Protein–RNA interactions for Protein: Q96LD4

TRIM47, Tripartite motif-containing protein 47, humanhuman

Predictions only

Length 638 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM47Q96LD4 RNMTL1P1-201ENST00000454103 560 ntBASIC17.48■□□□□ 0.39
TRIM47Q96LD4 RN7SL818P-201ENST00000485099 259 ntBASIC17.48■□□□□ 0.39
TRIM47Q96LD4 AC005586.1-201ENST00000488310 577 ntTSL 4 BASIC17.48■□□□□ 0.39
TRIM47Q96LD4 AL135838.1-202ENST00000556411 441 ntTSL 2 BASIC17.48■□□□□ 0.39
TRIM47Q96LD4 BNIP3P13-201ENST00000599968 566 ntBASIC17.48■□□□□ 0.39
TRIM47Q96LD4 RN7SL725P-201ENST00000606439 259 ntBASIC17.48■□□□□ 0.39
TRIM47Q96LD4 PPHLN1-201ENST00000256678 1820 ntTSL 2 BASIC17.48■□□□□ 0.39
TRIM47Q96LD4 DIS3-202ENST00000377780 5232 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
TRIM47Q96LD4 FAM32A-201ENST00000263384 1455 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
TRIM47Q96LD4 DMTN-202ENST00000358242 2772 ntTSL 5 BASIC17.48■□□□□ 0.39
TRIM47Q96LD4 USH1C-202ENST00000318024 2237 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
TRIM47Q96LD4 ELMOD1-201ENST00000265840 2852 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
TRIM47Q96LD4 MIR600HG-201ENST00000449175 5984 ntBASIC17.48■□□□□ 0.39
TRIM47Q96LD4 BCL9L-202ENST00000526143 5514 ntTSL 5 BASIC17.48■□□□□ 0.39
TRIM47Q96LD4 CLEC18C-210ENST00000569347 1970 ntAPPRIS P2 TSL 1 (best) BASIC17.48■□□□□ 0.39
TRIM47Q96LD4 HYAL2-201ENST00000357750 2055 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
TRIM47Q96LD4 TMBIM1-201ENST00000258412 2371 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
TRIM47Q96LD4 KRT8P14-201ENST00000414254 1442 ntBASIC17.47■□□□□ 0.39
TRIM47Q96LD4 CAP2-206ENST00000489374 1430 ntTSL 2 BASIC17.47■□□□□ 0.39
TRIM47Q96LD4 DCTN1-203ENST00000409240 4365 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
TRIM47Q96LD4 CCAR2-201ENST00000308511 4853 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
TRIM47Q96LD4 NME7-201ENST00000367811 1642 ntAPPRIS P3 TSL 1 (best) BASIC17.47■□□□□ 0.39
TRIM47Q96LD4 ITGB7-201ENST00000267082 2867 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
TRIM47Q96LD4 PLCXD2-204ENST00000477665 1721 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
TRIM47Q96LD4 MTA2-201ENST00000278823 3058 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
TRIM47Q96LD4 ZBTB37-203ENST00000367704 2323 ntTSL 2 BASIC17.47■□□□□ 0.39
TRIM47Q96LD4 MECR-202ENST00000373791 2416 ntTSL 2 BASIC17.47■□□□□ 0.39
TRIM47Q96LD4 CDK11B-201ENST00000340677 2534 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
TRIM47Q96LD4 TTC28-AS1-219ENST00000454741 5064 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
TRIM47Q96LD4 FYN-205ENST00000368682 3234 ntAPPRIS ALT1 TSL 5 BASIC17.47■□□□□ 0.39
TRIM47Q96LD4 TPRKB-202ENST00000318190 819 ntTSL 5 BASIC17.47■□□□□ 0.39
TRIM47Q96LD4 FRMD3-202ENST00000328788 964 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
TRIM47Q96LD4 LAMTOR4-201ENST00000341942 605 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
TRIM47Q96LD4 TMEM239-202ENST00000380585 571 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
TRIM47Q96LD4 AC073316.1-202ENST00000402115 988 ntTSL 5 BASIC17.47■□□□□ 0.39
TRIM47Q96LD4 EVA1A-204ENST00000410071 777 ntAPPRIS P2 TSL 3 BASIC17.47■□□□□ 0.39
TRIM47Q96LD4 AL136988.1-201ENST00000414640 1029 ntTSL 3 BASIC17.47■□□□□ 0.39
TRIM47Q96LD4 Z82214.1-201ENST00000419643 988 ntTSL 3 BASIC17.47■□□□□ 0.39
TRIM47Q96LD4 AC114501.1-201ENST00000445949 172 ntBASIC17.47■□□□□ 0.39
TRIM47Q96LD4 TMEM14B-210ENST00000473276 730 ntTSL 3 BASIC17.47■□□□□ 0.39
TRIM47Q96LD4 SRSF10-211ENST00000484146 1089 ntTSL 2 BASIC17.47■□□□□ 0.39
TRIM47Q96LD4 CLDN11-207ENST00000486975 1139 ntTSL 2 BASIC17.47■□□□□ 0.39
TRIM47Q96LD4 AP000438.1-201ENST00000543624 749 ntTSL 3 BASIC17.47■□□□□ 0.39
TRIM47Q96LD4 LINC01475-201ENST00000548010 766 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
TRIM47Q96LD4 AC106820.3-201ENST00000561653 397 ntBASIC17.47■□□□□ 0.39
TRIM47Q96LD4 CMTM3-215ENST00000568477 687 ntTSL 3 BASIC17.47■□□□□ 0.39
TRIM47Q96LD4 NAT9-212ENST00000581136 1011 ntAPPRIS P1 TSL 2 BASIC17.47■□□□□ 0.39
TRIM47Q96LD4 CENPX-208ENST00000584347 799 ntTSL 2 BASIC17.47■□□□□ 0.39
TRIM47Q96LD4 SELENOW-204ENST00000595615 535 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
TRIM47Q96LD4 NEAT1-203ENST00000601801 487 ntTSL 4 BASIC17.47■□□□□ 0.39
TRIM47Q96LD4 AC073352.2-201ENST00000609385 439 ntBASIC17.47■□□□□ 0.39
TRIM47Q96LD4 SELENOW-216ENST00000612212 875 ntTSL 5 BASIC17.47■□□□□ 0.39
TRIM47Q96LD4 AL805961.1-203ENST00000641078 1258 ntBASIC17.47■□□□□ 0.39
TRIM47Q96LD4 FGFR1OP-201ENST00000349556 1484 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
TRIM47Q96LD4 CAMKK2-203ENST00000347034 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
TRIM47Q96LD4 KAT7-210ENST00000509773 1774 ntTSL 2 BASIC17.47■□□□□ 0.39
TRIM47Q96LD4 HERPUD1-201ENST00000300302 1862 ntAPPRIS ALT1 TSL 1 (best) BASIC17.47■□□□□ 0.39
TRIM47Q96LD4 PAK1-210ENST00000528203 1878 ntTSL 2 BASIC17.47■□□□□ 0.39
TRIM47Q96LD4 IVL-201ENST00000368764 2153 ntAPPRIS P1 TSL 2 BASIC17.47■□□□□ 0.39
TRIM47Q96LD4 STAU2-219ENST00000522509 2173 ntTSL 2 BASIC17.47■□□□□ 0.39
TRIM47Q96LD4 CREB3L2-204ENST00000456390 2360 ntTSL 2 BASIC17.47■□□□□ 0.39
TRIM47Q96LD4 AQP1-204ENST00000441328 2487 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
TRIM47Q96LD4 C16orf54-201ENST00000329410 2585 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
TRIM47Q96LD4 ZCCHC4-201ENST00000302874 2785 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
TRIM47Q96LD4 UBAC2-202ENST00000376440 2525 ntTSL 2 BASIC17.47■□□□□ 0.39
TRIM47Q96LD4 LINC01136-203ENST00000457348 2539 ntTSL 2 BASIC17.47■□□□□ 0.39
TRIM47Q96LD4 CELP-203ENST00000624767 2414 ntTSL 5 BASIC17.47■□□□□ 0.39
TRIM47Q96LD4 CNDP1-201ENST00000358821 2215 ntAPPRIS P2 TSL 1 (best) BASIC17.47■□□□□ 0.39
TRIM47Q96LD4 NFATC4-204ENST00000424781 5488 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
TRIM47Q96LD4 RPS9-205ENST00000402367 1617 ntTSL 3 BASIC17.47■□□□□ 0.39
TRIM47Q96LD4 DCUN1D4-203ENST00000451288 4269 ntTSL 2 BASIC17.47■□□□□ 0.39
TRIM47Q96LD4 AC091951.1-201ENST00000512854 2465 ntBASIC17.46■□□□□ 0.39
TRIM47Q96LD4 TRNT1-201ENST00000251607 2276 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
TRIM47Q96LD4 MINK1-201ENST00000347992 4863 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
TRIM47Q96LD4 AAMP-201ENST00000248450 1886 ntAPPRIS P3 TSL 1 (best) BASIC17.46■□□□□ 0.39
TRIM47Q96LD4 KIF18B-204ENST00000593135 2745 ntAPPRIS P3 TSL 5 BASIC17.46■□□□□ 0.39
TRIM47Q96LD4 NMNAT3-201ENST00000296202 1569 ntAPPRIS P1 TSL 5 BASIC17.46■□□□□ 0.39
TRIM47Q96LD4 ISCA2-204ENST00000556816 2626 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
TRIM47Q96LD4 AC007787.1-201ENST00000588095 1583 ntBASIC17.46■□□□□ 0.39
TRIM47Q96LD4 ZP3-201ENST00000336517 1483 ntAPPRIS P3 TSL 1 (best) BASIC17.46■□□□□ 0.39
TRIM47Q96LD4 RNASE10-201ENST00000328444 717 ntAPPRIS P1 BASIC17.46■□□□□ 0.39
TRIM47Q96LD4 TNNT2-206ENST00000367320 1007 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
TRIM47Q96LD4 NPPA-201ENST00000376476 728 ntTSL 3 BASIC17.46■□□□□ 0.39
TRIM47Q96LD4 CSH2-203ENST00000392886 920 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
TRIM47Q96LD4 SMIM29-202ENST00000394990 792 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
TRIM47Q96LD4 TCP10-202ENST00000397829 2141 ntAPPRIS P2 TSL 1 (best) BASIC17.46■□□□□ 0.39
TRIM47Q96LD4 SLC16A6P1-201ENST00000413214 1059 ntBASIC17.46■□□□□ 0.39
TRIM47Q96LD4 AC104073.2-201ENST00000453737 312 ntBASIC17.46■□□□□ 0.39
TRIM47Q96LD4 AC106794.1-201ENST00000506935 792 ntBASIC17.46■□□□□ 0.39
TRIM47Q96LD4 CHCHD7-211ENST00000521831 573 ntTSL 2 BASIC17.46■□□□□ 0.39
TRIM47Q96LD4 CSH2-206ENST00000560142 749 ntTSL 5 BASIC17.46■□□□□ 0.39
TRIM47Q96LD4 AC126696.1-201ENST00000561567 756 ntTSL 3 BASIC17.46■□□□□ 0.39
TRIM47Q96LD4 AC004923.1-202ENST00000642106 209 ntBASIC17.46■□□□□ 0.39
TRIM47Q96LD4 ROPN1-203ENST00000459660 1909 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
TRIM47Q96LD4 PDGFRL-203ENST00000541323 1905 ntAPPRIS P1 TSL 2 BASIC17.46■□□□□ 0.39
TRIM47Q96LD4 OPA1-208ENST00000392438 6340 ntAPPRIS ALT1 TSL 1 (best) BASIC17.46■□□□□ 0.39
TRIM47Q96LD4 SUCO-210ENST00000616058 5495 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
TRIM47Q96LD4 AL158070.2-201ENST00000623713 1621 ntBASIC17.46■□□□□ 0.39
TRIM47Q96LD4 MX1-210ENST00000455164 2810 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
TRIM47Q96LD4 COL11A2-201ENST00000341947 6425 ntAPPRIS ALT2 TSL 5 BASIC17.46■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 42.9 ms