Protein–RNA interactions for Protein: O75161

NPHP4, Nephrocystin-4, humanhuman

Predicted RBP Predictions only

Length 1,426 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4O75161 CES1P2-201ENST00000566467 1242 ntBASIC20.35■□□□□ 0.85
NPHP4O75161 AC005274.1-201ENST00000623460 802 ntBASIC20.35■□□□□ 0.85
NPHP4O75161 STOX1-204ENST00000399169 3281 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
NPHP4O75161 LINC01101-201ENST00000622953 1884 ntBASIC20.35■□□□□ 0.85
NPHP4O75161 DNAJC2-203ENST00000379263 2167 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
NPHP4O75161 TLNRD1-201ENST00000267984 4845 ntAPPRIS P1 BASIC20.35■□□□□ 0.85
NPHP4O75161 SGK2-206ENST00000423407 1915 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
NPHP4O75161 MYCBPAP-203ENST00000436259 3102 ntAPPRIS ALT2 TSL 5 BASIC20.34■□□□□ 0.85
NPHP4O75161 ING1-203ENST00000375774 2870 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
NPHP4O75161 PRPF31-203ENST00000419967 2269 ntTSL 5 BASIC20.34■□□□□ 0.85
NPHP4O75161 NECTIN1-203ENST00000341398 1377 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
NPHP4O75161 SUCLA2-205ENST00000470760 1445 ntTSL 2 BASIC20.34■□□□□ 0.85
NPHP4O75161 ZXDB-201ENST00000374888 5894 ntAPPRIS P1 BASIC20.34■□□□□ 0.85
NPHP4O75161 ZMYND12-201ENST00000372565 1775 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
NPHP4O75161 GORAB-202ENST00000367763 2189 ntAPPRIS P1 TSL 2 BASIC20.34■□□□□ 0.85
NPHP4O75161 NAP1L1-202ENST00000393263 1896 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
NPHP4O75161 TAPBP-233ENST00000426633 1888 ntAPPRIS P4 TSL 1 (best) BASIC20.34■□□□□ 0.85
NPHP4O75161 NNMT-203ENST00000535401 1867 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
NPHP4O75161 RAB1A-204ENST00000409892 2254 ntTSL 2 BASIC20.34■□□□□ 0.85
NPHP4O75161 PSMC3-213ENST00000619920 1580 ntAPPRIS P2 TSL 1 (best) BASIC20.34■□□□□ 0.85
NPHP4O75161 RNF212-201ENST00000333673 1019 ntAPPRIS ALT2 TSL 2 BASIC20.34■□□□□ 0.85
NPHP4O75161 NDUFB6-202ENST00000366466 761 ntTSL 2 BASIC20.34■□□□□ 0.85
NPHP4O75161 FOLR1-202ENST00000393676 996 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
NPHP4O75161 GSS-202ENST00000451957 1092 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
NPHP4O75161 SKA2-205ENST00000580541 689 ntTSL 3 BASIC20.34■□□□□ 0.85
NPHP4O75161 MIR4254-201ENST00000581063 76 ntBASIC20.34■□□□□ 0.85
NPHP4O75161 FAAP24-203ENST00000589646 836 ntTSL 3 BASIC20.34■□□□□ 0.85
NPHP4O75161 RABL2B-202ENST00000395590 2380 ntTSL 2 BASIC20.34■□□□□ 0.85
NPHP4O75161 PRRT4-201ENST00000446477 3544 ntAPPRIS P1 TSL 5 BASIC20.34■□□□□ 0.85
NPHP4O75161 NIPA1-207ENST00000561183 1675 ntAPPRIS ALT2 TSL 1 (best) BASIC20.34■□□□□ 0.85
NPHP4O75161 PRMT2-216ENST00000621201 1301 ntTSL 5 BASIC20.34■□□□□ 0.85
NPHP4O75161 TMPO-203ENST00000343315 2465 ntTSL 5 BASIC20.34■□□□□ 0.85
NPHP4O75161 NBPF3-205ENST00000454000 2133 ntAPPRIS ALT2 TSL 2 BASIC20.34■□□□□ 0.85
NPHP4O75161 TACC3-212ENST00000612220 1756 ntTSL 5 BASIC20.34■□□□□ 0.85
NPHP4O75161 CIT-219ENST00000612548 1799 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
NPHP4O75161 IQCA1L-203ENST00000615129 2606 ntAPPRIS P1 TSL 5 BASIC20.33■□□□□ 0.85
NPHP4O75161 TGOLN2-205ENST00000409232 2235 ntAPPRIS ALT2 TSL 1 (best) BASIC20.33■□□□□ 0.85
NPHP4O75161 APBB3-202ENST00000356738 1804 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
NPHP4O75161 EZR-202ENST00000367075 3096 ntAPPRIS P2 TSL 1 (best) BASIC20.33■□□□□ 0.85
NPHP4O75161 NIPAL2-202ENST00000430223 4496 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
NPHP4O75161 CNTRL-208ENST00000373865 1917 ntTSL 5 BASIC20.33■□□□□ 0.85
NPHP4O75161 MGEA5-201ENST00000357797 3263 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
NPHP4O75161 ARL6IP1-201ENST00000304414 2409 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
NPHP4O75161 TPBG-203ENST00000543496 2881 ntAPPRIS P1 TSL 2 BASIC20.33■□□□□ 0.85
NPHP4O75161 RAP1GDS1-203ENST00000380158 2085 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
NPHP4O75161 AC022080.1-201ENST00000366255 781 ntBASIC20.33■□□□□ 0.84
NPHP4O75161 NQO2-204ENST00000380454 851 ntTSL 2 BASIC20.33■□□□□ 0.84
NPHP4O75161 PPP1R7-205ENST00000404405 1009 ntTSL 3 BASIC20.33■□□□□ 0.84
NPHP4O75161 TXNL4B-203ENST00000426362 965 ntAPPRIS P1 TSL 2 BASIC20.33■□□□□ 0.84
NPHP4O75161 AC092903.1-201ENST00000466506 262 ntBASIC20.33■□□□□ 0.84
NPHP4O75161 BLOC1S5-205ENST00000543936 368 ntTSL 2 BASIC20.33■□□□□ 0.84
NPHP4O75161 TRAPPC2L-212ENST00000567312 499 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
NPHP4O75161 AC139713.2-207ENST00000641556 1292 ntBASIC20.33■□□□□ 0.84
NPHP4O75161 QKI-201ENST00000275262 6964 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
NPHP4O75161 LRRC59-201ENST00000225972 2910 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
NPHP4O75161 LINC02076-201ENST00000577684 1871 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
NPHP4O75161 ANKMY1-202ENST00000361678 2499 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
NPHP4O75161 AKR1B1-201ENST00000285930 1409 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
NPHP4O75161 CHFR-203ENST00000432561 2648 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
NPHP4O75161 RASSF8-AS1-202ENST00000500276 2610 ntTSL 2 BASIC20.33■□□□□ 0.84
NPHP4O75161 MAD2L1BP-202ENST00000451025 1517 ntTSL 2 BASIC20.32■□□□□ 0.84
NPHP4O75161 HASPIN-201ENST00000325418 2797 ntAPPRIS P1 BASIC20.32■□□□□ 0.84
NPHP4O75161 LINC00528-201ENST00000600723 2160 ntBASIC20.32■□□□□ 0.84
NPHP4O75161 CLCN2-205ENST00000457512 2820 ntAPPRIS ALT2 TSL 2 BASIC20.32■□□□□ 0.84
NPHP4O75161 LDB3-204ENST00000372066 1598 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
NPHP4O75161 CST9-201ENST00000376971 1592 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
NPHP4O75161 PLCH2-203ENST00000378486 4837 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
NPHP4O75161 PLCH2-204ENST00000419816 4837 ntAPPRIS P1 TSL 5 BASIC20.32■□□□□ 0.84
NPHP4O75161 KIAA1586-201ENST00000370733 2933 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
NPHP4O75161 FRMD5-209ENST00000484674 2319 ntTSL 2 BASIC20.32■□□□□ 0.84
NPHP4O75161 RNF187-201ENST00000305943 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC20.32■□□□□ 0.84
NPHP4O75161 AC025165.1-201ENST00000356672 2355 ntTSL 5 BASIC20.32■□□□□ 0.84
NPHP4O75161 RAB3IP-204ENST00000378815 2386 ntTSL 2 BASIC20.32■□□□□ 0.84
NPHP4O75161 ARID5A-203ENST00000454558 3079 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
NPHP4O75161 SRPX-205ENST00000538295 1780 ntAPPRIS ALT2 TSL 2 BASIC20.32■□□□□ 0.84
NPHP4O75161 ZNF821-203ENST00000446827 1822 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
NPHP4O75161 CXCL12-201ENST00000343575 1857 ntAPPRIS P3 TSL 1 (best) BASIC20.32■□□□□ 0.84
NPHP4O75161 MAP4K1-201ENST00000396857 2653 ntAPPRIS P1 TSL 5 BASIC20.32■□□□□ 0.84
NPHP4O75161 CHEK2-204ENST00000382580 1971 ntAPPRIS ALT2 TSL 1 (best) BASIC20.32■□□□□ 0.84
NPHP4O75161 VCAN-204ENST00000502527 2087 ntAPPRIS ALT1 TSL 1 (best) BASIC20.32■□□□□ 0.84
NPHP4O75161 TNNT2-207ENST00000367322 1132 ntAPPRIS ALT2 TSL 1 (best) BASIC20.32■□□□□ 0.84
NPHP4O75161 PLSCR1-202ENST00000448787 996 ntAPPRIS ALT2 TSL 2 BASIC20.32■□□□□ 0.84
NPHP4O75161 AC104590.1-201ENST00000560813 648 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
NPHP4O75161 ARL17B-203ENST00000570618 1140 ntTSL 2 BASIC20.32■□□□□ 0.84
NPHP4O75161 RN7SL602P-201ENST00000578326 324 ntBASIC20.32■□□□□ 0.84
NPHP4O75161 RN7SL718P-201ENST00000581254 303 ntBASIC20.32■□□□□ 0.84
NPHP4O75161 AC011444.1-201ENST00000587836 639 ntTSL 3 BASIC20.32■□□□□ 0.84
NPHP4O75161 AL009176.1-201ENST00000607876 650 ntBASIC20.32■□□□□ 0.84
NPHP4O75161 DUS2-207ENST00000565263 2310 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
NPHP4O75161 KDM5C-203ENST00000375383 5122 ntAPPRIS ALT2 TSL 5 BASIC20.32■□□□□ 0.84
NPHP4O75161 HHEX-202ENST00000472590 1605 ntTSL 2 BASIC20.32■□□□□ 0.84
NPHP4O75161 AC106707.1-201ENST00000475981 1640 ntTSL 2 BASIC20.32■□□□□ 0.84
NPHP4O75161 ABI2-215ENST00000430418 1676 ntTSL 5 BASIC20.32■□□□□ 0.84
NPHP4O75161 LINC01671-201ENST00000419628 1775 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
NPHP4O75161 GABRB2-205ENST00000517901 1779 ntTSL 5 BASIC20.32■□□□□ 0.84
NPHP4O75161 PLCH2-205ENST00000449969 5450 ntTSL 5 BASIC20.32■□□□□ 0.84
NPHP4O75161 CD19-201ENST00000324662 1932 ntAPPRIS P3 TSL 1 (best) BASIC20.31■□□□□ 0.84
NPHP4O75161 SEPHS1-201ENST00000327347 3273 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
NPHP4O75161 SWAP70-202ENST00000447399 3538 ntTSL 2 BASIC20.31■□□□□ 0.84
NPHP4O75161 SUOX-204ENST00000394115 2394 ntAPPRIS P1 TSL 2 BASIC20.31■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 57.9 ms