Protein–RNA interactions for Protein: Q96EP1

CHFR, E3 ubiquitin-protein ligase CHFR, humanhuman

Predictions only

Length 664 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHFRQ96EP1 CANX-201ENST00000247461 4260 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
CHFRQ96EP1 PDE6G-201ENST00000331056 1029 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
CHFRQ96EP1 COX8C-201ENST00000342144 533 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
CHFRQ96EP1 ARMCX3-AS1-201ENST00000454228 490 ntTSL 3 BASIC15.12■□□□□ 0.01
CHFRQ96EP1 AP000696.1-201ENST00000457669 1133 ntTSL 3 BASIC15.12■□□□□ 0.01
CHFRQ96EP1 LYRM4-206ENST00000468929 1168 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
CHFRQ96EP1 AC008267.1-201ENST00000474858 1069 ntBASIC15.12■□□□□ 0.01
CHFRQ96EP1 PPP2R1A-209ENST00000477989 444 ntTSL 3 BASIC15.12■□□□□ 0.01
CHFRQ96EP1 FAM153B-214ENST00000512862 1071 ntAPPRIS ALT2 TSL 2 BASIC15.12■□□□□ 0.01
CHFRQ96EP1 IFITM1-204ENST00000528780 730 ntAPPRIS P1 TSL 3 BASIC15.12■□□□□ 0.01
CHFRQ96EP1 MAGEA8-204ENST00000535454 2112 ntAPPRIS P1 TSL 3 BASIC15.12■□□□□ 0.01
CHFRQ96EP1 UBE3B-206ENST00000536398 1120 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
CHFRQ96EP1 ELOF1-202ENST00000586120 658 ntAPPRIS P1 TSL 3 BASIC15.12■□□□□ 0.01
CHFRQ96EP1 MUC1-226ENST00000614519 1093 ntTSL 2 BASIC15.12■□□□□ 0.01
CHFRQ96EP1 AP003419.4-201ENST00000616071 517 ntBASIC15.12■□□□□ 0.01
CHFRQ96EP1 AC007718.1-201ENST00000621078 280 ntBASIC15.12■□□□□ 0.01
CHFRQ96EP1 AC027601.3-201ENST00000622907 509 ntBASIC15.12■□□□□ 0.01
CHFRQ96EP1 MYH14-204ENST00000440075 4247 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
CHFRQ96EP1 TPBG-201ENST00000369750 6484 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
CHFRQ96EP1 AC097376.2-201ENST00000608661 2510 ntTSL 5 BASIC15.12■□□□□ 0.01
CHFRQ96EP1 NDRG1-202ENST00000414097 3755 ntAPPRIS P1 TSL 2 BASIC15.12■□□□□ 0.01
CHFRQ96EP1 LINC00996-201ENST00000477392 2043 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
CHFRQ96EP1 CYP2U1-201ENST00000332884 4944 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
CHFRQ96EP1 ZBTB10-203ENST00000430430 10132 ntAPPRIS P3 TSL 5 BASIC15.12■□□□□ 0.01
CHFRQ96EP1 RWDD1-202ENST00000466444 5522 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
CHFRQ96EP1 SRCIN1-215ENST00000621492 4644 ntAPPRIS ALT2 TSL 5 BASIC15.12■□□□□ 0.01
CHFRQ96EP1 COL4A3BP-204ENST00000405807 2843 ntAPPRIS P1 TSL 5 BASIC15.12■□□□□ 0.01
CHFRQ96EP1 UAP1L1-202ENST00000409858 3365 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
CHFRQ96EP1 ANKRD33-201ENST00000301190 1935 ntTSL 2 BASIC15.11■□□□□ 0.01
CHFRQ96EP1 MGAT4B-202ENST00000337755 3027 ntTSL 2 BASIC15.11■□□□□ 0.01
CHFRQ96EP1 MGME1-202ENST00000377709 1936 ntTSL 2 BASIC15.11■□□□□ 0.01
CHFRQ96EP1 RASGEF1A-204ENST00000395810 3235 ntAPPRIS P3 TSL 1 (best) BASIC15.11■□□□□ 0.01
CHFRQ96EP1 TMEM132D-AS2-201ENST00000542578 1568 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
CHFRQ96EP1 FOXO3-201ENST00000343882 7308 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
CHFRQ96EP1 NRXN1-204ENST00000401669 5870 ntAPPRIS ALT1 TSL 5 BASIC15.11■□□□□ 0.01
CHFRQ96EP1 CKMT1B-201ENST00000300283 1779 ntAPPRIS P1 TSL 5 BASIC15.11■□□□□ 0.01
CHFRQ96EP1 FH-201ENST00000366560 1797 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
CHFRQ96EP1 CKMT1A-204ENST00000434505 1779 ntAPPRIS P1 TSL 5 BASIC15.11■□□□□ 0.01
CHFRQ96EP1 AL022326.1-201ENST00000434516 1778 ntTSL 2 BASIC15.11■□□□□ 0.01
CHFRQ96EP1 TMEM57-202ENST00000399766 3294 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
CHFRQ96EP1 ZFP41-201ENST00000330701 4797 ntAPPRIS P1 TSL 2 BASIC15.11■□□□□ 0.01
CHFRQ96EP1 BBS5-201ENST00000295240 3475 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
CHFRQ96EP1 NOTO-201ENST00000398468 2749 ntAPPRIS P1 TSL 2 BASIC15.11■□□□□ 0.01
CHFRQ96EP1 KCNJ18-201ENST00000567955 2196 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
CHFRQ96EP1 SGCE-204ENST00000428696 1409 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
CHFRQ96EP1 SCGN-203ENST00000612225 1402 ntTSL 5 BASIC15.11■□□□□ 0.01
CHFRQ96EP1 SMTNL1-202ENST00000527972 1649 ntAPPRIS P2 TSL 5 BASIC15.11■□□□□ 0.01
CHFRQ96EP1 TBC1D17-202ENST00000535102 2025 ntTSL 2 BASIC15.11■□□□□ 0.01
CHFRQ96EP1 ABHD4-201ENST00000216327 716 ntTSL 5 BASIC15.11■□□□□ 0.01
CHFRQ96EP1 HIST1H1B-201ENST00000331442 681 ntAPPRIS P1 BASIC15.11■□□□□ 0.01
CHFRQ96EP1 TNNT2-206ENST00000367320 1007 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
CHFRQ96EP1 AC239868.1-201ENST00000369385 493 ntBASIC15.11■□□□□ 0.01
CHFRQ96EP1 AC026316.1-201ENST00000398900 414 ntBASIC15.11■□□□□ 0.01
CHFRQ96EP1 LBH-202ENST00000401506 485 ntTSL 3 BASIC15.11■□□□□ 0.01
CHFRQ96EP1 AL606491.1-201ENST00000412797 483 ntTSL 3 BASIC15.11■□□□□ 0.01
CHFRQ96EP1 PEX13-203ENST00000414712 1014 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
CHFRQ96EP1 HCFC1-AS1-201ENST00000438219 350 ntTSL 3 BASIC15.11■□□□□ 0.01
CHFRQ96EP1 MYO16-AS1-201ENST00000439299 580 ntTSL 5 BASIC15.11■□□□□ 0.01
CHFRQ96EP1 RAMP3-202ENST00000481345 559 ntAPPRIS P2 TSL 4 BASIC15.11■□□□□ 0.01
CHFRQ96EP1 RBM4B-202ENST00000524637 867 ntTSL 5 BASIC15.11■□□□□ 0.01
CHFRQ96EP1 AP005264.3-201ENST00000592370 485 ntTSL 5 BASIC15.11■□□□□ 0.01
CHFRQ96EP1 MAP3K14-AS1-210ENST00000592422 831 ntTSL 3 BASIC15.11■□□□□ 0.01
CHFRQ96EP1 ACP7-202ENST00000594229 1149 ntTSL 5 BASIC15.11■□□□□ 0.01
CHFRQ96EP1 HIST2H2BB-202ENST00000609585 563 ntTSL 2 BASIC15.11■□□□□ 0.01
CHFRQ96EP1 AC103691.2-201ENST00000618824 433 ntBASIC15.11■□□□□ 0.01
CHFRQ96EP1 NR2F2-AS1-215ENST00000620029 1223 ntTSL 5 BASIC15.11■□□□□ 0.01
CHFRQ96EP1 KRT8P21-201ENST00000430398 1491 ntBASIC15.11■□□□□ 0.01
CHFRQ96EP1 REM1-201ENST00000201979 1665 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
CHFRQ96EP1 UGT3A1-204ENST00000507113 1650 ntTSL 2 BASIC15.11■□□□□ 0.01
CHFRQ96EP1 AC144522.1-201ENST00000625111 1658 ntBASIC15.11■□□□□ 0.01
CHFRQ96EP1 PLAG1-203ENST00000429357 1899 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
CHFRQ96EP1 HGNC:24955-201ENST00000303177 2452 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
CHFRQ96EP1 RFK-201ENST00000376736 2684 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
CHFRQ96EP1 TMTC2-203ENST00000548305 2682 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
CHFRQ96EP1 ICA1L-201ENST00000358299 3457 ntAPPRIS P1 TSL 2 BASIC15.11■□□□□ 0.01
CHFRQ96EP1 C4A-243ENST00000428956 5460 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
CHFRQ96EP1 C4B-202ENST00000435363 5460 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
CHFRQ96EP1 AC068418.2-201ENST00000577309 3703 ntBASIC15.11■□□□□ 0.01
CHFRQ96EP1 YTHDF1-202ENST00000370339 3301 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
CHFRQ96EP1 PHTF1-201ENST00000357783 2747 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
CHFRQ96EP1 JKAMP-207ENST00000554271 2137 ntTSL 2 BASIC15.11■□□□□ 0.01
CHFRQ96EP1 SIGLEC6-202ENST00000346477 1940 ntAPPRIS ALT2 TSL 2 BASIC15.11■□□□□ 0.01
CHFRQ96EP1 IL1RN-203ENST00000361779 1922 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
CHFRQ96EP1 FGF7P3-202ENST00000640245 1707 ntTSL 4 BASIC15.11■□□□□ 0.01
CHFRQ96EP1 MYLK2-201ENST00000375985 2787 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
CHFRQ96EP1 CNOT3-204ENST00000447684 2765 ntTSL 2 BASIC15.11■□□□□ 0.01
CHFRQ96EP1 PICALM-204ENST00000526033 3613 ntAPPRIS ALT1 TSL 1 (best) BASIC15.11■□□□□ 0.01
CHFRQ96EP1 Z99756.1-201ENST00000458463 1951 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
CHFRQ96EP1 APLN-201ENST00000429967 3205 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
CHFRQ96EP1 DEF8-219ENST00000567874 1554 ntTSL 2 BASIC15.11■□□□□ 0.01
CHFRQ96EP1 PSMC3-213ENST00000619920 1580 ntAPPRIS P2 TSL 1 (best) BASIC15.11■□□□□ 0.01
CHFRQ96EP1 CRY1-201ENST00000008527 3267 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
CHFRQ96EP1 NIT1-203ENST00000368009 1362 ntAPPRIS P3 TSL 1 (best) BASIC15.11■□□□□ 0.01
CHFRQ96EP1 LRIT1-201ENST00000372105 2228 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
CHFRQ96EP1 CHIA-204ENST00000369740 1625 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
CHFRQ96EP1 AKR1B15-202ENST00000457545 1621 ntAPPRIS P1 TSL 5 BASIC15.1■□□□□ 0.01
CHFRQ96EP1 PITPNC1-203ENST00000580974 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
CHFRQ96EP1 DDOST-201ENST00000375048 2079 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
CHFRQ96EP1 PCDH1-203ENST00000394536 3827 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
CHFRQ96EP1 SLC4A2-214ENST00000485713 4925 ntAPPRIS P3 TSL 1 (best) BASIC15.1■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 33.1 ms