Protein–RNA interactions for Protein: P41235

HNF4A, Hepatocyte nuclear factor 4-alpha, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HNF4AP41235 AC008805.2-201ENST00000590069 435 ntTSL 5 BASIC14.55□□□□□ -0.08
HNF4AP41235 ATF5-205ENST00000600336 682 ntTSL 2 BASIC14.55□□□□□ -0.08
HNF4AP41235 AL358472.5-202ENST00000641448 1267 ntBASIC14.55□□□□□ -0.08
HNF4AP41235 SLC25A3-217ENST00000552981 1351 ntAPPRIS ALT1 TSL 1 (best) BASIC14.55□□□□□ -0.08
HNF4AP41235 ASNA1-204ENST00000591090 1368 ntAPPRIS P1 TSL 5 BASIC14.55□□□□□ -0.08
HNF4AP41235 RSPO1-204ENST00000615459 2331 ntTSL 2 BASIC14.55□□□□□ -0.08
HNF4AP41235 GPC3-202ENST00000394299 2379 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
HNF4AP41235 AC067750.1-201ENST00000608826 6545 ntBASIC14.55□□□□□ -0.08
HNF4AP41235 AC092384.2-204ENST00000565053 2566 ntTSL 2 BASIC14.55□□□□□ -0.08
HNF4AP41235 RIC1-201ENST00000251879 4127 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
HNF4AP41235 AKAP7-204ENST00000431975 2954 ntAPPRIS P1 TSL 2 BASIC14.55□□□□□ -0.08
HNF4AP41235 FAM84B-201ENST00000304916 5404 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
HNF4AP41235 MSI2-202ENST00000322684 1860 ntAPPRIS ALT2 TSL 2 BASIC14.55□□□□□ -0.08
HNF4AP41235 PVR-202ENST00000344956 3166 ntAPPRIS ALT2 TSL 5 BASIC14.55□□□□□ -0.08
HNF4AP41235 ABHD16A-202ENST00000440843 1906 ntTSL 2 BASIC14.54□□□□□ -0.08
HNF4AP41235 STIP1-207ENST00000538945 1900 ntTSL 2 BASIC14.54□□□□□ -0.08
HNF4AP41235 FAM114A2-215ENST00000522858 3379 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
HNF4AP41235 HTR3E-202ENST00000415389 2139 ntAPPRIS ALT2 TSL 1 (best) BASIC14.54□□□□□ -0.08
HNF4AP41235 CCDC116-201ENST00000292779 2260 ntAPPRIS P2 TSL 1 (best) BASIC14.54□□□□□ -0.08
HNF4AP41235 ADD1-204ENST00000398123 2361 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
HNF4AP41235 PPM1A-203ENST00000395076 8184 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
HNF4AP41235 BHMG1-201ENST00000457052 2749 ntAPPRIS P1 TSL 5 BASIC14.54□□□□□ -0.08
HNF4AP41235 ENAH-203ENST00000366843 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC14.54□□□□□ -0.08
HNF4AP41235 NBPF26-208ENST00000620612 4602 ntAPPRIS P1 TSL 5 BASIC14.54□□□□□ -0.08
HNF4AP41235 EDIL3-201ENST00000296591 4727 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
HNF4AP41235 AFDN-205ENST00000392108 6812 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
HNF4AP41235 PERM1-201ENST00000341290 3035 ntAPPRIS ALT2 TSL 2 BASIC14.54□□□□□ -0.08
HNF4AP41235 MAPK7-203ENST00000395602 3059 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
HNF4AP41235 MN1-201ENST00000302326 7556 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
HNF4AP41235 KIAA0907-201ENST00000368319 1155 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
HNF4AP41235 PNRC1-203ENST00000369472 816 ntTSL 2 BASIC14.54□□□□□ -0.08
HNF4AP41235 ADIRF-201ENST00000372013 917 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
HNF4AP41235 PFDN6-202ENST00000374607 598 ntAPPRIS P1 TSL 2 BASIC14.54□□□□□ -0.08
HNF4AP41235 PFDN6-203ENST00000374610 521 ntAPPRIS P1 TSL 2 BASIC14.54□□□□□ -0.08
HNF4AP41235 ARL6IP4-207ENST00000426960 910 ntAPPRIS ALT2 TSL 3 BASIC14.54□□□□□ -0.08
HNF4AP41235 NEU3-203ENST00000529024 581 ntTSL 3 BASIC14.54□□□□□ -0.08
HNF4AP41235 AC009486.1-201ENST00000569860 813 ntBASIC14.54□□□□□ -0.08
HNF4AP41235 KSR1-207ENST00000578981 748 ntTSL 4 BASIC14.54□□□□□ -0.08
HNF4AP41235 ZNF180-204ENST00000586637 1023 ntTSL 5 BASIC14.54□□□□□ -0.08
HNF4AP41235 FAM66A-202ENST00000602658 546 ntTSL 5 BASIC14.54□□□□□ -0.08
HNF4AP41235 SCP2-217ENST00000640998 1101 ntTSL 5 BASIC14.54□□□□□ -0.08
HNF4AP41235 CD1B-201ENST00000368168 1395 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
HNF4AP41235 CERS6-202ENST00000392687 6851 ntAPPRIS ALT1 TSL 1 (best) BASIC14.54□□□□□ -0.08
HNF4AP41235 FAM103A1-201ENST00000304191 1568 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
HNF4AP41235 TMPRSS4-214ENST00000523251 1689 ntAPPRIS ALT2 TSL 2 BASIC14.54□□□□□ -0.08
HNF4AP41235 SLC1A5-201ENST00000412532 1750 ntTSL 2 BASIC14.54□□□□□ -0.08
HNF4AP41235 AC055811.4-201ENST00000624039 1754 ntBASIC14.54□□□□□ -0.08
HNF4AP41235 ZNF587-203ENST00000423137 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC14.54□□□□□ -0.08
HNF4AP41235 ABCB7-202ENST00000339447 2234 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
HNF4AP41235 GAD2-201ENST00000259271 2462 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
HNF4AP41235 CCDC110-209ENST00000510617 2592 ntAPPRIS ALT2 TSL 5 BASIC14.54□□□□□ -0.08
HNF4AP41235 PPFIA3-203ENST00000602351 4341 ntTSL 5 BASIC14.53□□□□□ -0.08
HNF4AP41235 PDE7A-203ENST00000401827 3673 ntAPPRIS ALT1 TSL 1 (best) BASIC14.53□□□□□ -0.08
HNF4AP41235 FGD2-201ENST00000274963 3046 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
HNF4AP41235 SEPT9-208ENST00000541152 3026 ntAPPRIS ALT2 TSL 1 (best) BASIC14.53□□□□□ -0.08
HNF4AP41235 ADORA1-201ENST00000309502 2896 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
HNF4AP41235 CSDC2-201ENST00000306149 2777 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
HNF4AP41235 IMPDH1-203ENST00000354269 2580 ntTSL 2 BASIC14.53□□□□□ -0.08
HNF4AP41235 RSPO1-202ENST00000401068 2320 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
HNF4AP41235 CHEK2-204ENST00000382580 1971 ntAPPRIS ALT2 TSL 1 (best) BASIC14.53□□□□□ -0.08
HNF4AP41235 RABL2A-206ENST00000409842 1979 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
HNF4AP41235 KAT5-216ENST00000534650 1875 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
HNF4AP41235 PCBP2-202ENST00000359462 1814 ntAPPRIS ALT1 TSL 1 (best) BASIC14.53□□□□□ -0.08
HNF4AP41235 YWHAE-208ENST00000571732 1818 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
HNF4AP41235 ABCB8-212ENST00000477719 1625 ntTSL 5 BASIC14.53□□□□□ -0.08
HNF4AP41235 SFMBT1-201ENST00000394752 4548 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
HNF4AP41235 PGPEP1-201ENST00000252813 1409 ntTSL 2 BASIC14.53□□□□□ -0.08
HNF4AP41235 GCLC-201ENST00000229416 3813 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
HNF4AP41235 APOA1-201ENST00000236850 1227 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
HNF4AP41235 NINJ2-201ENST00000305108 1252 ntAPPRIS P3 TSL 1 (best) BASIC14.53□□□□□ -0.08
HNF4AP41235 VAPA-201ENST00000340541 1227 ntTSL 5 BASIC14.53□□□□□ -0.08
HNF4AP41235 APOA1-205ENST00000375329 927 ntTSL 2 BASIC14.53□□□□□ -0.08
HNF4AP41235 NDUFC1-203ENST00000394228 761 ntAPPRIS P1 TSL 2 BASIC14.53□□□□□ -0.08
HNF4AP41235 BLCAP-202ENST00000397131 633 ntAPPRIS P1 TSL 3 BASIC14.53□□□□□ -0.08
HNF4AP41235 BLCAP-203ENST00000397134 566 ntAPPRIS P1 TSL 4 BASIC14.53□□□□□ -0.08
HNF4AP41235 CRYAA-202ENST00000398132 826 ntTSL 2 BASIC14.53□□□□□ -0.08
HNF4AP41235 TNFRSF14-202ENST00000409119 896 ntAPPRIS ALT2 TSL 3 BASIC14.53□□□□□ -0.08
HNF4AP41235 AC243836.1-201ENST00000416696 438 ntTSL 3 BASIC14.53□□□□□ -0.08
HNF4AP41235 CR589904.1-201ENST00000437830 732 ntTSL 5 BASIC14.53□□□□□ -0.08
HNF4AP41235 AL035588.1-201ENST00000438967 408 ntTSL 3 BASIC14.53□□□□□ -0.08
HNF4AP41235 SERF1A-205ENST00000507348 663 ntTSL 2 BASIC14.53□□□□□ -0.08
HNF4AP41235 AC093879.1-201ENST00000508959 1176 ntTSL 2 BASIC14.53□□□□□ -0.08
HNF4AP41235 AC012640.1-201ENST00000509915 688 ntTSL 3 BASIC14.53□□□□□ -0.08
HNF4AP41235 MRNIP-212ENST00000520698 902 ntAPPRIS ALT2 TSL 2 BASIC14.53□□□□□ -0.08
HNF4AP41235 AP000808.2-201ENST00000542410 569 ntTSL 4 BASIC14.53□□□□□ -0.08
HNF4AP41235 GCHFR-206ENST00000561160 572 ntTSL 3 BASIC14.53□□□□□ -0.08
HNF4AP41235 AC011489.1-202ENST00000586556 618 ntTSL 2 BASIC14.53□□□□□ -0.08
HNF4AP41235 FP236240.1-204ENST00000624932 712 ntTSL 2 BASIC14.53□□□□□ -0.08
HNF4AP41235 FKBP4-208ENST00000630279 156 ntTSL 5 BASIC14.53□□□□□ -0.08
HNF4AP41235 ARL10-201ENST00000310389 10845 ntAPPRIS P1 TSL 2 BASIC14.53□□□□□ -0.08
HNF4AP41235 MBNL1-205ENST00000355460 5941 ntAPPRIS ALT1 TSL 1 (best) BASIC14.53□□□□□ -0.08
HNF4AP41235 UBR2-201ENST00000372899 7857 ntAPPRIS P2 TSL 1 (best) BASIC14.53□□□□□ -0.08
HNF4AP41235 UBR2-202ENST00000372901 7857 ntAPPRIS ALT1 TSL 5 BASIC14.53□□□□□ -0.08
HNF4AP41235 FAM186B-201ENST00000257894 2944 ntAPPRIS P2 TSL 1 (best) BASIC14.53□□□□□ -0.08
HNF4AP41235 IL17RA-204ENST00000612619 8506 ntAPPRIS ALT2 TSL 5 BASIC14.53□□□□□ -0.08
HNF4AP41235 SLC39A1-204ENST00000368623 2723 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
HNF4AP41235 SCUBE1-202ENST00000360835 9808 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
HNF4AP41235 ZC3H4-201ENST00000253048 6119 ntAPPRIS P2 TSL 1 (best) BASIC14.53□□□□□ -0.08
HNF4AP41235 CCHCR1-201ENST00000376266 2625 ntAPPRIS P3 TSL 1 (best) BASIC14.53□□□□□ -0.08
HNF4AP41235 FBN3-205ENST00000600128 9362 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Retrieved 100 of 98,524 protein–RNA pairs in 44.2 ms