Protein–RNA interactions for Protein: P48380

RFX3, Transcription factor RFX3, humanhuman

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3P48380 TC2N-206ENST00000556018 1770 ntTSL 2 BASIC14.11□□□□□ -0.15
RFX3P48380 ALDH1B1-201ENST00000377698 3066 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
RFX3P48380 PIGT-202ENST00000279036 2245 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
RFX3P48380 TTC29-208ENST00000513335 2226 ntAPPRIS ALT2 TSL 2 BASIC14.11□□□□□ -0.15
RFX3P48380 TRIM29-210ENST00000528870 2217 ntTSL 2 BASIC14.11□□□□□ -0.15
RFX3P48380 SCAMP4-202ENST00000409472 2394 ntTSL 2 BASIC14.11□□□□□ -0.15
RFX3P48380 LILRP1-201ENST00000444199 1370 ntBASIC14.11□□□□□ -0.15
RFX3P48380 SLC4A9-203ENST00000506545 2838 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
RFX3P48380 TAF1C-216ENST00000566732 2972 ntAPPRIS ALT2 TSL 2 BASIC14.11□□□□□ -0.15
RFX3P48380 RGMB-201ENST00000308234 4580 ntAPPRIS P2 TSL 1 (best) BASIC14.11□□□□□ -0.15
RFX3P48380 HOXC11-202ENST00000546378 3261 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
RFX3P48380 FAM219B-201ENST00000357635 3550 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
RFX3P48380 B3GNT7-201ENST00000287590 3706 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
RFX3P48380 EXOC6B-201ENST00000272427 5918 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
RFX3P48380 SAMD4A-213ENST00000631086 6677 ntTSL 5 BASIC14.11□□□□□ -0.15
RFX3P48380 HSPB7-202ENST00000375718 2415 ntTSL 2 BASIC14.11□□□□□ -0.15
RFX3P48380 TMPRSS6-204ENST00000406856 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC14.11□□□□□ -0.15
RFX3P48380 NFATC4-221ENST00000555453 3169 ntAPPRIS ALT2 TSL 1 (best) BASIC14.11□□□□□ -0.15
RFX3P48380 PRKD2-202ENST00000433867 3321 ntAPPRIS P3 TSL 5 BASIC14.11□□□□□ -0.15
RFX3P48380 SS18L2-201ENST00000011691 781 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
RFX3P48380 RSPH3-201ENST00000252655 2175 ntAPPRIS P2 TSL 1 (best) BASIC14.11□□□□□ -0.15
RFX3P48380 BANF1-201ENST00000312175 1155 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
RFX3P48380 ZNF18-201ENST00000322748 2767 ntAPPRIS P3 TSL 2 BASIC14.11□□□□□ -0.15
RFX3P48380 BEX2-202ENST00000372677 899 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
RFX3P48380 VLDLR-202ENST00000382099 3240 ntAPPRIS ALT1 TSL 1 (best) BASIC14.11□□□□□ -0.15
RFX3P48380 MAGEA12-203ENST00000393900 1299 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
RFX3P48380 STMN1-204ENST00000426559 948 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
RFX3P48380 ARFIP1-204ENST00000429148 1599 ntTSL 2 BASIC14.11□□□□□ -0.15
RFX3P48380 PRAP1-201ENST00000433452 971 ntAPPRIS P3 TSL 1 (best) BASIC14.11□□□□□ -0.15
RFX3P48380 AC004522.2-201ENST00000456499 680 ntTSL 3 BASIC14.11□□□□□ -0.15
RFX3P48380 AC055854.1-201ENST00000523627 570 ntTSL 4 BASIC14.11□□□□□ -0.15
RFX3P48380 ARL2-204ENST00000529384 830 ntAPPRIS P1 TSL 3 BASIC14.11□□□□□ -0.15
RFX3P48380 PLEKHA7-214ENST00000532079 565 ntTSL 5 BASIC14.11□□□□□ -0.15
RFX3P48380 AC005342.2-201ENST00000544163 315 ntTSL 3 BASIC14.11□□□□□ -0.15
RFX3P48380 C12orf73-207ENST00000549478 1446 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
RFX3P48380 PDE1B-207ENST00000550620 2150 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
RFX3P48380 PAM16-204ENST00000571941 674 ntTSL 3 BASIC14.11□□□□□ -0.15
RFX3P48380 MRPS23-202ENST00000578444 580 ntTSL 2 BASIC14.11□□□□□ -0.15
RFX3P48380 AC004477.1-202ENST00000584428 539 ntTSL 2 BASIC14.11□□□□□ -0.15
RFX3P48380 METTL26-214ENST00000614890 801 ntTSL 3 BASIC14.11□□□□□ -0.15
RFX3P48380 AL033527.5-201ENST00000641382 801 ntBASIC14.11□□□□□ -0.15
RFX3P48380 MGLL-201ENST00000265052 4642 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
RFX3P48380 ADRB2-201ENST00000305988 3443 ntAPPRIS P1 BASIC14.11□□□□□ -0.15
RFX3P48380 XRCC1-201ENST00000262887 2802 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
RFX3P48380 C22orf34-201ENST00000343999 2816 ntTSL 2 BASIC14.11□□□□□ -0.15
RFX3P48380 FECH-202ENST00000382873 2526 ntAPPRIS ALT2 TSL 2 BASIC14.11□□□□□ -0.15
RFX3P48380 MBD1-212ENST00000585672 2532 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
RFX3P48380 CYP4X1-201ENST00000371901 2357 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
RFX3P48380 CAMLG-201ENST00000297156 2221 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
RFX3P48380 UPB1-202ENST00000382760 1928 ntTSL 5 BASIC14.11□□□□□ -0.15
RFX3P48380 KLC4-204ENST00000453940 1945 ntTSL 2 BASIC14.11□□□□□ -0.15
RFX3P48380 KRT32-201ENST00000225899 1750 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
RFX3P48380 TGFB1I1-201ENST00000361773 1773 ntAPPRIS P3 TSL 1 (best) BASIC14.11□□□□□ -0.15
RFX3P48380 PPM1F-202ENST00000397495 1778 ntTSL 2 BASIC14.11□□□□□ -0.15
RFX3P48380 MPDU1-201ENST00000250124 1601 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
RFX3P48380 GABARAP-201ENST00000302386 1634 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
RFX3P48380 RHD-206ENST00000423810 1637 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
RFX3P48380 NEU3-206ENST00000532963 1643 ntTSL 2 BASIC14.11□□□□□ -0.15
RFX3P48380 ITPK1-207ENST00000555495 3035 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
RFX3P48380 GTF2I-215ENST00000614986 4415 ntAPPRIS ALT1 TSL 1 (best) BASIC14.11□□□□□ -0.15
RFX3P48380 GTF2I-221ENST00000621734 4412 ntAPPRIS ALT2 TSL 1 (best) BASIC14.11□□□□□ -0.15
RFX3P48380 AC093525.8-201ENST00000624099 1342 ntBASIC14.11□□□□□ -0.15
RFX3P48380 SCYL1-208ENST00000527009 2586 ntTSL 5 BASIC14.11□□□□□ -0.15
RFX3P48380 LINC00552-201ENST00000625151 2579 ntBASIC14.11□□□□□ -0.15
RFX3P48380 MIRLET7BHG-203ENST00000435439 2264 ntTSL 2 BASIC14.11□□□□□ -0.15
RFX3P48380 WIZ-203ENST00000545156 4466 ntAPPRIS ALT2 TSL 1 (best) BASIC14.11□□□□□ -0.15
RFX3P48380 ADAMTS13-202ENST00000356589 4349 ntAPPRIS ALT2 TSL 1 (best) BASIC14.11□□□□□ -0.15
RFX3P48380 AC104581.4-201ENST00000623126 3052 ntBASIC14.11□□□□□ -0.15
RFX3P48380 PFKFB4-201ENST00000232375 3586 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
RFX3P48380 CDKN2AIP-201ENST00000302350 2646 ntTSL 2 BASIC14.11□□□□□ -0.15
RFX3P48380 PRF1-201ENST00000373209 2492 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
RFX3P48380 SF1-209ENST00000433274 2317 ntTSL 2 BASIC14.1□□□□□ -0.15
RFX3P48380 TMEM170A-207ENST00000569540 2331 ntTSL 2 BASIC14.1□□□□□ -0.15
RFX3P48380 MIR193BHG-211ENST00000641433 5365 ntBASIC14.1□□□□□ -0.15
RFX3P48380 IL12A-201ENST00000305579 1522 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
RFX3P48380 BCS1L-203ENST00000392110 1525 ntAPPRIS P1 TSL 2 BASIC14.1□□□□□ -0.15
RFX3P48380 MYLK-201ENST00000346322 5892 ntAPPRIS ALT2 TSL 5 BASIC14.1□□□□□ -0.15
RFX3P48380 SEC13-201ENST00000337354 1363 ntAPPRIS ALT1 TSL 1 (best) BASIC14.1□□□□□ -0.15
RFX3P48380 IRAK3-201ENST00000261233 8663 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
RFX3P48380 TRIM56-201ENST00000306085 10952 ntAPPRIS P2 TSL 1 (best) BASIC14.1□□□□□ -0.15
RFX3P48380 DMTN-205ENST00000432128 2508 ntTSL 5 BASIC14.1□□□□□ -0.15
RFX3P48380 GRM1-203ENST00000361719 6754 ntAPPRIS P3 TSL 5 BASIC14.1□□□□□ -0.15
RFX3P48380 SLC35A2-204ENST00000376521 3047 ntAPPRIS ALT1 TSL 1 (best) BASIC14.1□□□□□ -0.15
RFX3P48380 LRRC6-205ENST00000519595 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC14.1□□□□□ -0.15
RFX3P48380 DUS4L-201ENST00000265720 2220 ntAPPRIS P1 TSL 2 BASIC14.1□□□□□ -0.15
RFX3P48380 SLC35C2-204ENST00000372230 2246 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
RFX3P48380 BHMG1-201ENST00000457052 2749 ntAPPRIS P1 TSL 5 BASIC14.1□□□□□ -0.15
RFX3P48380 CDH1-201ENST00000261769 4889 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
RFX3P48380 PAK6-202ENST00000455577 4215 ntTSL 2 BASIC14.1□□□□□ -0.15
RFX3P48380 CTSD-211ENST00000637387 1597 ntAPPRIS ALT2 TSL 5 BASIC14.1□□□□□ -0.15
RFX3P48380 PSMC1-201ENST00000261303 4448 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
RFX3P48380 CA10-201ENST00000285273 2914 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
RFX3P48380 MAEL-202ENST00000367872 1908 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
RFX3P48380 DMTN-203ENST00000381470 2601 ntTSL 5 BASIC14.1□□□□□ -0.15
RFX3P48380 LHB-201ENST00000221421 514 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
RFX3P48380 RTKN-202ENST00000272430 2142 ntAPPRIS ALT1 TSL 1 (best) BASIC14.1□□□□□ -0.15
RFX3P48380 PPFIA4-202ENST00000295706 6395 ntAPPRIS ALT2 TSL 5 BASIC14.1□□□□□ -0.15
RFX3P48380 FIBP-201ENST00000338369 1261 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
RFX3P48380 RNU1-114P-201ENST00000365297 166 ntBASIC14.1□□□□□ -0.15
RFX3P48380 MGST3-203ENST00000367885 680 ntTSL 2 BASIC14.1□□□□□ -0.15
Retrieved 100 of 98,524 protein–RNA pairs in 100 ms