Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 SLC26A1-201ENST00000361661 3660 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
SOX3P41225 PES1-201ENST00000335214 1988 ntAPPRIS ALT1 TSL 1 (best) BASIC14.13□□□□□ -0.15
SOX3P41225 KLF11-205ENST00000535335 4033 ntAPPRIS ALT2 TSL 2 BASIC14.12□□□□□ -0.15
SOX3P41225 PPP1R1B-205ENST00000579000 1466 ntTSL 5 BASIC14.12□□□□□ -0.15
SOX3P41225 IRF4-201ENST00000380956 5331 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
SOX3P41225 CYB561-201ENST00000360793 3001 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
SOX3P41225 AL158070.2-201ENST00000623713 1621 ntBASIC14.12□□□□□ -0.15
SOX3P41225 ZKSCAN7-201ENST00000273320 3477 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
SOX3P41225 COL11A2-202ENST00000361917 6104 ntAPPRIS ALT2 TSL 5 BASIC14.12□□□□□ -0.15
SOX3P41225 MBD1-209ENST00000398495 2178 ntTSL 5 BASIC14.12□□□□□ -0.15
SOX3P41225 GAS2L1-209ENST00000618518 3382 ntAPPRIS P1 TSL 2 BASIC14.12□□□□□ -0.15
SOX3P41225 MYH11-201ENST00000300036 6029 ntAPPRIS P3 TSL 1 (best) BASIC14.12□□□□□ -0.15
SOX3P41225 CYB5D2-201ENST00000301391 1910 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
SOX3P41225 ZBTB17-202ENST00000375743 2745 ntAPPRIS P3 TSL 1 (best) BASIC14.12□□□□□ -0.15
SOX3P41225 VPS9D1-201ENST00000389386 2748 ntAPPRIS P2 TSL 1 (best) BASIC14.12□□□□□ -0.15
SOX3P41225 PDPR-202ENST00000398122 2734 ntTSL 2 BASIC14.12□□□□□ -0.15
SOX3P41225 ATP6V0A4-201ENST00000310018 3135 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
SOX3P41225 NOP14-203ENST00000416614 3538 ntAPPRIS P3 TSL 1 (best) BASIC14.12□□□□□ -0.15
SOX3P41225 AFF3-203ENST00000409579 4342 ntAPPRIS P3 TSL 5 BASIC14.12□□□□□ -0.15
SOX3P41225 STUM-202ENST00000366789 4093 ntAPPRIS ALT1 TSL 5 BASIC14.12□□□□□ -0.15
SOX3P41225 OBSL1-202ENST00000373873 3297 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
SOX3P41225 TOR2A-202ENST00000373281 2477 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
SOX3P41225 SNUPN-206ENST00000564675 1682 ntAPPRIS P1 TSL 5 BASIC14.12□□□□□ -0.15
SOX3P41225 CXorf40A-201ENST00000359293 974 ntAPPRIS P3 TSL 2 BASIC14.12□□□□□ -0.15
SOX3P41225 BEX2-202ENST00000372677 899 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
SOX3P41225 BLVRA-202ENST00000402924 1161 ntAPPRIS P1 TSL 2 BASIC14.12□□□□□ -0.15
SOX3P41225 NGDN-202ENST00000408901 1143 ntAPPRIS ALT2 TSL 1 (best) BASIC14.12□□□□□ -0.15
SOX3P41225 KLF2P2-201ENST00000416807 1039 ntBASIC14.12□□□□□ -0.15
SOX3P41225 KIF9-205ENST00000432493 633 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
SOX3P41225 RAB34-210ENST00000436730 863 ntAPPRIS P1 TSL 3 BASIC14.12□□□□□ -0.15
SOX3P41225 AP000552.1-208ENST00000452952 576 ntTSL 4 BASIC14.12□□□□□ -0.15
SOX3P41225 AP000345.1-201ENST00000454863 569 ntTSL 4 BASIC14.12□□□□□ -0.15
SOX3P41225 AC004522.2-201ENST00000456499 680 ntTSL 3 BASIC14.12□□□□□ -0.15
SOX3P41225 XXYLT1-AS1-201ENST00000458531 431 ntTSL 3 BASIC14.12□□□□□ -0.15
SOX3P41225 TMEM14B-204ENST00000461342 559 ntTSL 2 BASIC14.12□□□□□ -0.15
SOX3P41225 FTH1P14-201ENST00000482930 551 ntBASIC14.12□□□□□ -0.15
SOX3P41225 AC115284.1-201ENST00000488257 547 ntTSL 4 BASIC14.12□□□□□ -0.15
SOX3P41225 AC012640.1-201ENST00000509915 688 ntTSL 3 BASIC14.12□□□□□ -0.15
SOX3P41225 AC018653.3-202ENST00000538062 735 ntTSL 3 BASIC14.12□□□□□ -0.15
SOX3P41225 AL118558.1-202ENST00000557242 451 ntTSL 3 BASIC14.12□□□□□ -0.15
SOX3P41225 AC012615.4-201ENST00000586694 607 ntTSL 4 BASIC14.12□□□□□ -0.15
SOX3P41225 AC068473.4-201ENST00000587527 585 ntTSL 4 BASIC14.12□□□□□ -0.15
SOX3P41225 SCGB1C2-201ENST00000595228 478 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
SOX3P41225 H2BFM-203ENST00000598335 465 ntAPPRIS P1 TSL 5 BASIC14.12□□□□□ -0.15
SOX3P41225 MIR6775-201ENST00000617557 69 ntBASIC14.12□□□□□ -0.15
SOX3P41225 WNT11-204ENST00000621122 789 ntTSL 5 BASIC14.12□□□□□ -0.15
SOX3P41225 AC092506.1-204ENST00000634888 1066 ntTSL 5 BASIC14.12□□□□□ -0.15
SOX3P41225 AC233723.1-201ENST00000635921 386 ntAPPRIS P1 TSL 5 BASIC14.12□□□□□ -0.15
SOX3P41225 TNIP1-214ENST00000522226 2238 ntAPPRIS P3 TSL 2 BASIC14.12□□□□□ -0.15
SOX3P41225 C1R-201ENST00000535233 2211 ntTSL 2 BASIC14.12□□□□□ -0.15
SOX3P41225 FOXRED1-213ENST00000532125 1825 ntAPPRIS ALT2 TSL 2 BASIC14.12□□□□□ -0.15
SOX3P41225 APBB1IP-202ENST00000376236 2771 ntAPPRIS P1 TSL 5 BASIC14.12□□□□□ -0.15
SOX3P41225 UBE3B-201ENST00000340074 1448 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
SOX3P41225 PTPN9-201ENST00000306726 3862 ntAPPRIS ALT2 TSL 5 BASIC14.12□□□□□ -0.15
SOX3P41225 LSM6-201ENST00000296581 2259 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
SOX3P41225 HAUS2-208ENST00000568876 1702 ntTSL 4 BASIC14.12□□□□□ -0.15
SOX3P41225 FUK-201ENST00000288078 4081 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
SOX3P41225 PIDD1-201ENST00000347755 2998 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
SOX3P41225 KIF26B-202ENST00000407071 7287 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
SOX3P41225 NR3C1-209ENST00000503201 2594 ntAPPRIS P3 TSL 1 (best) BASIC14.12□□□□□ -0.15
SOX3P41225 RNASE1-202ENST00000397967 1348 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
SOX3P41225 KRT8P35-201ENST00000483942 1338 ntBASIC14.12□□□□□ -0.15
SOX3P41225 LARGE1-201ENST00000354992 4409 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
SOX3P41225 AC148477.2-201ENST00000537762 3039 ntTSL 3 BASIC14.12□□□□□ -0.15
SOX3P41225 TIE1-201ENST00000372476 3882 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
SOX3P41225 ALG9-201ENST00000398006 2345 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
SOX3P41225 INO80-201ENST00000361937 6439 ntAPPRIS P1 TSL 5 BASIC14.12□□□□□ -0.15
SOX3P41225 CASP2-207ENST00000619992 4006 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
SOX3P41225 TMEM169-204ENST00000437356 1634 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
SOX3P41225 TRIM62-204ENST00000543586 1638 ntTSL 2 BASIC14.12□□□□□ -0.15
SOX3P41225 ANXA6-215ENST00000523714 2451 ntTSL 2 BASIC14.12□□□□□ -0.15
SOX3P41225 USP37-202ENST00000338465 1771 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
SOX3P41225 IMPACT-201ENST00000284202 3792 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
SOX3P41225 SV2A-201ENST00000369145 2903 ntTSL 2 BASIC14.11□□□□□ -0.15
SOX3P41225 FRMD5-201ENST00000402883 4091 ntTSL 5 BASIC14.11□□□□□ -0.15
SOX3P41225 LINC00691-201ENST00000432505 2232 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
SOX3P41225 PUS7-202ENST00000469408 2356 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
SOX3P41225 THUMPD3-210ENST00000515662 2390 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
SOX3P41225 CXorf36-201ENST00000377934 2513 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
SOX3P41225 PPP2R1B-203ENST00000393055 1525 ntTSL 2 BASIC14.11□□□□□ -0.15
SOX3P41225 CYB561D2-202ENST00000418577 1533 ntAPPRIS P1 TSL 2 BASIC14.11□□□□□ -0.15
SOX3P41225 ELFN2-201ENST00000402918 8361 ntAPPRIS P1 TSL 4 BASIC14.11□□□□□ -0.15
SOX3P41225 ADRB2-201ENST00000305988 3443 ntAPPRIS P1 BASIC14.11□□□□□ -0.15
SOX3P41225 MAEL-201ENST00000367870 1831 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
SOX3P41225 KCNT1-209ENST00000490355 3708 ntAPPRIS ALT2 TSL 5 BASIC14.11□□□□□ -0.15
SOX3P41225 CEACAM19-202ENST00000403660 1982 ntAPPRIS P3 TSL 1 (best) BASIC14.11□□□□□ -0.15
SOX3P41225 ANKRD18A-201ENST00000399703 4041 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
SOX3P41225 SLC4A7-212ENST00000446700 4000 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
SOX3P41225 RNPS1-216ENST00000565678 2298 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
SOX3P41225 SAFB-201ENST00000292123 3042 ntAPPRIS P3 TSL 1 (best) BASIC14.11□□□□□ -0.15
SOX3P41225 ELN-208ENST00000380575 3043 ntAPPRIS ALT2 TSL 1 (best) BASIC14.11□□□□□ -0.15
SOX3P41225 BEND6-203ENST00000370748 3497 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
SOX3P41225 LRIG3-201ENST00000320743 4070 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
SOX3P41225 AHNAK-201ENST00000257247 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC14.11□□□□□ -0.15
SOX3P41225 RPL39L-201ENST00000296277 756 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
SOX3P41225 ANKRD19P-201ENST00000338192 862 ntBASIC14.11□□□□□ -0.15
SOX3P41225 SEPT6-204ENST00000360156 2609 ntAPPRIS ALT1 TSL 1 (best) BASIC14.11□□□□□ -0.15
SOX3P41225 NUS1P3-201ENST00000423502 862 ntBASIC14.11□□□□□ -0.15
SOX3P41225 RPS24-203ENST00000435275 656 ntAPPRIS ALT1 TSL 2 BASIC14.11□□□□□ -0.15
SOX3P41225 RBM26-203ENST00000438737 4132 ntTSL 5 BASIC14.11□□□□□ -0.15
Retrieved 100 of 98,524 protein–RNA pairs in 35.6 ms