Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 CEP295NL-201ENST00000322630 2090 ntTSL 2 BASIC15.5■□□□□ 0.07
PTPN9P43378 CCNE1-202ENST00000357943 1641 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
PTPN9P43378 RNPS1-216ENST00000565678 2298 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
PTPN9P43378 GCFC2-201ENST00000321027 4440 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
PTPN9P43378 WBP2-215ENST00000591399 2225 ntAPPRIS P2 TSL 5 BASIC15.49■□□□□ 0.07
PTPN9P43378 THRA-203ENST00000450525 4895 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
PTPN9P43378 TRMT1-201ENST00000221504 2179 ntAPPRIS ALT2 TSL 1 (best) BASIC15.49■□□□□ 0.07
PTPN9P43378 PALLD-215ENST00000512127 2958 ntTSL 2 BASIC15.49■□□□□ 0.07
PTPN9P43378 CAMKK2-211ENST00000538733 5175 ntAPPRIS ALT2 TSL 1 (best) BASIC15.49■□□□□ 0.07
PTPN9P43378 C1orf159-202ENST00000379320 2324 ntAPPRIS ALT2 TSL 2 BASIC15.49■□□□□ 0.07
PTPN9P43378 PRNP-203ENST00000430350 2539 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
PTPN9P43378 MAP7-207ENST00000616617 4326 ntAPPRIS ALT2 TSL 5 BASIC15.49■□□□□ 0.07
PTPN9P43378 NLRX1-202ENST00000409109 4092 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
PTPN9P43378 ZNF497-201ENST00000311044 3468 ntAPPRIS P1 TSL 2 BASIC15.49■□□□□ 0.07
PTPN9P43378 EXOC7-213ENST00000467929 2260 ntTSL 2 BASIC15.49■□□□□ 0.07
PTPN9P43378 ILF2-201ENST00000361891 1659 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
PTPN9P43378 UBA6-202ENST00000420827 1664 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
PTPN9P43378 PDZK1IP1-201ENST00000294338 846 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
PTPN9P43378 KLK11-201ENST00000319720 1198 ntAPPRIS ALT2 TSL 1 (best) BASIC15.49■□□□□ 0.07
PTPN9P43378 CLCN6-207ENST00000376497 814 ntTSL 3 BASIC15.49■□□□□ 0.07
PTPN9P43378 FAM27C-201ENST00000377542 616 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
PTPN9P43378 DSCR3-202ENST00000398998 988 ntTSL 5 BASIC15.49■□□□□ 0.07
PTPN9P43378 AL136309.1-201ENST00000403917 691 ntBASIC15.49■□□□□ 0.07
PTPN9P43378 MIR1202-201ENST00000408529 83 ntBASIC15.49■□□□□ 0.07
PTPN9P43378 PUDPP3-201ENST00000445368 636 ntBASIC15.49■□□□□ 0.07
PTPN9P43378 VGLL4-214ENST00000451674 938 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
PTPN9P43378 CEP57L1-208ENST00000519095 908 ntTSL 3 BASIC15.49■□□□□ 0.07
PTPN9P43378 ZFPL1-207ENST00000526791 384 ntTSL 3 BASIC15.49■□□□□ 0.07
PTPN9P43378 AC079316.1-201ENST00000548397 411 ntBASIC15.49■□□□□ 0.07
PTPN9P43378 AC090502.1-201ENST00000549905 748 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
PTPN9P43378 AC090502.1-204ENST00000551210 469 ntTSL 2 BASIC15.49■□□□□ 0.07
PTPN9P43378 AC103988.2-201ENST00000561804 725 ntBASIC15.49■□□□□ 0.07
PTPN9P43378 H2BFM-203ENST00000598335 465 ntAPPRIS P1 TSL 5 BASIC15.49■□□□□ 0.07
PTPN9P43378 AC011510.1-201ENST00000598541 286 ntTSL 3 BASIC15.49■□□□□ 0.07
PTPN9P43378 SNAP25-AS1-208ENST00000605592 556 ntTSL 5 BASIC15.49■□□□□ 0.07
PTPN9P43378 HTT-AS1_1.1-201ENST00000612914 230 ntBASIC15.49■□□□□ 0.07
PTPN9P43378 MLLT10-216ENST00000621220 381 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
PTPN9P43378 LINC01002-220ENST00000632790 449 ntTSL 5 BASIC15.49■□□□□ 0.07
PTPN9P43378 AC002472.3-201ENST00000640124 621 ntBASIC15.49■□□□□ 0.07
PTPN9P43378 ZNF777-201ENST00000247930 3233 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
PTPN9P43378 PPIL2-212ENST00000626352 2625 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
PTPN9P43378 FAM219A-206ENST00000379087 3573 ntAPPRIS ALT1 TSL 4 BASIC15.49■□□□□ 0.07
PTPN9P43378 SDHAF2-201ENST00000301761 2033 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
PTPN9P43378 NR4A1-213ENST00000550082 2029 ntTSL 5 BASIC15.49■□□□□ 0.07
PTPN9P43378 MFN2-203ENST00000444836 4531 ntAPPRIS P1 TSL 2 BASIC15.49■□□□□ 0.07
PTPN9P43378 TTC22-202ENST00000371276 3345 ntAPPRIS P1 TSL 5 BASIC15.49■□□□□ 0.07
PTPN9P43378 FOXP3-203ENST00000376207 2382 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
PTPN9P43378 AC097359.2-201ENST00000604992 2389 ntBASIC15.49■□□□□ 0.07
PTPN9P43378 CSTB-201ENST00000291568 2164 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
PTPN9P43378 BCL11A-201ENST00000335712 5942 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
PTPN9P43378 TEAD3-202ENST00000402886 2729 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
PTPN9P43378 TBK1-201ENST00000331710 3256 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
PTPN9P43378 LRRC34-208ENST00000522830 1781 ntAPPRIS ALT2 TSL 5 BASIC15.49■□□□□ 0.07
PTPN9P43378 FUS-201ENST00000254108 5119 ntAPPRIS P3 TSL 1 (best) BASIC15.49■□□□□ 0.07
PTPN9P43378 AL590440.2-201ENST00000641973 1595 ntBASIC15.49■□□□□ 0.07
PTPN9P43378 STAG3L2-201ENST00000426587 2130 ntTSL 2 BASIC15.49■□□□□ 0.07
PTPN9P43378 SLC38A5-212ENST00000619100 2100 ntTSL 2 BASIC15.49■□□□□ 0.07
PTPN9P43378 SLC38A5-214ENST00000622196 2100 ntTSL 5 BASIC15.49■□□□□ 0.07
PTPN9P43378 DYSF-207ENST00000409762 6727 ntAPPRIS ALT2 TSL 1 (best) BASIC15.49■□□□□ 0.07
PTPN9P43378 DYSF-211ENST00000429174 6739 ntAPPRIS ALT2 TSL 1 (best) BASIC15.49■□□□□ 0.07
PTPN9P43378 SIGLEC6-202ENST00000346477 1940 ntAPPRIS ALT2 TSL 2 BASIC15.49■□□□□ 0.07
PTPN9P43378 PLEKHN1-202ENST00000379409 2455 ntAPPRIS ALT2 TSL 2 BASIC15.49■□□□□ 0.07
PTPN9P43378 C22orf34-201ENST00000343999 2816 ntTSL 2 BASIC15.49■□□□□ 0.07
PTPN9P43378 SPON1-201ENST00000576479 4837 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
PTPN9P43378 CENPK-202ENST00000396679 1734 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
PTPN9P43378 FCHSD2-204ENST00000409418 3154 ntAPPRIS P1 TSL 2 BASIC15.48■□□□□ 0.07
PTPN9P43378 ALDH1A2-201ENST00000249750 4098 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
PTPN9P43378 PLEKHA8-205ENST00000449726 7835 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
PTPN9P43378 TMEM184C-204ENST00000508208 1528 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
PTPN9P43378 LINC02076-201ENST00000577684 1871 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
PTPN9P43378 MYH14-210ENST00000601313 6896 ntAPPRIS ALT2 TSL 1 (best) BASIC15.48■□□□□ 0.07
PTPN9P43378 ST3GAL3-208ENST00000361392 2243 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
PTPN9P43378 GPSM1-205ENST00000440944 3633 ntAPPRIS P2 TSL 5 BASIC15.48■□□□□ 0.07
PTPN9P43378 CD27-201ENST00000266557 1338 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
PTPN9P43378 EIF4G1-216ENST00000427845 5038 ntTSL 5 BASIC15.48■□□□□ 0.07
PTPN9P43378 SIGLEC5-201ENST00000534261 2360 ntAPPRIS P1 TSL 5 BASIC15.48■□□□□ 0.07
PTPN9P43378 TGM6-202ENST00000381423 2158 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
PTPN9P43378 OXTR-201ENST00000316793 4364 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
PTPN9P43378 MAGEB2-201ENST00000378988 1610 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
PTPN9P43378 U82695.1-202ENST00000428676 700 ntTSL 2 BASIC15.48■□□□□ 0.07
PTPN9P43378 RGS5-214ENST00000429865 754 ntTSL 3 BASIC15.48■□□□□ 0.07
PTPN9P43378 KLF2P4-201ENST00000451959 1225 ntBASIC15.48■□□□□ 0.07
PTPN9P43378 CTBP2P5-201ENST00000454986 1264 ntBASIC15.48■□□□□ 0.07
PTPN9P43378 PRSS30P-204ENST00000489864 650 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
PTPN9P43378 S100A6-205ENST00000496817 673 ntAPPRIS P1 TSL 2 BASIC15.48■□□□□ 0.07
PTPN9P43378 PFN2-215ENST00000497148 743 ntTSL 4 BASIC15.48■□□□□ 0.07
PTPN9P43378 C1RL-212ENST00000545337 813 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
PTPN9P43378 AC093525.1-201ENST00000569317 596 ntAPPRIS P1 TSL 3 BASIC15.48■□□□□ 0.07
PTPN9P43378 DMAC2-208ENST00000589970 979 ntTSL 2 BASIC15.48■□□□□ 0.07
PTPN9P43378 DMAC2-215ENST00000597457 492 ntTSL 5 BASIC15.48■□□□□ 0.07
PTPN9P43378 ZACNP1-201ENST00000612259 710 ntBASIC15.48■□□□□ 0.07
PTPN9P43378 DCUN1D2-201ENST00000332592 2626 ntTSL 2 BASIC15.48■□□□□ 0.07
PTPN9P43378 ECHDC1-220ENST00000528402 1449 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
PTPN9P43378 SEPT9-244ENST00000592420 2588 ntTSL 2 BASIC15.48■□□□□ 0.07
PTPN9P43378 SPATA20-201ENST00000006658 2719 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
PTPN9P43378 AC027601.1-201ENST00000575922 4506 ntTSL 2 BASIC15.48■□□□□ 0.07
PTPN9P43378 TPGS2-202ENST00000383056 1726 ntAPPRIS ALT2 TSL 1 (best) BASIC15.48■□□□□ 0.07
PTPN9P43378 RASSF5-201ENST00000577571 3496 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
PTPN9P43378 CES1-203ENST00000422046 2178 ntAPPRIS ALT1 TSL 1 (best) BASIC15.48■□□□□ 0.07
PTPN9P43378 HNRNPU-201ENST00000283179 3120 ntAPPRIS ALT2 TSL 5 BASIC15.48■□□□□ 0.07
Retrieved 100 of 98,524 protein–RNA pairs in 43.2 ms