Protein–RNA interactions for Protein: Q5VIR6

VPS53, Vacuolar protein sorting-associated protein 53 homolog, humanhuman

Predictions only

Length 699 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53Q5VIR6 ADAM33-206ENST00000617732 1971 ntTSL 5 BASIC18.06■□□□□ 0.48
VPS53Q5VIR6 EFHC1-212ENST00000635984 3293 ntTSL 5 BASIC18.06■□□□□ 0.48
VPS53Q5VIR6 CPSF7-205ENST00000439958 3524 ntAPPRIS ALT1 TSL 1 (best) BASIC18.06■□□□□ 0.48
VPS53Q5VIR6 RIMS1-216ENST00000521978 5079 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
VPS53Q5VIR6 CCDC50-201ENST00000392455 8429 ntAPPRIS ALT1 TSL 1 (best) BASIC18.06■□□□□ 0.48
VPS53Q5VIR6 ESRRB-207ENST00000556177 1427 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
VPS53Q5VIR6 MYLK2-202ENST00000375994 2956 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
VPS53Q5VIR6 SPATA6-204ENST00000396199 4964 ntTSL 2 BASIC18.06■□□□□ 0.48
VPS53Q5VIR6 BCKDHA-201ENST00000269980 2103 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
VPS53Q5VIR6 MKS1-202ENST00000393119 2397 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
VPS53Q5VIR6 GLIPR1L2-204ENST00000550916 2609 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
VPS53Q5VIR6 INE2-201ENST00000630399 1874 ntBASIC18.05■□□□□ 0.48
VPS53Q5VIR6 AC092384.2-204ENST00000565053 2566 ntTSL 2 BASIC18.05■□□□□ 0.48
VPS53Q5VIR6 RREB1-202ENST00000349384 7440 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
VPS53Q5VIR6 TMEM230-202ENST00000342308 1562 ntTSL 2 BASIC18.05■□□□□ 0.48
VPS53Q5VIR6 PRR23C-201ENST00000413199 2791 ntAPPRIS P1 BASIC18.05■□□□□ 0.48
VPS53Q5VIR6 CLUHP2-201ENST00000426660 1303 ntBASIC18.05■□□□□ 0.48
VPS53Q5VIR6 NAA60-229ENST00000575076 2531 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
VPS53Q5VIR6 RPL15-201ENST00000307839 2730 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
VPS53Q5VIR6 TRIM13-202ENST00000378182 7249 ntAPPRIS P3 TSL 1 (best) BASIC18.05■□□□□ 0.48
VPS53Q5VIR6 AIFM1-209ENST00000535724 2468 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
VPS53Q5VIR6 SAFB-202ENST00000454510 2650 ntAPPRIS ALT2 TSL 2 BASIC18.05■□□□□ 0.48
VPS53Q5VIR6 ZNF587-203ENST00000423137 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
VPS53Q5VIR6 ZNRD1-201ENST00000332435 864 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
VPS53Q5VIR6 DBNDD2-201ENST00000357275 1036 ntAPPRIS P1 TSL 5 BASIC18.05■□□□□ 0.48
VPS53Q5VIR6 PNRC1-203ENST00000369472 816 ntTSL 2 BASIC18.05■□□□□ 0.48
VPS53Q5VIR6 CRYAA-202ENST00000398132 826 ntTSL 2 BASIC18.05■□□□□ 0.48
VPS53Q5VIR6 C17orf51-202ENST00000412778 877 ntAPPRIS ALT2 TSL 3 BASIC18.05■□□□□ 0.48
VPS53Q5VIR6 SUMF2-205ENST00000413756 1171 ntAPPRIS ALT2 TSL 5 BASIC18.05■□□□□ 0.48
VPS53Q5VIR6 ARSEP1-201ENST00000420443 635 ntBASIC18.05■□□□□ 0.48
VPS53Q5VIR6 CNN2P8-201ENST00000421872 913 ntBASIC18.05■□□□□ 0.48
VPS53Q5VIR6 AP000345.1-201ENST00000454863 569 ntTSL 4 BASIC18.05■□□□□ 0.48
VPS53Q5VIR6 IP6K1-203ENST00000460540 1260 ntTSL 2 BASIC18.05■□□□□ 0.48
VPS53Q5VIR6 DNAJC19-209ENST00000491873 769 ntTSL 2 BASIC18.05■□□□□ 0.48
VPS53Q5VIR6 AAMDC-206ENST00000526415 579 ntAPPRIS P1 TSL 2 BASIC18.05■□□□□ 0.48
VPS53Q5VIR6 RPL8-205ENST00000527914 551 ntTSL 3 BASIC18.05■□□□□ 0.48
VPS53Q5VIR6 IL32-218ENST00000530890 774 ntAPPRIS ALT2 TSL 2 BASIC18.05■□□□□ 0.48
VPS53Q5VIR6 CCKBR-204ENST00000531712 463 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
VPS53Q5VIR6 AC008969.1-205ENST00000553254 876 ntTSL 2 BASIC18.05■□□□□ 0.48
VPS53Q5VIR6 FP565260.6-205ENST00000624120 898 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
VPS53Q5VIR6 FP236240.1-204ENST00000624932 712 ntTSL 2 BASIC18.05■□□□□ 0.48
VPS53Q5VIR6 ANKMY1-203ENST00000373318 2449 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
VPS53Q5VIR6 AC097374.1-201ENST00000568768 6624 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
VPS53Q5VIR6 FGD2-201ENST00000274963 3046 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
VPS53Q5VIR6 SPATA7-203ENST00000393545 2123 ntAPPRIS P3 TSL 1 (best) BASIC18.05■□□□□ 0.48
VPS53Q5VIR6 ABCB8-212ENST00000477719 1625 ntTSL 5 BASIC18.05■□□□□ 0.48
VPS53Q5VIR6 FP565260.6-204ENST00000620528 1640 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
VPS53Q5VIR6 ADAMTS14-201ENST00000373207 5260 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
VPS53Q5VIR6 ADAMTS14-202ENST00000373208 5269 ntAPPRIS P4 TSL 2 BASIC18.05■□□□□ 0.48
VPS53Q5VIR6 TUBA8-202ENST00000330423 2018 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
VPS53Q5VIR6 CHEK2-204ENST00000382580 1971 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
VPS53Q5VIR6 CYB5R3-205ENST00000407623 2153 ntTSL 3 BASIC18.04■□□□□ 0.48
VPS53Q5VIR6 MTMR6-201ENST00000381801 5659 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
VPS53Q5VIR6 GAK-201ENST00000314167 4442 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
VPS53Q5VIR6 ADAM15-201ENST00000271836 2799 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
VPS53Q5VIR6 MROH1-207ENST00000528919 5234 ntAPPRIS P3 TSL 1 (best) BASIC18.04■□□□□ 0.48
VPS53Q5VIR6 UBE3B-212ENST00000540230 1541 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
VPS53Q5VIR6 CRELD1-203ENST00000397170 1728 ntAPPRIS P1 TSL 5 BASIC18.04■□□□□ 0.48
VPS53Q5VIR6 PITPNM2-201ENST00000280562 6785 ntAPPRIS ALT2 TSL 5 BASIC18.04■□□□□ 0.48
VPS53Q5VIR6 DLX6-202ENST00000518156 2304 ntAPPRIS P2 TSL 1 (best) BASIC18.04■□□□□ 0.48
VPS53Q5VIR6 USP47-207ENST00000527733 4525 ntAPPRIS P3 TSL 1 (best) BASIC18.04■□□□□ 0.48
VPS53Q5VIR6 PHF24-201ENST00000242315 5718 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
VPS53Q5VIR6 UNC5B-202ENST00000373192 6451 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
VPS53Q5VIR6 RET-202ENST00000355710 5659 ntAPPRIS P3 TSL 5 BASIC18.04■□□□□ 0.48
VPS53Q5VIR6 SLC17A5-201ENST00000355773 3455 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
VPS53Q5VIR6 KLHL26-201ENST00000300976 4407 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
VPS53Q5VIR6 GUK1-206ENST00000366723 845 ntTSL 5 BASIC18.04■□□□□ 0.48
VPS53Q5VIR6 GNG5-201ENST00000370641 920 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
VPS53Q5VIR6 GPR17-202ENST00000393018 1177 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
VPS53Q5VIR6 Z98749.2-201ENST00000428294 700 ntTSL 5 BASIC18.04■□□□□ 0.48
VPS53Q5VIR6 MDM2-215ENST00000428863 1037 ntTSL 5 BASIC18.04■□□□□ 0.48
VPS53Q5VIR6 KIF9-205ENST00000432493 633 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
VPS53Q5VIR6 KRT43P-201ENST00000434019 910 ntBASIC18.04■□□□□ 0.48
VPS53Q5VIR6 AP003171.2-201ENST00000528208 925 ntBASIC18.04■□□□□ 0.48
VPS53Q5VIR6 OMP-201ENST00000529803 492 ntAPPRIS P1 BASIC18.04■□□□□ 0.48
VPS53Q5VIR6 CFL1-212ENST00000531413 636 ntTSL 3 BASIC18.04■□□□□ 0.48
VPS53Q5VIR6 CACNA2D4-208ENST00000538027 952 ntTSL 5 BASIC18.04■□□□□ 0.48
VPS53Q5VIR6 AC018653.3-202ENST00000538062 735 ntTSL 3 BASIC18.04■□□□□ 0.48
VPS53Q5VIR6 AC005865.1-202ENST00000543036 641 ntTSL 2 BASIC18.04■□□□□ 0.48
VPS53Q5VIR6 RN7SL48P-201ENST00000579283 293 ntBASIC18.04■□□□□ 0.48
VPS53Q5VIR6 FERMT1-201ENST00000217289 5151 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
VPS53Q5VIR6 MPPE1-201ENST00000309976 1636 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
VPS53Q5VIR6 VWF-201ENST00000261405 8838 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
VPS53Q5VIR6 ARC-201ENST00000356613 2948 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
VPS53Q5VIR6 AP001627.1-201ENST00000437426 1754 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
VPS53Q5VIR6 PSMC5-209ENST00000580864 1552 ntTSL 5 BASIC18.04■□□□□ 0.48
VPS53Q5VIR6 SNX2-201ENST00000379516 2128 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
VPS53Q5VIR6 MPP1-204ENST00000393531 1389 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
VPS53Q5VIR6 CLDND1-215ENST00000507874 1380 ntTSL 3 BASIC18.04■□□□□ 0.48
VPS53Q5VIR6 SH3PXD2B-203ENST00000519643 1394 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
VPS53Q5VIR6 STIP1-207ENST00000538945 1900 ntTSL 2 BASIC18.04■□□□□ 0.48
VPS53Q5VIR6 NWD2-201ENST00000309447 8325 ntAPPRIS P1 TSL 5 BASIC18.04■□□□□ 0.48
VPS53Q5VIR6 LINC00476-204ENST00000429781 2825 ntTSL 2 BASIC18.04■□□□□ 0.48
VPS53Q5VIR6 SLC29A1-204ENST00000371731 2258 ntAPPRIS P1 TSL 5 BASIC18.03■□□□□ 0.48
VPS53Q5VIR6 SCYL1-201ENST00000270176 2642 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
VPS53Q5VIR6 ANXA8L1-208ENST00000622769 1861 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
VPS53Q5VIR6 ZNF365-205ENST00000395254 4173 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
VPS53Q5VIR6 CERS3-202ENST00000394113 2045 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
VPS53Q5VIR6 ACVR1B-206ENST00000542485 2362 ntTSL 2 BASIC18.03■□□□□ 0.48
VPS53Q5VIR6 YWHAE-208ENST00000571732 1818 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 34.3 ms