Protein–RNA interactions for Protein: P29400

COL4A5, Collagen alpha-5(IV) chain, humanhuman

Predictions only

Length 1,685 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A5P29400 TAF9-202ENST00000328663 1461 ntAPPRIS P2 TSL 2 BASIC17.34■□□□□ 0.37
COL4A5P29400 EFHD1-207ENST00000611312 1490 ntTSL 5 BASIC17.34■□□□□ 0.37
COL4A5P29400 KIRREL1-202ENST00000360089 3304 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
COL4A5P29400 HMOX2-204ENST00000414777 1752 ntAPPRIS P1 TSL 5 BASIC17.34■□□□□ 0.37
COL4A5P29400 NRXN2-202ENST00000301894 3535 ntTSL 5 BASIC17.34■□□□□ 0.37
COL4A5P29400 ODF2-202ENST00000372791 2375 ntAPPRIS P3 TSL 1 (best) BASIC17.34■□□□□ 0.37
COL4A5P29400 CD3EAP-202ENST00000589804 1830 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
COL4A5P29400 LCK-202ENST00000336890 2117 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
COL4A5P29400 BRF1-201ENST00000327359 2292 ntTSL 2 BASIC17.34■□□□□ 0.37
COL4A5P29400 HLA-DRB5-201ENST00000374975 1260 ntAPPRIS P1 BASIC17.34■□□□□ 0.37
COL4A5P29400 VPS16-203ENST00000380469 2318 ntTSL 2 BASIC17.34■□□□□ 0.37
COL4A5P29400 BAX-205ENST00000391871 687 ntTSL 5 BASIC17.34■□□□□ 0.37
COL4A5P29400 AIFM3-203ENST00000405089 2333 ntAPPRIS ALT1 TSL 2 BASIC17.34■□□□□ 0.37
COL4A5P29400 RPL3P2-204ENST00000413027 1203 ntBASIC17.34■□□□□ 0.37
COL4A5P29400 AC012506.1-201ENST00000423706 525 ntTSL 4 BASIC17.34■□□□□ 0.37
COL4A5P29400 GRAMD1A-203ENST00000424536 808 ntTSL 2 BASIC17.34■□□□□ 0.37
COL4A5P29400 AL592301.1-201ENST00000439501 864 ntTSL 3 BASIC17.34■□□□□ 0.37
COL4A5P29400 CTSS-202ENST00000448301 1421 ntTSL 2 BASIC17.34■□□□□ 0.37
COL4A5P29400 AC010255.3-203ENST00000509403 1727 ntAPPRIS P1 TSL 2 BASIC17.34■□□□□ 0.37
COL4A5P29400 ATP2C1-224ENST00000533801 3690 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
COL4A5P29400 C11orf97-201ENST00000542198 701 ntAPPRIS P1 TSL 5 BASIC17.34■□□□□ 0.37
COL4A5P29400 AC010186.1-201ENST00000546259 532 ntTSL 2 BASIC17.34■□□□□ 0.37
COL4A5P29400 NAA38-205ENST00000575771 852 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
COL4A5P29400 AP005212.2-201ENST00000584979 510 ntBASIC17.34■□□□□ 0.37
COL4A5P29400 C19orf70-203ENST00000587589 577 ntTSL 5 BASIC17.34■□□□□ 0.37
COL4A5P29400 RIMBP3-201ENST00000619918 6105 ntAPPRIS P1 BASIC17.34■□□□□ 0.37
COL4A5P29400 GAL3ST4-201ENST00000360039 2537 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
COL4A5P29400 SYNGR2-207ENST00000590201 2239 ntTSL 5 BASIC17.34■□□□□ 0.37
COL4A5P29400 RNF167-201ENST00000262482 1915 ntAPPRIS P3 TSL 2 BASIC17.34■□□□□ 0.37
COL4A5P29400 OXA1L-202ENST00000358043 1750 ntTSL 2 BASIC17.34■□□□□ 0.37
COL4A5P29400 FBXL7-203ENST00000510662 1758 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
COL4A5P29400 FNDC5-201ENST00000373471 2732 ntAPPRIS ALT2 TSL 2 BASIC17.34■□□□□ 0.37
COL4A5P29400 SLC50A1-203ENST00000368404 1300 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
COL4A5P29400 TLL1-206ENST00000513213 1829 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
COL4A5P29400 AXIN1-201ENST00000262320 3643 ntAPPRIS P4 TSL 1 (best) BASIC17.34■□□□□ 0.37
COL4A5P29400 POLR3K-201ENST00000293860 1392 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
COL4A5P29400 AL109809.1-201ENST00000418979 1367 ntBASIC17.34■□□□□ 0.37
COL4A5P29400 LRRC56-201ENST00000270115 2769 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
COL4A5P29400 AEN-201ENST00000332810 3117 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
COL4A5P29400 ABI3-201ENST00000225941 2109 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
COL4A5P29400 SAT1-201ENST00000379251 801 ntTSL 2 BASIC17.33■□□□□ 0.37
COL4A5P29400 SAT1-202ENST00000379253 909 ntTSL 2 BASIC17.33■□□□□ 0.37
COL4A5P29400 SAT1-203ENST00000379254 868 ntTSL 3 BASIC17.33■□□□□ 0.37
COL4A5P29400 SAT1-204ENST00000379270 1065 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
COL4A5P29400 GEMIN8P4-201ENST00000380526 729 ntBASIC17.33■□□□□ 0.37
COL4A5P29400 RANGRF-202ENST00000407006 1074 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
COL4A5P29400 ID2-AS1-201ENST00000412712 953 ntTSL 5 BASIC17.33■□□□□ 0.37
COL4A5P29400 OR52M2P-201ENST00000414298 959 ntBASIC17.33■□□□□ 0.37
COL4A5P29400 NAA60-205ENST00000424546 1149 ntTSL 2 BASIC17.33■□□□□ 0.37
COL4A5P29400 HLA-DPA2-205ENST00000433582 733 ntBASIC17.33■□□□□ 0.37
COL4A5P29400 RN7SL788P-201ENST00000460504 316 ntBASIC17.33■□□□□ 0.37
COL4A5P29400 AL132801.1-201ENST00000559675 567 ntTSL 4 BASIC17.33■□□□□ 0.37
COL4A5P29400 PPCDC-206ENST00000564923 757 ntTSL 5 BASIC17.33■□□□□ 0.37
COL4A5P29400 AC009975.2-202ENST00000634539 854 ntTSL 5 BASIC17.33■□□□□ 0.37
COL4A5P29400 PHF10-205ENST00000612128 4395 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
COL4A5P29400 ADAMTSL1-207ENST00000380566 2321 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
COL4A5P29400 MAFB-201ENST00000373313 3393 ntAPPRIS P1 BASIC17.33■□□□□ 0.37
COL4A5P29400 ATAT1-206ENST00000376485 1476 ntAPPRIS ALT1 TSL 5 BASIC17.33■□□□□ 0.36
COL4A5P29400 AC004554.1-201ENST00000422830 1468 ntBASIC17.33■□□□□ 0.36
COL4A5P29400 MBD1-209ENST00000398495 2178 ntTSL 5 BASIC17.33■□□□□ 0.36
COL4A5P29400 EIF4H-202ENST00000353999 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC17.33■□□□□ 0.36
COL4A5P29400 NIT1-204ENST00000392190 1518 ntAPPRIS ALT1 TSL 3 BASIC17.33■□□□□ 0.36
COL4A5P29400 KYAT1-201ENST00000302586 1903 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
COL4A5P29400 PGR-210ENST00000619228 3038 ntTSL 5 BASIC17.33■□□□□ 0.36
COL4A5P29400 TRIM3-215ENST00000639856 2137 ntTSL 5 BASIC17.33■□□□□ 0.36
COL4A5P29400 MAGEA12-202ENST00000393869 1761 ntAPPRIS P1 TSL 2 BASIC17.33■□□□□ 0.36
COL4A5P29400 XRCC3-209ENST00000554913 2539 ntAPPRIS P1 TSL 2 BASIC17.33■□□□□ 0.36
COL4A5P29400 NOTO-201ENST00000398468 2749 ntAPPRIS P1 TSL 2 BASIC17.33■□□□□ 0.36
COL4A5P29400 CPSF7-202ENST00000394888 3650 ntAPPRIS P4 TSL 2 BASIC17.33■□□□□ 0.36
COL4A5P29400 CIAPIN1-201ENST00000394391 2182 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
COL4A5P29400 CT55-201ENST00000276241 1445 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.36
COL4A5P29400 SLC22A23-210ENST00000490273 2043 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
COL4A5P29400 DIAPH2-202ENST00000355827 3782 ntAPPRIS ALT2 TSL 5 BASIC17.33■□□□□ 0.36
COL4A5P29400 UBL3-201ENST00000380680 4384 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
COL4A5P29400 CCDC8-201ENST00000307522 3213 ntAPPRIS P1 BASIC17.33■□□□□ 0.36
COL4A5P29400 PGLYRP3-201ENST00000290722 1173 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
COL4A5P29400 UROS-201ENST00000368774 744 ntTSL 2 BASIC17.32■□□□□ 0.36
COL4A5P29400 RNF144A-AS1-203ENST00000426122 579 ntTSL 4 BASIC17.32■□□□□ 0.36
COL4A5P29400 KCNK16-204ENST00000437525 981 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
COL4A5P29400 LINC01056-201ENST00000455711 1234 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
COL4A5P29400 IGKV1D-43-201ENST00000468879 532 ntAPPRIS P1 BASIC17.32■□□□□ 0.36
COL4A5P29400 AC025186.1-201ENST00000478174 870 ntBASIC17.32■□□□□ 0.36
COL4A5P29400 HINT1-205ENST00000508488 703 ntTSL 2 BASIC17.32■□□□□ 0.36
COL4A5P29400 AC005740.1-201ENST00000515639 522 ntBASIC17.32■□□□□ 0.36
COL4A5P29400 AC023968.2-201ENST00000560593 1049 ntBASIC17.32■□□□□ 0.36
COL4A5P29400 AC091769.1-201ENST00000619576 568 ntBASIC17.32■□□□□ 0.36
COL4A5P29400 RARS-210ENST00000626454 177 ntTSL 5 BASIC17.32■□□□□ 0.36
COL4A5P29400 NEK2-201ENST00000366998 1865 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
COL4A5P29400 DOC2GP-204ENST00000639052 2548 ntBASIC17.32■□□□□ 0.36
COL4A5P29400 MC5R-201ENST00000324750 1319 ntAPPRIS P1 BASIC17.32■□□□□ 0.36
COL4A5P29400 BIN3-202ENST00000399977 1340 ntTSL 2 BASIC17.32■□□□□ 0.36
COL4A5P29400 ENPP7P8-202ENST00000527856 1345 ntBASIC17.32■□□□□ 0.36
COL4A5P29400 CHRNA1-204ENST00000409323 1585 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
COL4A5P29400 PLPPR5-201ENST00000263177 3288 ntAPPRIS P4 TSL 1 (best) BASIC17.32■□□□□ 0.36
COL4A5P29400 RPF1-201ENST00000370654 1385 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
COL4A5P29400 ASGR1-209ENST00000619926 1384 ntTSL 5 BASIC17.32■□□□□ 0.36
COL4A5P29400 TRIM46-211ENST00000611379 3082 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
COL4A5P29400 LONRF3-203ENST00000422289 2898 ntTSL 2 BASIC17.32■□□□□ 0.36
COL4A5P29400 C1orf228-218ENST00000458657 1818 ntAPPRIS P2 TSL 5 BASIC17.32■□□□□ 0.36
COL4A5P29400 ELOVL7-205ENST00000508821 3994 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 31.1 ms