Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 ZNF786-201ENST00000316286 3144 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
SMC1BQ8NDV3 CPD-201ENST00000225719 9394 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
SMC1BQ8NDV3 MBD3L3-201ENST00000333843 775 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
SMC1BQ8NDV3 SCGN-202ENST00000377961 1447 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
SMC1BQ8NDV3 LAT2-204ENST00000398475 2453 ntAPPRIS P2 TSL 1 (best) BASIC17.51■□□□□ 0.39
SMC1BQ8NDV3 DDX39B-AS1-208ENST00000420520 516 ntTSL 3 BASIC17.51■□□□□ 0.39
SMC1BQ8NDV3 GRAMD1A-203ENST00000424536 808 ntTSL 2 BASIC17.51■□□□□ 0.39
SMC1BQ8NDV3 CISH-202ENST00000443053 2167 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
SMC1BQ8NDV3 AC002127.2-201ENST00000444032 792 ntTSL 3 BASIC17.51■□□□□ 0.39
SMC1BQ8NDV3 AC087071.1-201ENST00000469264 427 ntTSL 2 BASIC17.51■□□□□ 0.39
SMC1BQ8NDV3 AC138409.2-203ENST00000508395 553 ntTSL 4 BASIC17.51■□□□□ 0.39
SMC1BQ8NDV3 LINC02171-201ENST00000508619 1033 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
SMC1BQ8NDV3 PAX5-210ENST00000520281 969 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
SMC1BQ8NDV3 HS6ST2-204ENST00000521489 2607 ntTSL 5 BASIC17.51■□□□□ 0.39
SMC1BQ8NDV3 AC090735.1-201ENST00000523881 488 ntTSL 4 BASIC17.51■□□□□ 0.39
SMC1BQ8NDV3 OR5BD1P-201ENST00000532527 817 ntBASIC17.51■□□□□ 0.39
SMC1BQ8NDV3 GPD1-205ENST00000548814 1591 ntTSL 2 BASIC17.51■□□□□ 0.39
SMC1BQ8NDV3 LETMD1-235ENST00000552739 1713 ntTSL 2 BASIC17.51■□□□□ 0.39
SMC1BQ8NDV3 AL590235.1-201ENST00000564650 861 ntBASIC17.51■□□□□ 0.39
SMC1BQ8NDV3 AC019294.2-203ENST00000569596 594 ntTSL 3 BASIC17.51■□□□□ 0.39
SMC1BQ8NDV3 MIR6125-201ENST00000618986 96 ntBASIC17.51■□□□□ 0.39
SMC1BQ8NDV3 SLC12A5-219ENST00000628272 401 ntTSL 3 BASIC17.51■□□□□ 0.39
SMC1BQ8NDV3 CYP4B1-215ENST00000640628 969 ntTSL 5 BASIC17.51■□□□□ 0.39
SMC1BQ8NDV3 VPS37C-201ENST00000301765 2865 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
SMC1BQ8NDV3 NOX5-204ENST00000455873 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
SMC1BQ8NDV3 PDE9A-208ENST00000398225 1963 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
SMC1BQ8NDV3 MTMR9-202ENST00000526292 1960 ntTSL 2 BASIC17.51■□□□□ 0.39
SMC1BQ8NDV3 RBM4B-201ENST00000310046 1840 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
SMC1BQ8NDV3 SRSF12-201ENST00000452027 3599 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
SMC1BQ8NDV3 KLC1-212ENST00000553286 3135 ntTSL 5 BASIC17.51■□□□□ 0.39
SMC1BQ8NDV3 HSD17B6-206ENST00000555159 1525 ntAPPRIS P1 TSL 5 BASIC17.51■□□□□ 0.39
SMC1BQ8NDV3 DNMT3L-204ENST00000628202 1364 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
SMC1BQ8NDV3 FTX-216ENST00000638985 1367 ntTSL 5 BASIC17.51■□□□□ 0.39
SMC1BQ8NDV3 DARS-201ENST00000264161 2361 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
SMC1BQ8NDV3 AC068587.6-202ENST00000641839 5619 ntBASIC17.51■□□□□ 0.39
SMC1BQ8NDV3 GPER1-202ENST00000397088 2639 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
SMC1BQ8NDV3 AP000487.1-202ENST00000500185 2602 ntTSL 2 BASIC17.51■□□□□ 0.39
SMC1BQ8NDV3 AC025183.3-201ENST00000623526 1482 ntBASIC17.5■□□□□ 0.39
SMC1BQ8NDV3 ANKRD26P3-201ENST00000454044 2748 ntBASIC17.5■□□□□ 0.39
SMC1BQ8NDV3 MOV10L1-201ENST00000262794 3960 ntAPPRIS P3 TSL 1 (best) BASIC17.5■□□□□ 0.39
SMC1BQ8NDV3 TRPV4-205ENST00000537083 2436 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
SMC1BQ8NDV3 MIER1-205ENST00000371014 1728 ntTSL 2 BASIC17.5■□□□□ 0.39
SMC1BQ8NDV3 CRELD1-203ENST00000397170 1728 ntAPPRIS P1 TSL 5 BASIC17.5■□□□□ 0.39
SMC1BQ8NDV3 CDKN1A-204ENST00000448526 2104 ntAPPRIS P1 TSL 3 BASIC17.5■□□□□ 0.39
SMC1BQ8NDV3 BFSP2-201ENST00000302334 1558 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
SMC1BQ8NDV3 OXA1L-212ENST00000604262 1571 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
SMC1BQ8NDV3 DDOST-206ENST00000602624 1963 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
SMC1BQ8NDV3 HIST1H1B-201ENST00000331442 681 ntAPPRIS P1 BASIC17.5■□□□□ 0.39
SMC1BQ8NDV3 Metazoa_SRP.4-201ENST00000366232 298 ntBASIC17.5■□□□□ 0.39
SMC1BQ8NDV3 AC010900.1-201ENST00000449849 1296 ntBASIC17.5■□□□□ 0.39
SMC1BQ8NDV3 AL035414.1-201ENST00000451327 857 ntBASIC17.5■□□□□ 0.39
SMC1BQ8NDV3 LRRC75A-AS1-213ENST00000484836 821 ntTSL 2 BASIC17.5■□□□□ 0.39
SMC1BQ8NDV3 RN7SL530P-201ENST00000485097 298 ntBASIC17.5■□□□□ 0.39
SMC1BQ8NDV3 AC093826.1-201ENST00000508655 993 ntBASIC17.5■□□□□ 0.39
SMC1BQ8NDV3 AC135782.2-201ENST00000562040 472 ntTSL 3 BASIC17.5■□□□□ 0.39
SMC1BQ8NDV3 NPLOC4-209ENST00000572760 946 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
SMC1BQ8NDV3 SELENOW-212ENST00000601048 888 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
SMC1BQ8NDV3 AL118522.1-201ENST00000611368 560 ntBASIC17.5■□□□□ 0.39
SMC1BQ8NDV3 ZNF18-204ENST00000580306 2330 ntAPPRIS P3 TSL 2 BASIC17.5■□□□□ 0.39
SMC1BQ8NDV3 SIGLEC8-203ENST00000430817 1528 ntTSL 2 BASIC17.5■□□□□ 0.39
SMC1BQ8NDV3 PITPNM2-208ENST00000542749 6660 ntAPPRIS P3 TSL 1 (best) BASIC17.5■□□□□ 0.39
SMC1BQ8NDV3 ZMYND11-208ENST00000397962 2150 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
SMC1BQ8NDV3 HMBOX1-212ENST00000558662 1765 ntTSL 5 BASIC17.5■□□□□ 0.39
SMC1BQ8NDV3 TMEM127-202ENST00000432959 3099 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
SMC1BQ8NDV3 SPATA21-201ENST00000335496 2015 ntAPPRIS P2 TSL 1 (best) BASIC17.5■□□□□ 0.39
SMC1BQ8NDV3 SFXN1-201ENST00000321442 4231 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
SMC1BQ8NDV3 LGMN-202ENST00000393218 2115 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
SMC1BQ8NDV3 AGGF1P2-201ENST00000426656 2106 ntBASIC17.5■□□□□ 0.39
SMC1BQ8NDV3 HNF1B-207ENST00000621123 1971 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
SMC1BQ8NDV3 AC007326.2-201ENST00000624224 7579 ntBASIC17.49■□□□□ 0.39
SMC1BQ8NDV3 WSCD1-210ENST00000574946 5884 ntAPPRIS P1 TSL 2 BASIC17.49■□□□□ 0.39
SMC1BQ8NDV3 AL138725.1-201ENST00000407347 1314 ntBASIC17.49■□□□□ 0.39
SMC1BQ8NDV3 DHRS7-209ENST00000557185 1322 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
SMC1BQ8NDV3 WNT10B-203ENST00000407467 1802 ntTSL 2 BASIC17.49■□□□□ 0.39
SMC1BQ8NDV3 NDRG2-209ENST00000397853 2079 ntAPPRIS P4 TSL 2 BASIC17.49■□□□□ 0.39
SMC1BQ8NDV3 ATXN7-213ENST00000538065 6842 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
SMC1BQ8NDV3 C7orf31-201ENST00000283905 2673 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
SMC1BQ8NDV3 C2orf81-206ENST00000640868 2407 ntAPPRIS ALT2 BASIC17.49■□□□□ 0.39
SMC1BQ8NDV3 MIR762HG-203ENST00000570025 1429 ntTSL 2 BASIC17.49■□□□□ 0.39
SMC1BQ8NDV3 CACNA1G-205ENST00000360761 7497 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
SMC1BQ8NDV3 PCDH8P1-201ENST00000428983 2773 ntBASIC17.49■□□□□ 0.39
SMC1BQ8NDV3 NOX5-209ENST00000530406 2289 ntAPPRIS P4 TSL 1 (best) BASIC17.49■□□□□ 0.39
SMC1BQ8NDV3 PDCD2-208ENST00000541970 3378 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
SMC1BQ8NDV3 CTCFL-210ENST00000481655 1512 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
SMC1BQ8NDV3 ATP5H-202ENST00000344546 553 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
SMC1BQ8NDV3 CLCNKB-201ENST00000375667 2129 ntTSL 2 BASIC17.49■□□□□ 0.39
SMC1BQ8NDV3 KCNE1-203ENST00000399286 1204 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
SMC1BQ8NDV3 SAPCD1-208ENST00000415669 916 ntAPPRIS P2 TSL 1 (best) BASIC17.49■□□□□ 0.39
SMC1BQ8NDV3 AL589986.1-201ENST00000429230 789 ntTSL 5 BASIC17.49■□□□□ 0.39
SMC1BQ8NDV3 UPK1A-AS1-201ENST00000443196 795 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
SMC1BQ8NDV3 C11orf1-202ENST00000528125 534 ntTSL 2 BASIC17.49■□□□□ 0.39
SMC1BQ8NDV3 URB1-AS1-201ENST00000534991 831 ntBASIC17.49■□□□□ 0.39
SMC1BQ8NDV3 NR4A1-209ENST00000548232 1101 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
SMC1BQ8NDV3 APOPT1-215ENST00000556253 783 ntTSL 3 BASIC17.49■□□□□ 0.39
SMC1BQ8NDV3 TMEM202-AS1-201ENST00000562573 723 ntTSL 3 BASIC17.49■□□□□ 0.39
SMC1BQ8NDV3 PHF23-213ENST00000613632 850 ntTSL 5 BASIC17.49■□□□□ 0.39
SMC1BQ8NDV3 RPL13A-213ENST00000621674 1098 ntTSL 5 BASIC17.49■□□□□ 0.39
SMC1BQ8NDV3 MAPK8IP1-202ENST00000395629 3180 ntTSL 5 BASIC17.49■□□□□ 0.39
SMC1BQ8NDV3 AL109809.1-201ENST00000418979 1367 ntBASIC17.49■□□□□ 0.39
SMC1BQ8NDV3 EIF4H-201ENST00000265753 2679 ntAPPRIS P4 TSL 2 BASIC17.49■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 55.9 ms