Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 RCOR1-201ENST00000262241 5754 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
PTPN9P43378 MYADML-201ENST00000474610 2147 ntBASIC15.47■□□□□ 0.07
PTPN9P43378 ATP6V1C1-202ENST00000518738 2130 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
PTPN9P43378 TNFAIP8L3-201ENST00000327536 2262 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
PTPN9P43378 PRKX-201ENST00000262848 6031 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
PTPN9P43378 TXNDC5-204ENST00000473453 1301 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
PTPN9P43378 ZFPM2-206ENST00000520492 3960 ntTSL 2 BASIC15.47■□□□□ 0.07
PTPN9P43378 CAMK2A-203ENST00000398376 1493 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
PTPN9P43378 ERN2-202ENST00000457008 3169 ntAPPRIS ALT2 TSL 1 (best) BASIC15.47■□□□□ 0.07
PTPN9P43378 BAIAP2-201ENST00000321280 1939 ntAPPRIS ALT2 TSL 1 (best) BASIC15.47■□□□□ 0.07
PTPN9P43378 SUOX-204ENST00000394115 2394 ntAPPRIS P1 TSL 2 BASIC15.47■□□□□ 0.07
PTPN9P43378 TRAF7-201ENST00000326181 3700 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
PTPN9P43378 DEF8-210ENST00000563594 4450 ntAPPRIS P4 TSL 1 (best) BASIC15.47■□□□□ 0.07
PTPN9P43378 LCN9-201ENST00000277526 531 ntAPPRIS P2 TSL 5 BASIC15.47■□□□□ 0.07
PTPN9P43378 GOLGA8DP-202ENST00000341390 2184 ntBASIC15.47■□□□□ 0.07
PTPN9P43378 AC139712.1-201ENST00000378256 1875 ntBASIC15.47■□□□□ 0.07
PTPN9P43378 PSORS1C3-201ENST00000412143 593 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
PTPN9P43378 AL365199.1-201ENST00000421320 1714 ntTSL 2 BASIC15.47■□□□□ 0.07
PTPN9P43378 LARGE-AS1-202ENST00000424291 1065 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
PTPN9P43378 NDUFC1-210ENST00000539387 725 ntAPPRIS P1 TSL 2 BASIC15.47■□□□□ 0.07
PTPN9P43378 AC027601.2-201ENST00000571085 805 ntTSL 5 BASIC15.47■□□□□ 0.07
PTPN9P43378 MIR4683-201ENST00000579659 81 ntBASIC15.47■□□□□ 0.07
PTPN9P43378 CCDC68-204ENST00000591504 4132 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
PTPN9P43378 DKKL1-202ENST00000594268 524 ntAPPRIS ALT2 TSL 2 BASIC15.47■□□□□ 0.07
PTPN9P43378 LENG8-208ENST00000610347 5789 ntAPPRIS ALT2 TSL 5 BASIC15.47■□□□□ 0.07
PTPN9P43378 LCN9-204ENST00000619315 528 ntAPPRIS ALT2 TSL 1 (best) BASIC15.47■□□□□ 0.07
PTPN9P43378 LINC01667-202ENST00000623919 1422 ntTSL 5 BASIC15.47■□□□□ 0.07
PTPN9P43378 NIN-203ENST00000382041 6496 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
PTPN9P43378 C3orf62-201ENST00000343010 4235 ntAPPRIS P2 TSL 1 (best) BASIC15.47■□□□□ 0.07
PTPN9P43378 DTX3-202ENST00000548198 3199 ntAPPRIS P3 TSL 2 BASIC15.47■□□□□ 0.07
PTPN9P43378 AMZ1-201ENST00000312371 5516 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
PTPN9P43378 B4GALT3-213ENST00000622395 2414 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
PTPN9P43378 CAMSAP3-202ENST00000446248 4179 ntAPPRIS ALT2 TSL 1 (best) BASIC15.47■□□□□ 0.07
PTPN9P43378 AL121757.1-201ENST00000430097 1836 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
PTPN9P43378 FANCA-213ENST00000563673 1694 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
PTPN9P43378 NOS2P2-202ENST00000639528 1659 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
PTPN9P43378 FBXO8-202ENST00000503293 1546 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
PTPN9P43378 FOXB1-201ENST00000396057 2957 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
PTPN9P43378 PHF3-209ENST00000509330 2969 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
PTPN9P43378 SPHK2-210ENST00000599748 2683 ntAPPRIS ALT2 TSL 1 (best) BASIC15.47■□□□□ 0.07
PTPN9P43378 TIMP2-201ENST00000262768 3652 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
PTPN9P43378 HCK-209ENST00000538448 2215 ntAPPRIS ALT2 TSL 2 BASIC15.47■□□□□ 0.07
PTPN9P43378 AC007603.1-201ENST00000563124 2085 ntTSL 2 BASIC15.47■□□□□ 0.07
PTPN9P43378 SV2A-201ENST00000369145 2903 ntTSL 2 BASIC15.47■□□□□ 0.07
PTPN9P43378 SEPT8-206ENST00000378706 4168 ntAPPRIS ALT1 TSL 5 BASIC15.46■□□□□ 0.07
PTPN9P43378 ACSL1-208ENST00000507295 2490 ntTSL 2 BASIC15.46■□□□□ 0.07
PTPN9P43378 MED29-204ENST00000599213 2490 ntAPPRIS ALT2 TSL 1 (best) BASIC15.46■□□□□ 0.07
PTPN9P43378 TC2N-201ENST00000340892 4708 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
PTPN9P43378 SLC41A3-204ENST00000383598 2330 ntAPPRIS P3 TSL 2 BASIC15.46■□□□□ 0.07
PTPN9P43378 F10-203ENST00000409306 1450 ntTSL 3 BASIC15.46■□□□□ 0.07
PTPN9P43378 LEF1-216ENST00000510624 1472 ntTSL 2 BASIC15.46■□□□□ 0.07
PTPN9P43378 VWA7-201ENST00000375688 2881 ntAPPRIS P1 TSL 5 BASIC15.46■□□□□ 0.07
PTPN9P43378 AL109910.1-201ENST00000452071 1330 ntTSL 2 BASIC15.46■□□□□ 0.07
PTPN9P43378 CENPBD1P1-204ENST00000487264 1308 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
PTPN9P43378 ZFP41-203ENST00000520584 3284 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
PTPN9P43378 MLF1-217ENST00000619577 2290 ntTSL 5 BASIC15.46■□□□□ 0.07
PTPN9P43378 CYP1A1-203ENST00000395049 1594 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
PTPN9P43378 RWDD4-205ENST00000510968 1551 ntTSL 4 BASIC15.46■□□□□ 0.07
PTPN9P43378 FP565260.2-201ENST00000623476 1599 ntAPPRIS P1 TSL 3 BASIC15.46■□□□□ 0.07
PTPN9P43378 TMEM139-201ENST00000359333 2383 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
PTPN9P43378 RABL6-211ENST00000629216 1416 ntAPPRIS ALT2 TSL 5 BASIC15.46■□□□□ 0.07
PTPN9P43378 STXBP6-201ENST00000323944 4132 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
PTPN9P43378 AL031280.1-201ENST00000436991 2224 ntTSL 2 BASIC15.46■□□□□ 0.07
PTPN9P43378 AC005089.1-201ENST00000619486 2241 ntBASIC15.46■□□□□ 0.07
PTPN9P43378 SCYL1-201ENST00000270176 2642 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
PTPN9P43378 ALG5-201ENST00000239891 1154 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
PTPN9P43378 ANKRD19P-201ENST00000338192 862 ntBASIC15.46■□□□□ 0.07
PTPN9P43378 MAPK15-203ENST00000395108 765 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
PTPN9P43378 PEMT-203ENST00000395782 895 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
PTPN9P43378 SELENOM-201ENST00000400299 694 ntAPPRIS P2 TSL 1 (best) BASIC15.46■□□□□ 0.07
PTPN9P43378 MIR1909-201ENST00000411312 80 ntBASIC15.46■□□□□ 0.07
PTPN9P43378 AL450469.1-201ENST00000418953 461 ntTSL 2 BASIC15.46■□□□□ 0.07
PTPN9P43378 AC026954.1-201ENST00000429771 1293 ntBASIC15.46■□□□□ 0.07
PTPN9P43378 RPS24-203ENST00000435275 656 ntAPPRIS ALT1 TSL 2 BASIC15.46■□□□□ 0.07
PTPN9P43378 KCNQ1-AS1-201ENST00000440887 1084 ntTSL 5 BASIC15.46■□□□□ 0.07
PTPN9P43378 ACA64.2-201ENST00000459014 129 ntBASIC15.46■□□□□ 0.07
PTPN9P43378 KLF3-AS1-204ENST00000505240 567 ntTSL 4 BASIC15.46■□□□□ 0.07
PTPN9P43378 AP001790.1-201ENST00000511947 570 ntTSL 4 BASIC15.46■□□□□ 0.07
PTPN9P43378 AP002992.1-201ENST00000527519 491 ntTSL 3 BASIC15.46■□□□□ 0.07
PTPN9P43378 OMP-201ENST00000529803 492 ntAPPRIS P1 BASIC15.46■□□□□ 0.07
PTPN9P43378 AP006333.2-201ENST00000544948 732 ntTSL 3 BASIC15.46■□□□□ 0.07
PTPN9P43378 DIO3OS-203ENST00000554441 1068 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
PTPN9P43378 AP000229.1-202ENST00000609365 559 ntTSL 4 BASIC15.46■□□□□ 0.07
PTPN9P43378 RPS24-214ENST00000613865 538 ntTSL 5 BASIC15.46■□□□□ 0.07
PTPN9P43378 KLF3-AS1-207ENST00000620339 558 ntTSL 4 BASIC15.46■□□□□ 0.07
PTPN9P43378 AC024941.2-201ENST00000625763 493 ntTSL 2 BASIC15.46■□□□□ 0.07
PTPN9P43378 AC008687.7-202ENST00000637404 953 ntBASIC15.46■□□□□ 0.07
PTPN9P43378 ZNF385A-205ENST00000546970 2494 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
PTPN9P43378 ZBTB7C-204ENST00000586438 4899 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
PTPN9P43378 MFRP-205ENST00000619721 3917 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
PTPN9P43378 KIAA0368-201ENST00000259335 7391 ntAPPRIS P2 TSL 1 (best) BASIC15.46■□□□□ 0.07
PTPN9P43378 AL162231.1-201ENST00000421828 1525 ntAPPRIS P2 TSL 1 (best) BASIC15.46■□□□□ 0.07
PTPN9P43378 PDP1-201ENST00000297598 4272 ntAPPRIS P3 TSL 1 (best) BASIC15.46■□□□□ 0.07
PTPN9P43378 MUM1-201ENST00000415183 2837 ntAPPRIS ALT2 TSL 1 (best) BASIC15.46■□□□□ 0.07
PTPN9P43378 AKAP12-201ENST00000253332 6597 ntAPPRIS P4 TSL 1 (best) BASIC15.46■□□□□ 0.06
PTPN9P43378 AC015688.4-201ENST00000580780 1647 ntBASIC15.46■□□□□ 0.06
PTPN9P43378 TBC1D8-202ENST00000409318 3803 ntTSL 5 BASIC15.46■□□□□ 0.06
PTPN9P43378 PRR23C-201ENST00000413199 2791 ntAPPRIS P1 BASIC15.46■□□□□ 0.06
PTPN9P43378 MSI2-201ENST00000284073 6364 ntAPPRIS P4 TSL 1 (best) BASIC15.46■□□□□ 0.06
PTPN9P43378 SPATA7-203ENST00000393545 2123 ntAPPRIS P3 TSL 1 (best) BASIC15.46■□□□□ 0.06
Retrieved 100 of 98,524 protein–RNA pairs in 30 ms