Protein–RNA interactions for Protein: P17096

HMGA1, High mobility group protein HMG-I/HMG-Y, humanhuman

Known RBP Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1P17096 CRAT-201ENST00000318080 2763 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
HMGA1P17096 ZFAND5-205ENST00000376962 2785 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
HMGA1P17096 MFSD13A-201ENST00000238936 2852 ntAPPRIS P1 TSL 5 BASIC15.3■□□□□ 0.04
HMGA1P17096 STBD1-201ENST00000237642 3420 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
HMGA1P17096 PDZD4-202ENST00000393758 3763 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
HMGA1P17096 AKAP1-202ENST00000337714 3970 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
HMGA1P17096 COLEC11-201ENST00000236693 1381 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
HMGA1P17096 PCNP-201ENST00000265260 2342 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
HMGA1P17096 ELMOD1-201ENST00000265840 2852 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
HMGA1P17096 PPFIBP2-201ENST00000299492 3557 ntAPPRIS P3 TSL 1 (best) BASIC15.3■□□□□ 0.04
HMGA1P17096 KRTAP19-5-201ENST00000334151 461 ntAPPRIS P1 BASIC15.3■□□□□ 0.04
HMGA1P17096 HM13-201ENST00000335574 1809 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
HMGA1P17096 FAM160B1-203ENST00000369250 2870 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
HMGA1P17096 MAGEA2B-202ENST00000370293 1714 ntAPPRIS P1 TSL 2 BASIC15.3■□□□□ 0.04
HMGA1P17096 PTBP1-204ENST00000394601 3185 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
HMGA1P17096 SLC39A8-202ENST00000394833 3238 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
HMGA1P17096 AC073316.1-202ENST00000402115 988 ntTSL 5 BASIC15.3■□□□□ 0.04
HMGA1P17096 CCDC51-202ENST00000412398 1385 ntTSL 2 BASIC15.3■□□□□ 0.04
HMGA1P17096 AC069277.1-202ENST00000414438 761 ntTSL 3 BASIC15.3■□□□□ 0.04
HMGA1P17096 CLUH-201ENST00000435359 5224 ntAPPRIS P2 TSL 5 BASIC15.3■□□□□ 0.04
HMGA1P17096 AC234782.1-201ENST00000451950 919 ntBASIC15.3■□□□□ 0.04
HMGA1P17096 CEP164P1-201ENST00000455142 418 ntBASIC15.3■□□□□ 0.04
HMGA1P17096 PSORS1C1-206ENST00000547221 655 ntAPPRIS ALT2 TSL 3 BASIC15.3■□□□□ 0.04
HMGA1P17096 COG4-212ENST00000564653 590 ntTSL 5 BASIC15.3■□□□□ 0.04
HMGA1P17096 NAT9-211ENST00000580632 799 ntTSL 3 BASIC15.3■□□□□ 0.04
HMGA1P17096 SNRPD2-206ENST00000588301 702 ntAPPRIS P1 TSL 3 BASIC15.3■□□□□ 0.04
HMGA1P17096 IRF3-215ENST00000596822 823 ntTSL 3 BASIC15.3■□□□□ 0.04
HMGA1P17096 NEAT1-203ENST00000601801 487 ntTSL 4 BASIC15.3■□□□□ 0.04
HMGA1P17096 TTC28-AS1_3.1-201ENST00000615579 181 ntBASIC15.3■□□□□ 0.04
HMGA1P17096 HIST1H4A-201ENST00000617569 312 ntAPPRIS P1 BASIC15.3■□□□□ 0.04
HMGA1P17096 AC006453.1-201ENST00000636037 1257 ntBASIC15.3■□□□□ 0.04
HMGA1P17096 PTBP1-202ENST00000350092 3069 ntAPPRIS ALT1 TSL 1 (best) BASIC15.3■□□□□ 0.04
HMGA1P17096 ARNT2-209ENST00000622346 2932 ntTSL 2 BASIC15.3■□□□□ 0.04
HMGA1P17096 VOPP1-207ENST00000428648 2866 ntTSL 2 BASIC15.3■□□□□ 0.04
HMGA1P17096 PNMA1-201ENST00000316836 2590 ntAPPRIS P1 BASIC15.3■□□□□ 0.04
HMGA1P17096 HOGA1-202ENST00000370646 2488 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
HMGA1P17096 GGT6-204ENST00000574154 2482 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
HMGA1P17096 TMEM209-202ENST00000462753 2322 ntAPPRIS ALT1 TSL 5 BASIC15.29■□□□□ 0.04
HMGA1P17096 BACE1-211ENST00000528053 4083 ntTSL 5 BASIC15.29■□□□□ 0.04
HMGA1P17096 AGPAT1-201ENST00000336984 2021 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
HMGA1P17096 MAGEA2-203ENST00000611557 2024 ntAPPRIS P1 TSL 5 BASIC15.29■□□□□ 0.04
HMGA1P17096 AC011455.3-201ENST00000599996 1967 ntAPPRIS P1 TSL 2 BASIC15.29■□□□□ 0.04
HMGA1P17096 CXCL12-201ENST00000343575 1857 ntAPPRIS P3 TSL 1 (best) BASIC15.29■□□□□ 0.04
HMGA1P17096 CACNA2D3-201ENST00000288197 3671 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
HMGA1P17096 CACNA2D3-206ENST00000474759 3675 ntAPPRIS P2 TSL 1 (best) BASIC15.29■□□□□ 0.04
HMGA1P17096 PDYN-AS1-201ENST00000446562 1802 ntTSL 2 BASIC15.29■□□□□ 0.04
HMGA1P17096 STK26-204ENST00000481105 1835 ntTSL 2 BASIC15.29■□□□□ 0.04
HMGA1P17096 MGME1-201ENST00000377704 1781 ntTSL 3 BASIC15.29■□□□□ 0.04
HMGA1P17096 AC015688.4-201ENST00000580780 1647 ntBASIC15.29■□□□□ 0.04
HMGA1P17096 PLXNB3-201ENST00000361971 6146 ntAPPRIS P3 TSL 1 (best) BASIC15.29■□□□□ 0.04
HMGA1P17096 KCNMA1-251ENST00000639090 4319 ntAPPRIS ALT2 TSL 5 BASIC15.29■□□□□ 0.04
HMGA1P17096 AC005885.1-204ENST00000637885 2885 ntAPPRIS P1 TSL 5 BASIC15.29■□□□□ 0.04
HMGA1P17096 TOB1-AS1-201ENST00000416263 1351 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
HMGA1P17096 DLK1-201ENST00000331224 1324 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
HMGA1P17096 ESD-202ENST00000378720 1192 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
HMGA1P17096 CAMKMT-203ENST00000403853 1114 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
HMGA1P17096 AL391832.2-201ENST00000418557 889 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
HMGA1P17096 Z82214.1-201ENST00000419643 988 ntTSL 3 BASIC15.29■□□□□ 0.04
HMGA1P17096 AL451042.2-201ENST00000424774 904 ntTSL 2 BASIC15.29■□□□□ 0.04
HMGA1P17096 AL590617.2-201ENST00000432673 917 ntTSL 3 BASIC15.29■□□□□ 0.04
HMGA1P17096 HLA-DPB2-205ENST00000435074 1188 ntBASIC15.29■□□□□ 0.04
HMGA1P17096 OR2R1P-201ENST00000441404 914 ntBASIC15.29■□□□□ 0.04
HMGA1P17096 FKBP11-202ENST00000444214 630 ntTSL 2 BASIC15.29■□□□□ 0.04
HMGA1P17096 EEF1DP6-201ENST00000449232 372 ntBASIC15.29■□□□□ 0.04
HMGA1P17096 Z84485.1-202ENST00000499560 1230 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
HMGA1P17096 POU5F1P2-201ENST00000521750 823 ntBASIC15.29■□□□□ 0.04
HMGA1P17096 IGHVIII-5-2-201ENST00000522505 261 ntBASIC15.29■□□□□ 0.04
HMGA1P17096 AL356756.1-201ENST00000550941 551 ntTSL 3 BASIC15.29■□□□□ 0.04
HMGA1P17096 AC011466.3-201ENST00000596563 852 ntTSL 2 BASIC15.29■□□□□ 0.04
HMGA1P17096 AC012044.1-201ENST00000603431 297 ntBASIC15.29■□□□□ 0.04
HMGA1P17096 ADH5-213ENST00000626055 1299 ntTSL 5 BASIC15.29■□□□□ 0.04
HMGA1P17096 TMEM263-201ENST00000280756 3362 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
HMGA1P17096 CACNA1A-215ENST00000635727 7536 ntAPPRIS ALT2 TSL 5 BASIC15.29■□□□□ 0.04
HMGA1P17096 AC104640.1-201ENST00000562617 2109 ntBASIC15.29■□□□□ 0.04
HMGA1P17096 PPP3CA-207ENST00000512215 4007 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
HMGA1P17096 FXYD6-201ENST00000260282 1929 ntAPPRIS P2 TSL 1 (best) BASIC15.29■□□□□ 0.04
HMGA1P17096 AC026992.2-202ENST00000565312 1934 ntTSL 5 BASIC15.29■□□□□ 0.04
HMGA1P17096 POLR1E-202ENST00000377798 1868 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
HMGA1P17096 DUS2-202ENST00000432752 1864 ntTSL 2 BASIC15.29■□□□□ 0.04
HMGA1P17096 C3orf33-205ENST00000534941 1804 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
HMGA1P17096 SHTN1-202ENST00000355371 5361 ntAPPRIS ALT1 TSL 2 BASIC15.29■□□□□ 0.04
HMGA1P17096 EPHB4-201ENST00000358173 4329 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
HMGA1P17096 AL358216.1-201ENST00000451601 1657 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
HMGA1P17096 KDM4B-203ENST00000536461 5027 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
HMGA1P17096 LINC01165-201ENST00000445190 1623 ntBASIC15.28■□□□□ 0.04
HMGA1P17096 SMTNL1-202ENST00000527972 1649 ntAPPRIS P2 TSL 5 BASIC15.28■□□□□ 0.04
HMGA1P17096 AC004805.1-201ENST00000577662 1616 ntAPPRIS P1 TSL 2 BASIC15.28■□□□□ 0.04
HMGA1P17096 PACSIN2-201ENST00000263246 3249 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
HMGA1P17096 DAGLB-204ENST00000436575 2385 ntTSL 2 BASIC15.28■□□□□ 0.04
HMGA1P17096 LINC00680-205ENST00000450081 1593 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
HMGA1P17096 CCNY-202ENST00000339497 4630 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
HMGA1P17096 DUSP22-202ENST00000419235 3098 ntAPPRIS P1 TSL 2 BASIC15.28■□□□□ 0.04
HMGA1P17096 SCRIB-202ENST00000356994 5218 ntAPPRIS P4 TSL 2 BASIC15.28■□□□□ 0.04
HMGA1P17096 BSDC1-203ENST00000419121 1473 ntTSL 2 BASIC15.28■□□□□ 0.04
HMGA1P17096 NELFE-201ENST00000375425 1405 ntAPPRIS ALT2 TSL 2 BASIC15.28■□□□□ 0.04
HMGA1P17096 GSTCD-206ENST00000507281 2091 ntTSL 5 BASIC15.28■□□□□ 0.04
HMGA1P17096 TCL1A-203ENST00000554012 1391 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
HMGA1P17096 LINC00334-203ENST00000638500 1377 ntTSL 5 BASIC15.28■□□□□ 0.04
HMGA1P17096 SLC35G3-201ENST00000297307 2004 ntAPPRIS P1 BASIC15.28■□□□□ 0.04
HMGA1P17096 TNFSF13-202ENST00000349228 2036 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 69.3 ms