Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 IL13RA1-202ENST00000371666 4036 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
NKX3-1Q99801 GIPC3-201ENST00000322315 4335 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
NKX3-1Q99801 FAM160A2-202ENST00000449352 3354 ntAPPRIS ALT1 TSL 1 (best) BASIC13.13□□□□□ -0.31
NKX3-1Q99801 CACNA2D4-220ENST00000585732 2566 ntTSL 5 BASIC13.13□□□□□ -0.31
NKX3-1Q99801 PLEKHN1-202ENST00000379409 2455 ntAPPRIS ALT2 TSL 2 BASIC13.13□□□□□ -0.31
NKX3-1Q99801 UBE3A-224ENST00000635914 9352 ntTSL 5 BASIC13.13□□□□□ -0.31
NKX3-1Q99801 SUGP2-215ENST00000601879 5546 ntAPPRIS P3 TSL 2 BASIC13.13□□□□□ -0.31
NKX3-1Q99801 ACAN-209ENST00000617301 8669 ntAPPRIS ALT2 TSL 5 BASIC13.13□□□□□ -0.31
NKX3-1Q99801 MFRP-201ENST00000360167 1663 ntTSL 2 BASIC13.13□□□□□ -0.31
NKX3-1Q99801 NUP54-217ENST00000514987 1563 ntTSL 2 BASIC13.13□□□□□ -0.31
NKX3-1Q99801 RNF150-201ENST00000306799 4535 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
NKX3-1Q99801 CRYM-201ENST00000219599 1471 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
NKX3-1Q99801 CD209-207ENST00000593660 1497 ntAPPRIS ALT2 TSL 1 (best) BASIC13.13□□□□□ -0.31
NKX3-1Q99801 ZFPL1-201ENST00000294258 1371 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
NKX3-1Q99801 WDR45-240ENST00000635003 1376 ntTSL 3 BASIC13.13□□□□□ -0.31
NKX3-1Q99801 CIB3-202ENST00000379859 467 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
NKX3-1Q99801 BAD-202ENST00000394531 631 ntTSL 3 BASIC13.13□□□□□ -0.31
NKX3-1Q99801 C2orf88-205ENST00000443551 692 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
NKX3-1Q99801 COMT-209ENST00000449653 1035 ntAPPRIS ALT2 TSL 1 (best) BASIC13.13□□□□□ -0.31
NKX3-1Q99801 NECAP2-203ENST00000457722 935 ntTSL 2 BASIC13.13□□□□□ -0.31
NKX3-1Q99801 RN7SL618P-201ENST00000477850 296 ntBASIC13.13□□□□□ -0.31
NKX3-1Q99801 AC009720.1-201ENST00000511867 586 ntTSL 2 BASIC13.13□□□□□ -0.31
NKX3-1Q99801 MRNIP-220ENST00000523084 1096 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
NKX3-1Q99801 BAD-207ENST00000544785 525 ntTSL 3 BASIC13.13□□□□□ -0.31
NKX3-1Q99801 CARHSP1-203ENST00000561530 729 ntAPPRIS P1 TSL 3 BASIC13.13□□□□□ -0.31
NKX3-1Q99801 AC138304.1-201ENST00000563841 424 ntTSL 3 BASIC13.13□□□□□ -0.31
NKX3-1Q99801 AC092364.2-202ENST00000597012 1073 ntBASIC13.13□□□□□ -0.31
NKX3-1Q99801 CKMT1A-208ENST00000626814 1073 ntTSL 5 BASIC13.13□□□□□ -0.31
NKX3-1Q99801 SMOC2-202ENST00000356284 3117 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
NKX3-1Q99801 SWAP70-201ENST00000318950 4882 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
NKX3-1Q99801 ZNF251-201ENST00000292562 2807 ntAPPRIS P1 TSL 2 BASIC13.13□□□□□ -0.31
NKX3-1Q99801 CEP70-201ENST00000264982 2732 ntAPPRIS P3 TSL 1 (best) BASIC13.13□□□□□ -0.31
NKX3-1Q99801 TMEM47-201ENST00000275954 4054 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
NKX3-1Q99801 INHBE-201ENST00000266646 2429 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
NKX3-1Q99801 SLC25A21-AS1-201ENST00000556667 1924 ntBASIC13.13□□□□□ -0.31
NKX3-1Q99801 UBXN11-204ENST00000374217 1846 ntAPPRIS ALT2 TSL 2 BASIC13.13□□□□□ -0.31
NKX3-1Q99801 GPER1-203ENST00000397092 2971 ntAPPRIS P1 TSL 2 BASIC13.13□□□□□ -0.31
NKX3-1Q99801 PLTP-201ENST00000354050 1731 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
NKX3-1Q99801 RRAGD-201ENST00000359203 4042 ntTSL 2 BASIC13.13□□□□□ -0.31
NKX3-1Q99801 OGFOD3-201ENST00000313056 4287 ntAPPRIS P1 TSL 2 BASIC13.13□□□□□ -0.31
NKX3-1Q99801 AC002310.1-201ENST00000457283 1445 ntTSL 2 BASIC13.13□□□□□ -0.31
NKX3-1Q99801 SERPINE3-204ENST00000524365 2293 ntAPPRIS P1 TSL 5 BASIC13.13□□□□□ -0.31
NKX3-1Q99801 ZNF362-205ENST00000539719 3106 ntAPPRIS P1 TSL 5 BASIC13.13□□□□□ -0.31
NKX3-1Q99801 PUDP-203ENST00000424830 1334 ntTSL 3 BASIC13.13□□□□□ -0.31
NKX3-1Q99801 MED22-209ENST00000610888 3867 ntAPPRIS ALT1 TSL 1 (best) BASIC13.13□□□□□ -0.31
NKX3-1Q99801 PTGES3-207ENST00000614328 2077 ntTSL 3 BASIC13.12□□□□□ -0.31
NKX3-1Q99801 MSH5-201ENST00000375703 2708 ntAPPRIS ALT2 TSL 1 (best) BASIC13.12□□□□□ -0.31
NKX3-1Q99801 C9orf152-201ENST00000400613 2717 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
NKX3-1Q99801 B3GNT5-202ENST00000460419 3368 ntAPPRIS P1 TSL 2 BASIC13.12□□□□□ -0.31
NKX3-1Q99801 PLXNB3-209ENST00000538966 6377 ntAPPRIS ALT2 TSL 5 BASIC13.12□□□□□ -0.31
NKX3-1Q99801 TPM3-205ENST00000328159 1771 ntTSL 2 BASIC13.12□□□□□ -0.31
NKX3-1Q99801 CES3-201ENST00000303334 3834 ntAPPRIS P3 TSL 1 (best) BASIC13.12□□□□□ -0.31
NKX3-1Q99801 ISY1-203ENST00000393295 3842 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
NKX3-1Q99801 CES3-202ENST00000394037 3817 ntAPPRIS ALT1 TSL 1 (best) BASIC13.12□□□□□ -0.31
NKX3-1Q99801 SLC35C2-201ENST00000243896 2447 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
NKX3-1Q99801 ICA1-207ENST00000406470 2440 ntAPPRIS P3 TSL 1 (best) BASIC13.12□□□□□ -0.31
NKX3-1Q99801 GORASP1-201ENST00000319283 3722 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
NKX3-1Q99801 GEMIN7-201ENST00000270257 1657 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
NKX3-1Q99801 IRAK4-212ENST00000551736 1684 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
NKX3-1Q99801 SPDYE6-201ENST00000563237 1691 ntAPPRIS P1 TSL 5 BASIC13.12□□□□□ -0.31
NKX3-1Q99801 SH3KBP1-205ENST00000397821 4731 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
NKX3-1Q99801 AC051649.2-201ENST00000640310 3319 ntAPPRIS P1 BASIC13.12□□□□□ -0.31
NKX3-1Q99801 GPSM3-207ENST00000375043 1456 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
NKX3-1Q99801 PRRT3-202ENST00000411976 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC13.12□□□□□ -0.31
NKX3-1Q99801 RAB43-202ENST00000393304 4230 ntAPPRIS P1 TSL 4 BASIC13.12□□□□□ -0.31
NKX3-1Q99801 ZNF890P-201ENST00000422060 1352 ntTSL 2 BASIC13.12□□□□□ -0.31
NKX3-1Q99801 SCLT1-204ENST00000503215 1364 ntAPPRIS ALT2 TSL 1 (best) BASIC13.12□□□□□ -0.31
NKX3-1Q99801 TAF8-203ENST00000372982 1805 ntTSL 2 BASIC13.12□□□□□ -0.31
NKX3-1Q99801 C2orf40-201ENST00000238044 789 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
NKX3-1Q99801 TAAR5-201ENST00000258034 1014 ntAPPRIS P1 BASIC13.12□□□□□ -0.31
NKX3-1Q99801 PIP5KL1-201ENST00000300432 1104 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
NKX3-1Q99801 H1FOO-201ENST00000324382 1067 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
NKX3-1Q99801 POLR3GL-202ENST00000369314 1165 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
NKX3-1Q99801 AC104457.1-201ENST00000401024 814 ntBASIC13.12□□□□□ -0.31
NKX3-1Q99801 ZNF789-211ENST00000493485 556 ntTSL 4 BASIC13.12□□□□□ -0.31
NKX3-1Q99801 AP000943.3-201ENST00000536540 954 ntTSL 3 BASIC13.12□□□□□ -0.31
NKX3-1Q99801 AL109827.1-203ENST00000541176 872 ntAPPRIS P5 TSL 2 BASIC13.12□□□□□ -0.31
NKX3-1Q99801 AP006333.1-201ENST00000543817 575 ntTSL 4 BASIC13.12□□□□□ -0.31
NKX3-1Q99801 TAPBPL-205ENST00000544021 772 ntTSL 3 BASIC13.12□□□□□ -0.31
NKX3-1Q99801 SAMD11P1-201ENST00000571429 661 ntBASIC13.12□□□□□ -0.31
NKX3-1Q99801 LITAF-218ENST00000576036 603 ntAPPRIS P1 TSL 4 BASIC13.12□□□□□ -0.31
NKX3-1Q99801 CUEDC1-207ENST00000577840 875 ntTSL 5 BASIC13.12□□□□□ -0.31
NKX3-1Q99801 ZNF667-AS1-204ENST00000588158 921 ntTSL 3 BASIC13.12□□□□□ -0.31
NKX3-1Q99801 GPX4-206ENST00000588919 803 ntTSL 2 BASIC13.12□□□□□ -0.31
NKX3-1Q99801 AC074044.1-201ENST00000609673 707 ntBASIC13.12□□□□□ -0.31
NKX3-1Q99801 GPER1-207ENST00000619052 571 ntTSL 2 BASIC13.12□□□□□ -0.31
NKX3-1Q99801 CLN3-246ENST00000636228 1224 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
NKX3-1Q99801 API5-203ENST00000455725 2257 ntTSL 2 BASIC13.12□□□□□ -0.31
NKX3-1Q99801 TEAD3-202ENST00000402886 2729 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
NKX3-1Q99801 DDX19A-202ENST00000417604 1703 ntTSL 2 BASIC13.12□□□□□ -0.31
NKX3-1Q99801 SLC34A2-203ENST00000504570 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC13.12□□□□□ -0.31
NKX3-1Q99801 PELP1-202ENST00000436683 3524 ntTSL 2 BASIC13.12□□□□□ -0.31
NKX3-1Q99801 PHYHIP-202ENST00000454243 3200 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
NKX3-1Q99801 PRAME-214ENST00000543184 2758 ntAPPRIS P2 TSL 1 (best) BASIC13.12□□□□□ -0.31
NKX3-1Q99801 UMODL1-206ENST00000408989 5262 ntAPPRIS P4 TSL 1 (best) BASIC13.12□□□□□ -0.31
NKX3-1Q99801 PIK3R5-219ENST00000616147 4377 ntTSL 5 BASIC13.12□□□□□ -0.31
NKX3-1Q99801 SP8-203ENST00000617581 3496 ntAPPRIS ALT2 TSL 1 (best) BASIC13.12□□□□□ -0.31
NKX3-1Q99801 PORCN-201ENST00000326194 1755 ntAPPRIS P4 TSL 1 (best) BASIC13.12□□□□□ -0.31
NKX3-1Q99801 TC2N-206ENST00000556018 1770 ntTSL 2 BASIC13.12□□□□□ -0.31
NKX3-1Q99801 NDRG4-217ENST00000562999 2931 ntTSL 5 BASIC13.12□□□□□ -0.31
Retrieved 100 of 98,524 protein–RNA pairs in 74.7 ms