Protein–RNA interactions for Protein: Q96P44

COL21A1, Collagen alpha-1(XXI) chain, humanhuman

Predictions only

Length 957 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL21A1Q96P44 BEND6-203ENST00000370748 3497 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
COL21A1Q96P44 CTSD-211ENST00000637387 1597 ntAPPRIS ALT2 TSL 5 BASIC14.2□□□□□ -0.14
COL21A1Q96P44 PPP1CB-203ENST00000395366 4893 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
COL21A1Q96P44 GHRLOS-201ENST00000439539 1708 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
COL21A1Q96P44 TMEM63C-201ENST00000298351 5334 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
COL21A1Q96P44 TLX1NB-202ENST00000445873 1862 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
COL21A1Q96P44 THBS2-206ENST00000617924 5280 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
COL21A1Q96P44 TAF6-205ENST00000437822 2318 ntTSL 2 BASIC14.2□□□□□ -0.14
COL21A1Q96P44 FAN1-207ENST00000565466 2304 ntTSL 2 BASIC14.2□□□□□ -0.14
COL21A1Q96P44 IL17RD-208ENST00000640796 2345 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
COL21A1Q96P44 KDELC2-201ENST00000323468 4312 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
COL21A1Q96P44 SV2A-201ENST00000369145 2903 ntTSL 2 BASIC14.2□□□□□ -0.14
COL21A1Q96P44 MINDY2-203ENST00000559228 9238 ntAPPRIS P3 TSL 2 BASIC14.2□□□□□ -0.14
COL21A1Q96P44 ARHGAP4-203ENST00000370028 3372 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
COL21A1Q96P44 HNRNPA1P48-201ENST00000562726 1377 ntBASIC14.2□□□□□ -0.14
COL21A1Q96P44 AL138799.1-201ENST00000448213 1675 ntBASIC14.2□□□□□ -0.14
COL21A1Q96P44 SCLT1-209ENST00000511426 1696 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
COL21A1Q96P44 TAF8-203ENST00000372982 1805 ntTSL 2 BASIC14.2□□□□□ -0.14
COL21A1Q96P44 PES1-204ENST00000402284 2144 ntTSL 5 BASIC14.2□□□□□ -0.14
COL21A1Q96P44 LILRP2-201ENST00000413439 2127 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
COL21A1Q96P44 ZNF331-217ENST00000512387 2130 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
COL21A1Q96P44 PDP1-203ENST00000517764 2140 ntAPPRIS P3 TSL 2 BASIC14.2□□□□□ -0.14
COL21A1Q96P44 HEY1-202ENST00000354724 2293 ntAPPRIS P3 TSL 1 (best) BASIC14.2□□□□□ -0.14
COL21A1Q96P44 HIST1H2AG-201ENST00000359193 2250 ntAPPRIS P1 BASIC14.2□□□□□ -0.14
COL21A1Q96P44 ZMYND15-204ENST00000573751 2409 ntTSL 2 BASIC14.2□□□□□ -0.14
COL21A1Q96P44 HS6ST3-201ENST00000376705 7804 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
COL21A1Q96P44 GAS2L2-203ENST00000618498 2655 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
COL21A1Q96P44 DNAJA1-201ENST00000330899 2381 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
COL21A1Q96P44 OSGIN1-201ENST00000343939 2391 ntTSL 2 BASIC14.19□□□□□ -0.14
COL21A1Q96P44 AC060234.2-201ENST00000428825 1610 ntTSL 5 BASIC14.19□□□□□ -0.14
COL21A1Q96P44 RAPGEF4-201ENST00000397081 4299 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
COL21A1Q96P44 GRAPL-201ENST00000344415 1308 ntAPPRIS P2 TSL 1 (best) BASIC14.19□□□□□ -0.14
COL21A1Q96P44 RGR-201ENST00000358110 1349 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
COL21A1Q96P44 MRC2-202ENST00000446119 3201 ntTSL 2 BASIC14.19□□□□□ -0.14
COL21A1Q96P44 AC010327.5-201ENST00000586923 3061 ntBASIC14.19□□□□□ -0.14
COL21A1Q96P44 CHRNB4-201ENST00000261751 2623 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
COL21A1Q96P44 NAP1L1-202ENST00000393263 1896 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
COL21A1Q96P44 AP1M1-211ENST00000590756 1705 ntTSL 5 BASIC14.19□□□□□ -0.14
COL21A1Q96P44 DFNA5-201ENST00000342947 2590 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
COL21A1Q96P44 PRRT2-202ENST00000358758 2567 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
COL21A1Q96P44 KRT8P22-201ENST00000562317 1415 ntBASIC14.19□□□□□ -0.14
COL21A1Q96P44 POLR2J-201ENST00000292614 932 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
COL21A1Q96P44 BANF1-201ENST00000312175 1155 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
COL21A1Q96P44 AC114730.3-201ENST00000435195 584 ntTSL 5 BASIC14.19□□□□□ -0.14
COL21A1Q96P44 LINC01784-201ENST00000438401 378 ntTSL 2 BASIC14.19□□□□□ -0.14
COL21A1Q96P44 AL162726.2-201ENST00000438986 1017 ntBASIC14.19□□□□□ -0.14
COL21A1Q96P44 AC140481.1-201ENST00000448777 706 ntTSL 3 BASIC14.19□□□□□ -0.14
COL21A1Q96P44 LINC00841-201ENST00000451929 2126 ntTSL 2 BASIC14.19□□□□□ -0.14
COL21A1Q96P44 COX20P2-201ENST00000452636 358 ntBASIC14.19□□□□□ -0.14
COL21A1Q96P44 BX322559.1-201ENST00000456613 319 ntTSL 3 BASIC14.19□□□□□ -0.14
COL21A1Q96P44 RN7SL692P-201ENST00000464677 288 ntBASIC14.19□□□□□ -0.14
COL21A1Q96P44 TIMM8B-201ENST00000504148 819 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
COL21A1Q96P44 ASAP1-202ENST00000518721 5507 ntAPPRIS P3 TSL 5 BASIC14.19□□□□□ -0.14
COL21A1Q96P44 HBS1L-208ENST00000525067 582 ntTSL 3 BASIC14.19□□□□□ -0.14
COL21A1Q96P44 AC006064.3-201ENST00000537921 477 ntTSL 4 BASIC14.19□□□□□ -0.14
COL21A1Q96P44 LINC01089-209ENST00000542933 1220 ntTSL 3 BASIC14.19□□□□□ -0.14
COL21A1Q96P44 AC010503.1-201ENST00000596027 520 ntTSL 5 BASIC14.19□□□□□ -0.14
COL21A1Q96P44 LINC01515-215ENST00000608678 854 ntTSL 5 BASIC14.19□□□□□ -0.14
COL21A1Q96P44 IL32-235ENST00000613483 1033 ntAPPRIS ALT2 TSL 5 BASIC14.19□□□□□ -0.14
COL21A1Q96P44 IFI27-210ENST00000616764 716 ntAPPRIS P2 TSL 2 BASIC14.19□□□□□ -0.14
COL21A1Q96P44 AL033527.5-201ENST00000641382 801 ntBASIC14.19□□□□□ -0.14
COL21A1Q96P44 PIGS-203ENST00000395346 2815 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
COL21A1Q96P44 GAP43-201ENST00000305124 1691 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
COL21A1Q96P44 TNIP1-214ENST00000522226 2238 ntAPPRIS P3 TSL 2 BASIC14.19□□□□□ -0.14
COL21A1Q96P44 AIFM1-209ENST00000535724 2468 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
COL21A1Q96P44 ALDH4A1-205ENST00000538309 1940 ntTSL 2 BASIC14.19□□□□□ -0.14
COL21A1Q96P44 ILF2-205ENST00000615950 1906 ntTSL 2 BASIC14.19□□□□□ -0.14
COL21A1Q96P44 DESI2-202ENST00000302550 4208 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
COL21A1Q96P44 SCYL1-208ENST00000527009 2586 ntTSL 5 BASIC14.19□□□□□ -0.14
COL21A1Q96P44 HDAC2-206ENST00000519108 2000 ntTSL 2 BASIC14.19□□□□□ -0.14
COL21A1Q96P44 RNF123-202ENST00000432042 2670 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
COL21A1Q96P44 ZNF559-202ENST00000393883 5095 ntAPPRIS P3 TSL 2 BASIC14.18□□□□□ -0.14
COL21A1Q96P44 PAPOLA-201ENST00000216277 4519 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
COL21A1Q96P44 ARNT2-209ENST00000622346 2932 ntTSL 2 BASIC14.18□□□□□ -0.14
COL21A1Q96P44 YME1L1-202ENST00000375972 2517 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
COL21A1Q96P44 CYP1A1-210ENST00000617691 2521 ntTSL 5 BASIC14.18□□□□□ -0.14
COL21A1Q96P44 ODF3-201ENST00000325113 1307 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
COL21A1Q96P44 PFKFB4-201ENST00000232375 3586 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
COL21A1Q96P44 PPM1A-203ENST00000395076 8184 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
COL21A1Q96P44 TRIM50-202ENST00000453152 1599 ntAPPRIS P1 TSL 2 BASIC14.18□□□□□ -0.14
COL21A1Q96P44 PI4K2A-201ENST00000370631 4189 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
COL21A1Q96P44 PAX3-203ENST00000344493 3109 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
COL21A1Q96P44 DARS-AS1-209ENST00000594219 1420 ntTSL 5 BASIC14.18□□□□□ -0.14
COL21A1Q96P44 VAC14-202ENST00000536184 2161 ntTSL 2 BASIC14.18□□□□□ -0.14
COL21A1Q96P44 TSFM-201ENST00000323833 1218 ntAPPRIS ALT2 TSL 1 (best) BASIC14.18□□□□□ -0.14
COL21A1Q96P44 LCE3A-201ENST00000335674 270 ntAPPRIS P1 BASIC14.18□□□□□ -0.14
COL21A1Q96P44 HIST3H2A-201ENST00000366695 895 ntAPPRIS P1 BASIC14.18□□□□□ -0.14
COL21A1Q96P44 EDF1-203ENST00000371649 790 ntTSL 2 BASIC14.18□□□□□ -0.14
COL21A1Q96P44 MPV17-203ENST00000380044 1005 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
COL21A1Q96P44 MPV17-208ENST00000405076 603 ntTSL 5 BASIC14.18□□□□□ -0.14
COL21A1Q96P44 GNG4-205ENST00000484517 684 ntAPPRIS P1 TSL 2 BASIC14.18□□□□□ -0.14
COL21A1Q96P44 AC011495.1-201ENST00000498085 584 ntBASIC14.18□□□□□ -0.14
COL21A1Q96P44 AP005018.1-201ENST00000525475 301 ntBASIC14.18□□□□□ -0.14
COL21A1Q96P44 AP003068.1-201ENST00000528887 544 ntTSL 4 BASIC14.18□□□□□ -0.14
COL21A1Q96P44 ENPP7P5-201ENST00000541031 1031 ntBASIC14.18□□□□□ -0.14
COL21A1Q96P44 AC027575.2-201ENST00000585258 1295 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
COL21A1Q96P44 COL25A1-201ENST00000399126 2674 ntAPPRIS ALT2 TSL 5 BASIC14.18□□□□□ -0.14
COL21A1Q96P44 LRRC41-201ENST00000343304 2947 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
COL21A1Q96P44 C21orf58-202ENST00000397679 2900 ntAPPRIS ALT2 TSL 2 BASIC14.18□□□□□ -0.14
COL21A1Q96P44 MAGEA2-209ENST00000623806 2025 ntAPPRIS P1 TSL 2 BASIC14.18□□□□□ -0.14
Retrieved 100 of 98,524 protein–RNA pairs in 67.5 ms