST00000398168 2514 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
CTCFP49711 NFATC4-201ENST00000250373 4749 ntAPPRIS P3 TSL 1 (best) BASIC17.17■□□□□ 0.34
CTCFP49711 CCDC51-206ENST00000447018 1461 ntTSL 2 BASIC17.17■□□□□ 0.34
CTCFP49711 PNMA6E-202ENST00000633844 2596 ntTSL 3 BASIC17.17■□□□□ 0.34
CTCFP49711 EXOC7-213ENST00000467929 2260 ntTSL 2 BASIC17.17■□□□□ 0.34
CTCFP49711 PIEZO1-201ENST00000301015 8072 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
CTCFP49711 SPAAR-203ENST00000636776 1538 ntAPPRIS P1 BASIC17.16■□□□□ 0.34
CTCFP49711 KCNJ12-201ENST00000331718 2198 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
CTCFP49711 MPP1-205ENST00000413259 2195 ntTSL 2 BASIC17.16■□□□□ 0.34
CTCFP49711 AHR-201ENST00000242057 6276 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
CTCFP49711 TLE6-202ENST00000452088 1883 ntAPPRIS P3 TSL 1 (best) BASIC17.16■□□□□ 0.34
CTCFP49711 BID-213ENST00000615414 2236 ntTSL 5 BASIC17.16■□□□□ 0.34
CTCFP49711 THOC5-202ENST00000397871 2560 ntAPPRIS P1 TSL 5 BASIC17.16■□□□□ 0.34
CTCFP49711 FKBP6-204ENST00000431982 1446 ntAPPRIS ALT2 TSL 2 BASIC17.16■□□□□ 0.34
CTCFP49711 ZDHHC13-201ENST00000399351 2283 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
CTCFP49711 MRPS28-201ENST00000276585 850 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
CTCFP49711 ORMDL3-201ENST00000304046 2111 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
CTCFP49711 CFAP36-203ENST00000403007 759 ntTSL 2 BASIC17.16■□□□□ 0.34
CTCFP49711 AL391119.1-201ENST00000416563 271 ntTSL 5 BASIC17.16■□□□□ 0.34
CTCFP49711 AC092580.1-201ENST00000433998 658 ntBASIC17.16■□□□□ 0.34
CTCFP49711 RPL3P5-201ENST00000441645 1232 ntBASIC17.16■□□□□ 0.34
CTCFP49711 PRR7-AS1-204ENST00000514846 543 ntTSL 2 BASIC17.16■□□□□ 0.34
CTCFP49711 LINC01848-201ENST00000523446 518 ntTSL 3 BASIC17.16■□□□□ 0.34
CTCFP49711 NEU3-207ENST00000534628 746 ntTSL 2 BASIC17.16■□□□□ 0.34
CTCFP49711 AL356756.1-201ENST00000550941 551 ntTSL 3 BASIC17.16■□□□□ 0.34
CTCFP49711 CDIPT-AS1-202ENST00000565014 729 ntTSL 2 BASIC17.16■□□□□ 0.34
CTCFP49711 SRRM2-205ENST00000570971 1132 ntTSL 2 BASIC17.16■□□□□ 0.34
CTCFP49711 AC145343.1-201ENST00000579629 650 ntTSL 3 BASIC17.16■□□□□ 0.34
CTCFP49711 CYP4F36P-201ENST00000589193 186 ntBASIC17.16■□□□□ 0.34
CTCFP49711 AC010503.1-201ENST00000596027 520 ntTSL 5 BASIC17.16■□□□□ 0.34
CTCFP49711 AC254633.1-201ENST00000606790 345 ntBASIC17.16■□□□□ 0.34
CTCFP49711 AL512324.3-201ENST00000619383 882 ntBASIC17.16■□□□□ 0.34
CTCFP49711 AC002044.2-201ENST00000624910 970 ntBASIC17.16■□□□□ 0.34
CTCFP49711 NRP1-203ENST00000374821 1988 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
CTCFP49711 VPS16-203ENST00000380469 2318 ntTSL 2 BASIC17.16■□□□□ 0.34
CTCFP49711 CMTM3-202ENST00000424011 2330 ntAPPRIS P1 TSL 2 BASIC17.16■□□□□ 0.34
CTCFP49711 FAN1-207ENST00000565466 2304 ntTSL 2 BASIC17.16■□□□□ 0.34
CTCFP49711 PRDM8-201ENST00000339711 4095 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
CTCFP49711 RAB31-207ENST00000578921 4055 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
CTCFP49711 RELL1-201ENST00000314117 1326 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
CTCFP49711 TMPRSS3-202ENST00000398397 1342 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
CTCFP49711 GSAP-201ENST00000257626 3251 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
CTCFP49711 TLE2-203ENST00000443826 2238 ntTSL 2 BASIC17.16■□□□□ 0.34
CTCFP49711 ACHE-202ENST00000302913 2956 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
CTCFP49711 SCLT1-208ENST00000506368 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC17.16■□□□□ 0.34
CTCFP49711 STMN1-203ENST00000399728 1712 ntAPPRIS P1 TSL 2 BASIC17.16■□□□□ 0.34
CTCFP49711 IL11-201ENST00000264563 2281 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
CTCFP49711 CYP11A1-201ENST00000268053 1934 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
CTCFP49711 ANKRD33-201ENST00000301190 1935 ntTSL 2 BASIC17.15■□□□□ 0.34
CTCFP49711 GLUD2-201ENST00000328078 2493 ntAPPRIS P1 BASIC17.15■□□□□ 0.34
CTCFP49711 F11R-206ENST00000621309 4770 ntTSL 5 BASIC17.15■□□□□ 0.34
CTCFP49711 CLSTN1-201ENST00000361311 4647 ntAPPRIS P3 TSL 1 (best) BASIC17.15■□□□□ 0.34
CTCFP49711 MAGI3-203ENST00000369615 6508 ntAPPRIS P1 TSL 5 BASIC17.15■□□□□ 0.34
CTCFP49711 FRMD5-202ENST00000417257 5011 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
CTCFP49711 SGCE-204ENST00000428696 1409 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
CTCFP49711 ADGRB2-203ENST00000398538 4675 ntAPPRIS ALT2 TSL 5 BASIC17.15■□□□□ 0.34
CTCFP49711 LINC01165-201ENST00000445190 1623 ntBASIC17.15■□□□□ 0.34
CTCFP49711 ASCC2-201ENST00000307790 2793 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
CTCFP49711 MYLK2-201ENST00000375985 2787 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
CTCFP49711 LONRF3-201ENST00000304778 2989 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
CTCFP49711 TBRG4-203ENST00000395655 2225 ntTSL 2 BASIC17.15■□□□□ 0.34
CTCFP49711 COQ8B-202ENST00000324464 2443 ntAPPRIS P3 TSL 1 (best) BASIC17.15■□□□□ 0.34
CTCFP49711 ELMO1-209ENST00000448602 2621 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
CTCFP49711 RASA4-204ENST00000462172 2634 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
CTCFP49711 ABCB6-201ENST00000265316 3016 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
CTCFP49711 NPNT-201ENST00000305572 3003 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
CTCFP49711 LINC01523-201ENST00000425385 450 ntTSL 2 BASIC17.15■□□□□ 0.34
CTCFP49711 NME6-208ENST00000435684 599 ntTSL 2 BASIC17.15■□□□□ 0.34
CTCFP49711 AC117945.1-201ENST00000451375 463 ntTSL 3 BASIC17.15■□□□□ 0.34
CTCFP49711 AL355537.2-201ENST00000453367 375 ntTSL 2 BASIC17.15■□□□□ 0.34
CTCFP49711 AC138409.2-203ENST00000508395 553 ntTSL 4 BASIC17.15■□□□□ 0.34
CTCFP49711 URB1-AS1-201ENST00000534991 831 ntBASIC17.15■□□□□ 0.34
CTCFP49711 MIR3188-201ENST00000583494 85 ntBASIC17.15■□□□□ 0.34
CTCFP49711 AC004637.1-201ENST00000586675 482 ntTSL 3 BASIC17.15■□□□□ 0.34
CTCFP49711 TMEM205-210ENST00000588560 840 ntAPPRIS P1 TSL 2 BASIC17.15■□□□□ 0.34
CTCFP49711 AC092073.1-202ENST00000606020 653 ntTSL 3 BASIC17.15■□□□□ 0.34
CTCFP49711 AC006483.2-201ENST00000609813 515 ntBASIC17.15■□□□□ 0.34
CTCFP49711 AP000357.2-201ENST00000633827 597 ntTSL 2 BASIC17.15■□□□□ 0.34
CTCFP49711 TPM1-201ENST00000267996 1670 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
CTCFP49711 BICD2-201ENST00000356884 6427 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
CTCFP49711 AC007728.2-201ENST00000563315 2296 ntTSL 5 BASIC17.15■□□□□ 0.34
CTCFP49711 ZFAND5-204ENST00000376960 2686 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
CTCFP49711 SCAF1-201ENST00000360565 4306 ntAPPRIS P2 TSL 2 BASIC17.15■□□□□ 0.34
CTCFP49711 PCBP4-205ENST00000461554 2147 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
CTCFP49711 COX10-AS1-202ENST00000449363 1944 ntTSL 2 BASIC17.15■□□□□ 0.34
CTCFP49711 SLC27A5-201ENST00000263093 2361 ntAPPRIS P3 TSL 1 (best) BASIC17.15■□□□□ 0.34
CTCFP49711 NRXN1-229ENST00000628515 3243 ntTSL 5 BASIC17.15■□□□□ 0.34
CTCFP49711 WDTC1-202ENST00000361771 4275 ntAPPRIS P3 TSL 1 (best) BASIC17.15■□□□□ 0.34
CTCFP49711 MGMT-201ENST00000306010 1759 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
CTCFP49711 LINC01118-203ENST00000479311 1588 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
CTCFP49711 SLC12A9-201ENST00000354161 3273 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
CTCFP49711 PCTP-201ENST00000268896 2044 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.34
CTCFP49711 SUFU-202ENST00000369902 5001 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.34
CTCFP49711 IRX6-201ENST00000290552 3128 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.34
CTCFP49711 CORO2B-201ENST00000261861 3569 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
CTCFP49711 CORO2B-204ENST00000566799 3566 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
CTCFP49711 KRT76-201ENST00000332411 2529 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
CTCFP49711 LINC02228-204ENST00000642115 2962 ntBASIC17.14■□□□□ 0.33
CTCFP49711 CADPS2-204ENST00000412584 4308 ntAPPRIS P2 TSL 1 (best) BASIC17.14■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 38.8 ms